Wall clock time and date at job start Tue Mar 31 2020 06:00:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42908 * 113.99648 * 2 1 4 4 C 1.52996 * 109.46656 * 180.02562 * 3 2 1 5 5 N 1.46503 * 109.47412 * 65.00262 * 4 3 2 6 6 C 1.46496 * 119.99560 * 274.99666 * 5 4 3 7 7 C 1.50704 * 109.47118 * 274.99760 * 6 5 4 8 8 H 1.07995 * 120.00194 * 0.02562 * 7 6 5 9 9 C 1.37879 * 119.99648 * 180.02562 * 7 6 5 10 10 N 1.31510 * 120.00480 * 359.97438 * 9 7 6 11 11 Si 1.86802 * 119.99588 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47193 * 359.97438 * 11 9 7 13 13 H 1.48507 * 109.46903 * 119.99891 * 11 9 7 14 14 H 1.48499 * 109.47085 * 239.99438 * 11 9 7 15 15 S 1.65593 * 120.00064 * 94.99713 * 5 4 3 16 16 O 1.42104 * 106.40277 * 156.45988 * 15 5 4 17 17 O 1.42100 * 106.40496 * 23.54035 * 15 5 4 18 18 C 1.76196 * 107.21763 * 269.99794 * 15 5 4 19 19 C 1.38264 * 119.97285 * 270.02111 * 18 15 5 20 20 C 1.38194 * 120.05301 * 180.02562 * 19 18 15 21 21 C 1.38447 * 119.98582 * 359.95563 * 20 19 18 22 22 F 1.35098 * 120.03314 * 180.29640 * 21 20 19 23 23 C 1.38555 * 119.93778 * 0.02622 * 21 20 19 24 24 Cl 1.73602 * 120.02332 * 180.02562 * 23 21 20 25 25 C 1.38218 * 119.96621 * 90.00539 * 18 15 5 26 26 H 1.09004 * 109.46946 * 299.99384 * 1 2 3 27 27 H 1.08995 * 109.47244 * 59.99714 * 1 2 3 28 28 H 1.08999 * 109.46739 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47114 * 60.00297 * 3 2 1 30 30 H 1.08998 * 109.47034 * 300.00106 * 3 2 1 31 31 H 1.08998 * 109.47642 * 304.99845 * 4 3 2 32 32 H 1.09002 * 109.47046 * 185.00220 * 4 3 2 33 33 H 1.09000 * 109.47437 * 34.99884 * 6 5 4 34 34 H 1.08997 * 109.47082 * 155.00090 * 6 5 4 35 35 H 0.96997 * 120.00168 * 179.97438 * 10 9 7 36 36 H 1.07999 * 119.97540 * 0.02562 * 19 18 15 37 37 H 1.08000 * 120.00964 * 180.02562 * 20 19 18 38 38 H 1.07992 * 119.99809 * 0.02562 * 25 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9756 0.5645 -1.2528 6 6 4.0004 -0.8948 -1.3781 7 6 5.2994 -1.4244 -0.8275 8 1 6.0330 -0.7422 -0.4241 9 6 5.5513 -2.7799 -0.8387 10 7 4.6579 -3.6108 -1.3295 11 14 7.1612 -3.4364 -0.1555 12 1 7.9893 -2.3050 0.3337 13 1 6.8798 -4.3664 0.9675 14 1 7.8946 -4.1597 -1.2252 15 16 4.4453 1.5131 -2.5262 16 8 5.3006 0.7116 -3.3296 17 8 4.8425 2.7601 -1.9727 18 6 3.0091 1.8338 -3.4952 19 6 2.6653 0.9776 -4.5251 20 6 1.5395 1.2278 -5.2865 21 6 0.7545 2.3361 -5.0175 22 9 -0.3496 2.5783 -5.7574 23 6 1.0993 3.1935 -3.9851 24 17 0.1162 4.5834 -3.6455 25 6 2.2269 2.9408 -3.2250 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.6886 1.8464 0.8900 30 1 1.6885 1.8464 -0.8900 31 1 3.8514 0.5683 0.8409 32 1 3.9785 2.1766 0.0890 33 1 3.1678 -1.3218 -0.8190 34 1 3.9119 -1.1708 -2.4289 35 1 4.8353 -4.5644 -1.3377 36 1 3.2771 0.1126 -4.7346 37 1 1.2715 0.5584 -6.0904 38 1 2.4964 3.6089 -2.4205 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069842068.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:14 Heat of formation + Delta-G solvation = -135.603669 kcal Electronic energy + Delta-G solvation = -27685.839644 eV Core-core repulsion = 23403.557372 eV Total energy + Delta-G solvation = -4282.282272 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 351.054 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.37212 -39.30154 -37.86084 -36.87749 -36.76926 -35.47429 -35.31245 -32.54773 -31.39749 -30.90142 -29.58937 -26.81426 -25.74068 -23.61406 -23.40407 -22.87576 -21.82529 -18.95154 -18.19116 -17.53421 -17.05708 -16.92653 -16.33064 -16.13303 -16.00330 -15.75352 -15.32393 -15.08501 -14.65895 -14.43280 -14.24063 -13.83697 -13.58365 -13.50845 -13.41983 -12.64873 -12.36322 -12.15543 -12.02775 -11.91904 -11.87020 -11.69753 -11.57474 -11.42943 -11.31942 -11.06686 -10.88455 -10.78279 -10.66041 -10.39878 -10.01520 -9.74522 -9.55108 -9.32576 -9.16964 -8.40547 -8.10697 -6.02640 -4.05764 0.29648 0.71932 0.84608 1.66420 2.87026 3.33272 3.40965 3.45220 3.54686 3.65443 4.05530 4.16344 4.25777 4.47158 4.55824 4.78865 4.90764 5.14702 5.27572 5.28898 5.33290 5.34121 5.47153 5.49111 5.52741 5.55752 5.66490 5.72478 5.78643 5.85214 6.22556 6.29522 6.46653 7.31374 7.38552 7.43632 7.69679 7.94836 8.24340 8.96329 9.58547 11.05949 Molecular weight = 351.05amu Principal moments of inertia in cm(-1) A = 0.014087 B = 0.003930 C = 0.003734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1987.149895 B = 7122.408016 C = 7495.939852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.365 6.365 3 C 0.039 3.961 4 C 0.120 3.880 5 N -0.969 5.969 6 C 0.255 3.745 7 C -0.527 4.527 8 H 0.061 0.939 9 C 0.064 3.936 10 N -0.894 5.894 11 Si 0.894 3.106 12 H -0.272 1.272 13 H -0.284 1.284 14 H -0.283 1.283 15 S 2.681 3.319 16 O -0.932 6.932 17 O -0.971 6.971 18 C -0.674 4.674 19 C 0.021 3.979 20 C -0.161 4.161 21 C 0.155 3.845 22 F -0.122 7.122 23 C -0.100 4.100 24 Cl -0.048 7.048 25 C 0.012 3.988 26 H 0.035 0.965 27 H 0.033 0.967 28 H 0.084 0.916 29 H 0.055 0.945 30 H 0.039 0.961 31 H 0.101 0.899 32 H 0.096 0.904 33 H 0.058 0.942 34 H 0.034 0.966 35 H 0.262 0.738 36 H 0.162 0.838 37 H 0.155 0.845 38 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.835 12.261 -3.263 16.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.283 6.283 3 C -0.040 4.040 4 C -0.007 4.007 5 N -0.809 5.809 6 C 0.133 3.867 7 C -0.566 4.566 8 H 0.079 0.921 9 C -0.139 4.139 10 N -0.533 5.533 11 Si 0.722 3.278 12 H -0.197 1.197 13 H -0.211 1.211 14 H -0.209 1.209 15 S 2.767 3.233 16 O -0.922 6.922 17 O -0.961 6.961 18 C -0.757 4.757 19 C 0.002 3.998 20 C -0.181 4.181 21 C 0.134 3.866 22 F -0.100 7.100 23 C -0.128 4.128 24 Cl -0.019 7.019 25 C -0.008 4.008 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.102 0.898 29 H 0.073 0.927 30 H 0.057 0.943 31 H 0.120 0.880 32 H 0.115 0.885 33 H 0.076 0.924 34 H 0.052 0.948 35 H 0.072 0.928 36 H 0.179 0.821 37 H 0.172 0.828 38 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -10.097 12.332 -3.499 16.318 hybrid contribution -0.647 -0.100 -0.054 0.657 sum -10.744 12.232 -3.553 16.664 Atomic orbital electron populations 1.22707 0.82353 1.02537 0.99058 1.88136 1.18382 1.26657 1.95095 1.23202 0.95681 0.85564 0.99555 1.21377 0.90762 0.99519 0.89008 1.57378 1.81499 1.19083 1.22924 1.19254 0.98548 0.70801 0.98053 1.21521 1.02549 0.92145 1.40412 0.92117 1.24888 0.96869 0.96760 0.95335 1.69929 1.34440 1.03080 1.45854 0.86505 0.83714 0.78941 0.78630 1.19659 1.21067 1.20925 1.02554 0.73967 0.73132 0.73655 1.93627 1.60916 1.68580 1.69098 1.93511 1.80459 1.44001 1.78167 1.31845 1.25081 1.03798 1.14930 1.21055 0.93246 0.96308 0.89179 1.21315 0.96223 0.97303 1.03260 1.17635 0.84462 0.94629 0.89839 1.91562 1.49850 1.93874 1.74717 1.21001 0.97785 0.93597 1.00452 1.98387 1.69133 1.39739 1.94608 1.20712 0.89472 0.94293 0.96279 0.94674 0.94831 0.89765 0.92723 0.94296 0.88034 0.88547 0.92390 0.94792 0.92847 0.82073 0.82767 0.82551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 11.01 101.05 1.11 1.49 16 2 O -0.36 -5.95 9.02 -35.23 -0.32 -6.27 16 3 C 0.04 0.54 6.28 37.16 0.23 0.77 16 4 C 0.12 1.91 6.13 -4.04 -0.02 1.89 16 5 N -0.97 -18.64 2.75 -115.67 -0.32 -18.96 16 6 C 0.25 6.04 4.94 -5.19 -0.03 6.01 16 7 C -0.53 -14.14 9.38 -34.44 -0.32 -14.47 16 8 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 9 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 10 N -0.89 -25.39 13.29 55.43 0.74 -24.66 16 11 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 12 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 13 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 14 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 15 S 2.68 48.99 5.65 -107.50 -0.61 48.38 16 16 O -0.93 -20.28 16.25 -57.17 -0.93 -21.21 16 17 O -0.97 -17.94 15.83 -57.17 -0.91 -18.85 16 18 C -0.67 -10.03 5.97 -39.58 -0.24 -10.26 16 19 C 0.02 0.29 9.52 -39.59 -0.38 -0.09 16 20 C -0.16 -1.89 10.03 -39.52 -0.40 -2.29 16 21 C 0.15 1.90 7.28 -39.39 -0.29 1.61 16 22 F -0.12 -1.46 16.84 2.25 0.04 -1.42 16 23 C -0.10 -1.25 6.33 -39.43 -0.25 -1.50 16 24 Cl -0.05 -0.53 28.62 -51.86 -1.48 -2.02 16 25 C 0.01 0.16 8.15 -39.56 -0.32 -0.16 16 26 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 29 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.04 0.50 6.95 -51.93 -0.36 0.14 16 31 H 0.10 1.69 8.11 -51.93 -0.42 1.27 16 32 H 0.10 1.33 6.91 -51.93 -0.36 0.97 16 33 H 0.06 1.44 6.60 -51.93 -0.34 1.10 16 34 H 0.03 0.84 7.61 -51.93 -0.40 0.45 16 35 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 36 H 0.16 2.18 7.62 -52.49 -0.40 1.78 16 37 H 0.15 1.38 8.06 -52.49 -0.42 0.95 16 38 H 0.16 1.83 7.61 -52.49 -0.40 1.43 16 LS Contribution 357.74 15.07 5.39 5.39 Total: -1.00 -31.79 357.74 -8.75 -40.54 By element: Atomic # 1 Polarization: 2.43 SS G_CDS: -4.34 Total: -1.90 kcal Atomic # 6 Polarization: -14.34 SS G_CDS: -0.99 Total: -15.34 kcal Atomic # 7 Polarization: -44.03 SS G_CDS: 0.42 Total: -43.61 kcal Atomic # 8 Polarization: -44.17 SS G_CDS: -2.15 Total: -46.32 kcal Atomic # 9 Polarization: -1.46 SS G_CDS: 0.04 Total: -1.42 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: 48.99 SS G_CDS: -0.61 Total: 48.38 kcal Atomic # 17 Polarization: -0.53 SS G_CDS: -1.48 Total: -2.02 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.79 -8.75 -40.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069842068.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.062 kcal (2) G-P(sol) polarization free energy of solvation -31.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds