Wall clock time and date at job start Tue Mar 31 2020 06:03:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42895 * 113.99574 * 2 1 4 4 C 1.53006 * 109.47137 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47135 * 64.99496 * 4 3 2 6 6 C 1.46499 * 120.00007 * 275.00412 * 5 4 3 7 7 C 1.50694 * 109.46873 * 274.99910 * 6 5 4 8 8 H 1.07995 * 120.00471 * 0.02562 * 7 6 5 9 9 C 1.37879 * 119.99950 * 180.02562 * 7 6 5 10 10 N 1.31519 * 120.00162 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 120.00159 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.47545 * 60.00005 * 11 9 7 13 13 H 1.48501 * 109.47258 * 180.02562 * 11 9 7 14 14 H 1.48501 * 109.47223 * 299.99693 * 11 9 7 15 15 S 1.65594 * 119.99760 * 95.00170 * 5 4 3 16 16 O 1.42105 * 106.40378 * 336.46356 * 15 5 4 17 17 O 1.42096 * 106.40198 * 203.53971 * 15 5 4 18 18 C 1.76205 * 107.21756 * 90.00041 * 15 5 4 19 19 C 1.39861 * 126.05206 * 269.97337 * 18 15 5 20 20 C 1.50707 * 125.89026 * 359.97438 * 19 18 15 21 21 N 1.30829 * 108.22225 * 179.97438 * 19 18 15 22 22 N 1.40081 * 108.23548 * 359.74638 * 21 19 18 23 23 C 1.46503 * 126.03777 * 180.28820 * 22 21 19 24 24 C 1.34983 * 107.93076 * 0.42226 * 22 21 19 25 25 Cl 1.73599 * 126.14791 * 179.84917 * 24 22 21 26 26 H 1.09008 * 109.46778 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47085 * 300.00170 * 1 2 3 28 28 H 1.08994 * 109.47114 * 60.00626 * 1 2 3 29 29 H 1.08996 * 109.47886 * 59.99967 * 3 2 1 30 30 H 1.08999 * 109.47533 * 299.99537 * 3 2 1 31 31 H 1.09004 * 109.46823 * 304.99918 * 4 3 2 32 32 H 1.09001 * 109.47178 * 185.00198 * 4 3 2 33 33 H 1.08998 * 109.47080 * 34.99588 * 6 5 4 34 34 H 1.08998 * 109.46876 * 155.00348 * 6 5 4 35 35 H 0.96994 * 120.00256 * 179.97438 * 10 9 7 36 36 H 1.08999 * 109.46916 * 89.99596 * 20 19 18 37 37 H 1.08994 * 109.47096 * 209.99796 * 20 19 18 38 38 H 1.09002 * 109.47018 * 329.99854 * 20 19 18 39 39 H 1.08997 * 109.47208 * 270.15570 * 23 22 21 40 40 H 1.08997 * 109.47011 * 30.15925 * 23 22 21 41 41 H 1.09007 * 109.47007 * 150.15779 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1848 -0.0006 5 7 3.9757 0.5644 -1.2527 6 6 4.0005 -0.8950 -1.3780 7 6 5.2994 -1.4244 -0.8274 8 1 6.0330 -0.7422 -0.4240 9 6 5.5514 -2.7799 -0.8385 10 7 4.6579 -3.6109 -1.3293 11 14 7.1613 -3.4364 -0.1553 12 1 7.2811 -3.0611 1.2765 13 1 7.1870 -4.9156 -0.2836 14 1 8.2959 -2.8544 -0.9162 15 16 4.4453 1.5130 -2.5262 16 8 3.8177 2.7742 -2.3401 17 8 4.2757 0.7256 -3.6969 18 6 6.1775 1.7899 -2.3595 19 6 6.7794 2.8462 -1.6682 20 6 6.0576 3.9478 -0.9356 21 7 8.0771 2.7132 -1.7672 22 7 8.3436 1.5629 -2.5209 23 6 9.6707 1.0456 -2.8640 24 6 7.1619 1.0169 -2.8777 25 17 6.9429 -0.4217 -3.8244 26 1 -0.3633 -1.0278 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 1.6886 1.8464 0.8899 30 1 1.6886 1.8464 -0.8900 31 1 3.8515 0.5683 0.8410 32 1 3.9785 2.1766 0.0890 33 1 3.1679 -1.3218 -0.8188 34 1 3.9120 -1.1709 -2.4288 35 1 4.8353 -4.5645 -1.3375 36 1 5.8909 3.6477 0.0989 37 1 6.6610 4.8552 -0.9580 38 1 5.0986 4.1373 -1.4179 39 1 9.9980 1.4821 -3.8075 40 1 10.3777 1.3086 -2.0772 41 1 9.6235 -0.0390 -2.9624 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069738179.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:33 Heat of formation + Delta-G solvation = -38.729399 kcal Electronic energy + Delta-G solvation = -28923.149458 eV Core-core repulsion = 24800.821026 eV Total energy + Delta-G solvation = -4122.328432 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 351.085 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.19144 -37.66888 -36.78271 -36.39913 -35.27450 -35.09177 -34.00045 -32.49608 -30.31470 -29.41521 -29.35331 -26.68271 -25.68918 -25.56004 -22.76077 -21.77861 -21.54399 -20.31105 -18.36184 -17.40489 -16.92348 -16.35360 -15.93195 -15.82342 -15.57978 -15.46106 -15.06748 -14.66216 -14.40712 -14.29655 -13.55703 -13.43782 -13.34810 -12.74900 -12.60445 -12.57129 -12.34542 -12.16870 -11.96842 -11.83157 -11.79156 -11.57583 -11.43701 -11.20411 -11.13305 -11.02117 -10.86301 -10.66090 -10.58694 -10.29370 -10.27873 -9.99358 -9.68314 -9.21735 -9.08826 -8.92387 -8.36731 -7.91732 -5.99468 -4.02890 1.17160 1.55224 1.63554 2.35965 2.66620 3.25481 3.32634 3.33555 3.81391 4.24094 4.30970 4.42911 4.46325 4.85899 4.92234 5.02286 5.25019 5.30018 5.34788 5.43714 5.48547 5.61005 5.63432 5.70441 5.73198 5.75989 5.83928 5.90305 6.00219 6.07053 6.38607 6.49522 6.62221 6.69615 7.48420 7.56869 7.60884 7.62992 7.85839 8.00204 8.30707 9.00191 9.60296 11.08688 Molecular weight = 351.09amu Principal moments of inertia in cm(-1) A = 0.008823 B = 0.007079 C = 0.004771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3172.644472 B = 3954.655624 C = 5867.822317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.369 6.369 3 C 0.043 3.957 4 C 0.134 3.866 5 N -0.972 5.972 6 C 0.246 3.754 7 C -0.527 4.527 8 H 0.054 0.946 9 C 0.070 3.930 10 N -0.887 5.887 11 Si 0.878 3.122 12 H -0.277 1.277 13 H -0.286 1.286 14 H -0.279 1.279 15 S 2.713 3.287 16 O -0.980 6.980 17 O -0.950 6.950 18 C -0.792 4.792 19 C 0.165 3.835 20 C -0.105 4.105 21 N -0.286 5.286 22 N -0.361 5.361 23 C 0.089 3.911 24 C 0.251 3.749 25 Cl 0.050 6.950 26 H 0.082 0.918 27 H 0.033 0.967 28 H 0.036 0.964 29 H 0.051 0.949 30 H 0.051 0.949 31 H 0.091 0.909 32 H 0.081 0.919 33 H 0.060 0.940 34 H 0.050 0.950 35 H 0.262 0.738 36 H 0.086 0.914 37 H 0.079 0.921 38 H 0.114 0.886 39 H 0.082 0.918 40 H 0.097 0.903 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.195 10.959 0.007 11.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.287 6.287 3 C -0.035 4.035 4 C 0.006 3.994 5 N -0.811 5.811 6 C 0.124 3.876 7 C -0.567 4.567 8 H 0.072 0.928 9 C -0.132 4.132 10 N -0.526 5.526 11 Si 0.706 3.294 12 H -0.203 1.203 13 H -0.212 1.212 14 H -0.205 1.205 15 S 2.800 3.200 16 O -0.970 6.970 17 O -0.941 6.941 18 C -0.888 4.888 19 C -0.004 4.004 20 C -0.163 4.163 21 N -0.108 5.108 22 N -0.141 5.141 23 C -0.052 4.052 24 C 0.091 3.909 25 Cl 0.079 6.921 26 H 0.101 0.899 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.109 0.891 32 H 0.099 0.901 33 H 0.078 0.922 34 H 0.068 0.932 35 H 0.072 0.928 36 H 0.104 0.896 37 H 0.098 0.902 38 H 0.132 0.868 39 H 0.100 0.900 40 H 0.116 0.884 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 3.098 11.177 -0.509 11.609 hybrid contribution 1.011 -1.020 0.491 1.518 sum 4.109 10.157 -0.018 10.957 Atomic orbital electron populations 1.22701 0.82411 1.02418 0.99099 1.88106 1.18388 1.27067 1.95155 1.23107 0.95253 0.85194 0.99975 1.21131 0.91398 0.97898 0.88924 1.57343 1.77658 1.19241 1.26902 1.19326 0.97972 0.71113 0.99165 1.21449 1.02701 0.91925 1.40618 0.92766 1.24805 0.96153 0.96861 0.95412 1.69917 1.34127 1.03061 1.45451 0.86883 0.84719 0.78017 0.79734 1.20314 1.21189 1.20531 1.01261 0.72463 0.72539 0.73775 1.93427 1.73897 1.42857 1.86806 1.93562 1.85093 1.69711 1.45698 1.31473 1.26609 1.08317 1.22401 1.21773 0.90393 0.94310 0.93930 1.20774 1.01451 0.94047 1.00068 1.77394 1.16174 1.01470 1.15775 1.48966 1.05410 1.19799 1.39937 1.22076 0.80047 1.00438 1.02626 1.21526 0.86733 0.89566 0.93062 1.98526 1.95911 1.30299 1.67374 0.89899 0.94839 0.94569 0.93105 0.93065 0.89111 0.90134 0.92226 0.93225 0.92806 0.89563 0.90195 0.86796 0.89953 0.88406 0.88779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 11.01 101.05 1.11 1.53 16 2 O -0.37 -6.66 9.02 -35.23 -0.32 -6.97 16 3 C 0.04 0.69 6.28 37.16 0.23 0.92 16 4 C 0.13 2.28 5.79 -4.04 -0.02 2.26 16 5 N -0.97 -20.09 2.75 -115.66 -0.32 -20.41 16 6 C 0.25 6.07 5.27 -5.20 -0.03 6.04 16 7 C -0.53 -13.67 9.38 -34.44 -0.32 -13.99 16 8 H 0.05 1.40 7.81 -52.49 -0.41 0.99 16 9 C 0.07 1.89 5.46 -17.82 -0.10 1.79 16 10 N -0.89 -25.16 13.29 55.43 0.74 -24.43 16 11 Si 0.88 20.85 29.54 -169.99 -5.02 15.83 16 12 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 13 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 14 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 15 S 2.71 54.99 5.71 -107.50 -0.61 54.37 16 16 O -0.98 -18.71 14.34 -57.17 -0.82 -19.53 16 17 O -0.95 -21.75 14.86 -57.17 -0.85 -22.60 16 18 C -0.79 -15.27 6.17 -39.96 -0.25 -15.52 16 19 C 0.16 2.84 7.21 -82.41 -0.59 2.24 16 20 C -0.11 -1.40 10.15 36.01 0.37 -1.03 16 21 N -0.29 -4.95 12.57 33.67 0.42 -4.53 16 22 N -0.36 -6.08 4.01 -64.90 -0.26 -6.34 16 23 C 0.09 1.05 11.31 59.85 0.68 1.73 16 24 C 0.25 4.80 7.43 -17.15 -0.13 4.67 16 25 Cl 0.05 0.98 27.06 -51.86 -1.40 -0.42 16 26 H 0.08 1.07 8.14 -51.92 -0.42 0.65 16 27 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.09 1.59 8.11 -51.93 -0.42 1.17 16 32 H 0.08 1.13 7.61 -51.93 -0.40 0.74 16 33 H 0.06 1.57 6.60 -51.93 -0.34 1.23 16 34 H 0.05 1.35 6.91 -51.93 -0.36 0.99 16 35 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 36 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 37 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.11 1.56 5.66 -51.93 -0.29 1.27 16 39 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 41 H 0.09 1.06 7.81 -51.92 -0.41 0.66 16 LS Contribution 372.04 15.07 5.61 5.61 Total: -1.00 -32.90 372.04 -7.46 -40.36 By element: Atomic # 1 Polarization: 3.98 SS G_CDS: -5.57 Total: -1.58 kcal Atomic # 6 Polarization: -10.30 SS G_CDS: 0.95 Total: -9.35 kcal Atomic # 7 Polarization: -56.28 SS G_CDS: 0.58 Total: -55.70 kcal Atomic # 8 Polarization: -47.12 SS G_CDS: -1.99 Total: -49.11 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Atomic # 16 Polarization: 54.99 SS G_CDS: -0.61 Total: 54.37 kcal Atomic # 17 Polarization: 0.98 SS G_CDS: -1.40 Total: -0.42 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.90 -7.46 -40.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069738179.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.630 kcal (2) G-P(sol) polarization free energy of solvation -32.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds