Wall clock time and date at job start Tue Mar 31 2020 05:21:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 119.99762 * 2 1 4 4 H 1.48501 * 109.46999 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46581 * 299.99818 * 3 2 1 6 6 H 1.48493 * 109.47258 * 59.99521 * 3 2 1 7 7 C 1.37875 * 120.00174 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99839 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00131 * 359.97438 * 7 2 1 10 10 N 1.46501 * 109.47313 * 179.97438 * 9 7 2 11 11 C 1.46502 * 119.99927 * 94.62679 * 10 9 7 12 12 C 1.50703 * 109.46877 * 89.99983 * 11 10 9 13 13 C 1.38237 * 119.61426 * 95.02135 * 12 11 10 14 14 C 1.38621 * 119.15878 * 179.74534 * 13 12 11 15 15 C 1.38686 * 118.41966 * 0.47291 * 14 13 12 16 16 C 1.38183 * 119.16060 * 359.50606 * 15 14 13 17 17 N 1.31848 * 119.61921 * 274.99754 * 12 11 10 18 18 C 1.34778 * 119.99822 * 274.62748 * 10 9 7 19 19 O 1.21713 * 119.99680 * 185.52848 * 18 10 9 20 20 C 1.46243 * 119.99915 * 5.53564 * 18 10 9 21 21 C 1.35594 * 120.14526 * 279.32802 * 20 18 10 22 22 C 1.47108 * 117.87263 * 180.72407 * 21 20 18 23 23 C 1.39440 * 121.54091 * 196.42141 * 22 21 20 24 24 C 1.37948 * 119.51048 * 180.17030 * 23 22 21 25 25 C 1.38579 * 120.35163 * 0.02562 * 24 23 22 26 26 C 1.38250 * 120.63084 * 0.05183 * 25 24 23 27 27 C 1.38337 * 119.86048 * 359.90070 * 26 25 24 28 28 O 1.35572 * 121.32201 * 180.02562 * 27 26 25 29 29 C 1.42806 * 117.29053 * 146.11441 * 28 27 26 30 30 H 0.96993 * 120.00581 * 359.97438 * 1 2 3 31 31 H 1.08999 * 109.47080 * 59.99794 * 9 7 2 32 32 H 1.09002 * 109.47433 * 300.00042 * 9 7 2 33 33 H 1.09003 * 109.47146 * 330.00191 * 11 10 9 34 34 H 1.08997 * 109.46864 * 209.99920 * 11 10 9 35 35 H 1.07996 * 120.41853 * 359.95716 * 13 12 11 36 36 H 1.07998 * 120.79201 * 180.23344 * 14 13 12 37 37 H 1.07996 * 120.41479 * 179.78342 * 15 14 13 38 38 H 1.07998 * 119.61487 * 180.24953 * 16 15 14 39 39 H 1.08005 * 121.06937 * 0.94181 * 21 20 18 40 40 H 1.07994 * 120.24206 * 0.19170 * 23 22 21 41 41 H 1.07999 * 119.82841 * 179.97438 * 24 23 22 42 42 H 1.07997 * 119.68167 * 180.02562 * 25 24 23 43 43 H 1.08005 * 120.06543 * 180.02562 * 26 25 24 44 44 H 1.09004 * 109.30130 * 288.01911 * 29 28 27 45 45 H 1.08991 * 109.13470 * 168.52684 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0001 9 6 1.2512 -2.4992 0.0017 10 7 2.2032 -3.6127 0.0015 11 6 2.6024 -4.2354 1.2661 12 6 1.6627 -5.3692 1.5863 13 6 2.0004 -6.6596 1.2230 14 6 1.1315 -7.6961 1.5269 15 6 -0.0544 -7.3935 2.1790 16 6 -0.3240 -6.0795 2.5110 17 7 0.5284 -5.1191 2.2100 18 6 2.7118 -4.0642 -1.1622 19 8 3.4231 -5.0517 -1.1729 20 6 2.4089 -3.3674 -2.4118 21 6 1.2304 -3.5868 -3.0454 22 6 0.9845 -2.8718 -4.3073 23 6 -0.2965 -2.7653 -4.8476 24 6 -0.4788 -2.0880 -6.0355 25 6 0.6017 -1.5174 -6.6891 26 6 1.8763 -1.6181 -6.1634 27 6 2.0789 -2.2925 -4.9727 28 8 3.3160 -2.4089 -4.4303 29 6 3.4087 -2.4093 -3.0052 30 1 -0.4850 0.8399 0.0004 31 1 0.6241 -2.5575 -0.8880 32 1 0.6248 -2.5564 0.8920 33 1 2.5629 -3.4942 2.0644 34 1 3.6185 -4.6196 1.1769 35 1 2.9308 -6.8580 0.7119 36 1 1.3707 -8.7145 1.2587 37 1 -0.7563 -8.1755 2.4281 38 1 -1.2435 -5.8361 3.0225 39 1 0.4942 -4.2622 -2.6351 40 1 -1.1398 -3.2094 -4.3397 41 1 -1.4687 -2.0028 -6.4588 42 1 0.4465 -0.9892 -7.6183 43 1 2.7119 -1.1695 -6.6803 44 1 3.2101 -1.4049 -2.6310 45 1 4.4145 -2.7105 -2.7127 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069739760.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:08 Heat of formation + Delta-G solvation = 13.160925 kcal Electronic energy + Delta-G solvation = -30649.610425 eV Core-core repulsion = 26597.780030 eV Total energy + Delta-G solvation = -4051.830395 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 350.142 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.52530 -40.03537 -38.87492 -37.16595 -35.17705 -33.90924 -32.81077 -32.22033 -31.46310 -30.28838 -30.17104 -27.63378 -26.42165 -25.62792 -23.85391 -23.33448 -22.78233 -22.38161 -21.84065 -19.97427 -17.97641 -17.68417 -16.86670 -16.66889 -16.36587 -16.19094 -15.81798 -15.55475 -15.36600 -15.25832 -14.62812 -14.48915 -14.25488 -13.96051 -13.62593 -13.39632 -13.22988 -13.08193 -12.76808 -12.58936 -12.44836 -12.35776 -11.90460 -11.69347 -11.60484 -11.40281 -11.31668 -11.08036 -10.96801 -10.77242 -10.44273 -10.23626 -9.86393 -9.75443 -9.69232 -9.37148 -9.19693 -8.81356 -8.55227 -8.43707 -7.89824 -7.53866 -6.17363 -4.24273 0.96389 1.25697 1.47287 1.56124 2.45126 3.04751 3.21196 3.30407 3.32535 3.51063 3.78807 4.06322 4.22109 4.32759 4.54302 4.89254 4.93205 4.94696 4.98670 5.06979 5.13710 5.17291 5.21775 5.32013 5.34413 5.43619 5.53273 5.64225 5.73252 5.73614 5.93042 5.96452 5.98237 6.07603 6.12998 6.27298 6.31638 6.35369 6.39359 6.56578 6.65573 6.66897 6.78681 6.87768 6.97767 7.22866 7.45474 7.61266 7.75542 8.05545 8.13630 8.27170 8.68405 8.84989 9.42134 10.89843 Molecular weight = 350.14amu Principal moments of inertia in cm(-1) A = 0.008334 B = 0.004325 C = 0.003428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3359.072209 B = 6471.700708 C = 8166.622954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.069 3.931 3 Si 0.889 3.111 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.537 4.537 8 H 0.061 0.939 9 C 0.236 3.764 10 N -0.577 5.577 11 C 0.167 3.833 12 C 0.118 3.882 13 C -0.150 4.150 14 C -0.084 4.084 15 C -0.180 4.180 16 C 0.094 3.906 17 N -0.464 5.464 18 C 0.563 3.437 19 O -0.563 6.563 20 C -0.152 4.152 21 C -0.070 4.070 22 C -0.114 4.114 23 C -0.069 4.069 24 C -0.151 4.151 25 C -0.090 4.090 26 C -0.147 4.147 27 C 0.133 3.867 28 O -0.312 6.312 29 C 0.119 3.881 30 H 0.264 0.736 31 H 0.037 0.963 32 H 0.049 0.951 33 H 0.099 0.901 34 H 0.090 0.910 35 H 0.139 0.861 36 H 0.130 0.870 37 H 0.129 0.871 38 H 0.153 0.847 39 H 0.130 0.870 40 H 0.128 0.872 41 H 0.123 0.877 42 H 0.126 0.874 43 H 0.130 0.870 44 H 0.093 0.907 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.547 -8.803 -4.545 9.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.135 4.135 3 Si 0.717 3.283 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.575 4.575 8 H 0.079 0.921 9 C 0.116 3.884 10 N -0.306 5.306 11 C 0.043 3.957 12 C -0.021 4.021 13 C -0.171 4.171 14 C -0.110 4.110 15 C -0.200 4.200 16 C -0.063 4.063 17 N -0.173 5.173 18 C 0.351 3.649 19 O -0.444 6.444 20 C -0.155 4.155 21 C -0.089 4.089 22 C -0.115 4.115 23 C -0.087 4.087 24 C -0.169 4.169 25 C -0.108 4.108 26 C -0.166 4.166 27 C 0.087 3.913 28 O -0.227 6.227 29 C 0.044 3.956 30 H 0.074 0.926 31 H 0.055 0.945 32 H 0.067 0.933 33 H 0.118 0.882 34 H 0.108 0.892 35 H 0.157 0.843 36 H 0.148 0.852 37 H 0.147 0.853 38 H 0.170 0.830 39 H 0.147 0.853 40 H 0.146 0.854 41 H 0.141 0.859 42 H 0.144 0.856 43 H 0.148 0.852 44 H 0.111 0.889 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -0.352 -8.300 -4.377 9.390 hybrid contribution 0.135 0.071 0.118 0.193 sum -0.216 -8.229 -4.258 9.268 Atomic orbital electron populations 1.69930 1.05953 1.27075 1.49306 1.24892 0.94790 0.99048 0.94757 0.86570 0.80216 0.83675 0.77857 1.19557 1.20818 1.20768 1.21442 0.93396 0.90354 1.52335 0.92110 1.19583 0.87409 0.81982 0.99384 1.48276 1.44606 1.34018 1.03661 1.20213 0.95226 0.92591 0.87681 1.21834 0.92862 0.94203 0.93189 1.22142 1.01519 0.93331 1.00074 1.21556 0.93745 0.99512 0.96167 1.22101 0.98270 0.98336 1.01340 1.22761 0.98141 0.88707 0.96704 1.67583 1.02480 1.36435 1.10820 1.17890 0.79720 0.83354 0.83965 1.90740 1.39901 1.26553 1.87212 1.22142 0.96754 1.00301 0.96332 1.21740 0.94905 0.98688 0.93529 1.19084 0.93913 1.01695 0.96821 1.21029 0.95369 0.97415 0.94868 1.20988 0.98928 1.00756 0.96236 1.20998 0.91769 0.98636 0.99418 1.20480 0.97938 1.01397 0.96741 1.19092 0.84034 0.94175 0.93950 1.85921 1.25418 1.88899 1.22414 1.21596 0.98597 0.98973 0.76428 0.92620 0.94486 0.93322 0.88240 0.89225 0.84337 0.85248 0.85265 0.83017 0.85255 0.85439 0.85882 0.85648 0.85202 0.88943 0.86877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.36 13.29 55.43 0.74 -23.62 16 2 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 3 Si 0.89 20.36 29.54 -169.99 -5.02 15.33 16 4 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 5 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 7 C -0.54 -13.57 9.13 -34.44 -0.31 -13.88 16 8 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 9 C 0.24 5.59 4.92 -5.19 -0.03 5.56 16 10 N -0.58 -11.96 2.45 -178.14 -0.44 -12.40 16 11 C 0.17 3.07 5.65 -5.19 -0.03 3.04 16 12 C 0.12 2.06 6.36 -82.58 -0.53 1.53 16 13 C -0.15 -2.31 9.71 -39.44 -0.38 -2.69 16 14 C -0.08 -1.07 10.18 -39.27 -0.40 -1.47 16 15 C -0.18 -2.19 10.11 -39.44 -0.40 -2.59 16 16 C 0.09 1.35 11.18 -17.55 -0.20 1.15 16 17 N -0.46 -8.23 10.27 -9.47 -0.10 -8.33 16 18 C 0.56 11.65 6.98 -13.04 -0.09 11.56 16 19 O -0.56 -12.14 16.46 5.18 0.09 -12.06 16 20 C -0.15 -3.02 4.33 -102.37 -0.44 -3.46 16 21 C -0.07 -1.32 8.49 -36.93 -0.31 -1.63 16 22 C -0.11 -2.03 5.80 -104.97 -0.61 -2.63 16 23 C -0.07 -1.05 9.86 -39.24 -0.39 -1.43 16 24 C -0.15 -1.98 10.03 -39.56 -0.40 -2.38 16 25 C -0.09 -1.15 10.02 -39.45 -0.40 -1.54 16 26 C -0.15 -2.15 10.01 -39.54 -0.40 -2.55 16 27 C 0.13 2.32 6.47 -38.66 -0.25 2.07 16 28 O -0.31 -5.68 10.40 -18.41 -0.19 -5.87 16 29 C 0.12 2.20 6.94 35.98 0.25 2.45 16 30 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 31 H 0.04 0.93 6.20 -51.93 -0.32 0.61 16 32 H 0.05 1.26 8.04 -51.93 -0.42 0.84 16 33 H 0.10 1.84 8.07 -51.93 -0.42 1.42 16 34 H 0.09 1.53 7.40 -51.93 -0.38 1.14 16 35 H 0.14 2.11 7.79 -52.49 -0.41 1.70 16 36 H 0.13 1.28 8.06 -52.49 -0.42 0.85 16 37 H 0.13 1.15 8.06 -52.49 -0.42 0.72 16 38 H 0.15 1.75 8.06 -52.49 -0.42 1.33 16 39 H 0.13 2.32 8.06 -52.48 -0.42 1.90 16 40 H 0.13 1.72 8.06 -52.49 -0.42 1.30 16 41 H 0.12 1.27 8.06 -52.49 -0.42 0.84 16 42 H 0.13 1.20 8.06 -52.49 -0.42 0.77 16 43 H 0.13 1.63 8.06 -52.48 -0.42 1.21 16 44 H 0.09 1.82 8.14 -51.93 -0.42 1.39 16 45 H 0.11 1.91 8.10 -51.93 -0.42 1.49 16 LS Contribution 389.68 15.07 5.87 5.87 Total: -1.00 -30.66 389.68 -10.18 -40.84 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: -5.72 Total: 7.42 kcal Atomic # 6 Polarization: -1.79 SS G_CDS: -5.40 Total: -7.20 kcal Atomic # 7 Polarization: -44.55 SS G_CDS: 0.20 Total: -44.35 kcal Atomic # 8 Polarization: -17.82 SS G_CDS: -0.11 Total: -17.93 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -30.66 -10.18 -40.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069739760.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.002 kcal (2) G-P(sol) polarization free energy of solvation -30.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.841 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds