Wall clock time and date at job start Tue Mar 31 2020 05:23:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38285 * 119.92946 * 2 1 4 4 C 1.38112 * 120.07474 * 179.71701 * 3 2 1 5 5 C 1.38895 * 119.92509 * 0.28288 * 4 3 2 6 6 N 1.39814 * 120.07582 * 180.02562 * 5 4 3 7 7 C 1.46498 * 120.00399 * 172.72691 * 6 5 4 8 8 C 1.50697 * 109.47181 * 95.74774 * 7 6 5 9 9 H 1.08004 * 119.99639 * 359.97438 * 8 7 6 10 10 C 1.37874 * 120.00151 * 180.02562 * 8 7 6 11 11 N 1.31513 * 120.00303 * 0.02562 * 10 8 7 12 12 Si 1.86809 * 120.00102 * 179.97438 * 10 8 7 13 13 H 1.48497 * 109.46825 * 60.00150 * 12 10 8 14 14 H 1.48495 * 109.47195 * 180.02562 * 12 10 8 15 15 H 1.48500 * 109.47175 * 300.00322 * 12 10 8 16 16 C 1.34781 * 119.99950 * 352.73145 * 6 5 4 17 17 O 1.21643 * 119.99407 * 5.64798 * 16 6 5 18 18 C 1.47120 * 120.00050 * 185.65245 * 16 6 5 19 19 C 1.35781 * 125.12683 * 175.13166 * 18 16 6 20 20 C 1.46417 * 106.13785 * 179.89853 * 19 18 16 21 21 N 1.32942 * 133.89131 * 180.10171 * 20 19 18 22 22 C 1.31434 * 121.38623 * 180.29126 * 21 20 19 23 23 C 1.50704 * 119.41101 * 179.97438 * 22 21 20 24 24 C 1.38863 * 121.18123 * 359.97438 * 22 21 20 25 25 C 1.38214 * 119.71441 * 0.02562 * 24 22 21 26 26 C 1.39286 * 118.33420 * 359.95869 * 25 24 22 27 27 O 1.34590 * 133.42370 * 180.02562 * 26 25 24 28 28 C 1.38903 * 119.85728 * 359.97438 * 5 4 3 29 29 C 1.38112 * 119.92356 * 0.02562 * 28 5 4 30 30 H 1.09006 * 109.47083 * 89.99919 * 1 2 3 31 31 H 1.08998 * 109.47606 * 210.00235 * 1 2 3 32 32 H 1.09005 * 109.47291 * 330.00765 * 1 2 3 33 33 H 1.08004 * 119.96428 * 359.97438 * 3 2 1 34 34 H 1.08000 * 120.03852 * 180.29502 * 4 3 2 35 35 H 1.09004 * 109.47516 * 215.74559 * 7 6 5 36 36 H 1.09002 * 109.46962 * 335.74539 * 7 6 5 37 37 H 0.97000 * 120.00566 * 180.02562 * 11 10 8 38 38 H 1.07997 * 126.93466 * 0.02562 * 19 18 16 39 39 H 1.09003 * 109.46875 * 89.99840 * 23 22 21 40 40 H 1.08997 * 109.47282 * 209.99504 * 23 22 21 41 41 H 1.09002 * 109.46710 * 330.00042 * 23 22 21 42 42 H 1.08003 * 120.14235 * 180.02562 * 24 22 21 43 43 H 1.08001 * 120.83269 * 180.02562 * 25 24 22 44 44 H 1.07999 * 120.04513 * 179.97438 * 28 5 4 45 45 H 1.07996 * 119.96318 * 179.97438 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1969 1.1984 0.0000 4 6 3.5780 1.2019 0.0059 5 6 4.2739 -0.0001 0.0059 6 7 5.6721 -0.0002 0.0124 7 6 6.4038 -1.2591 0.1730 8 6 6.7845 -1.7954 -1.1829 9 1 6.5085 -1.2529 -2.0750 10 6 7.4841 -2.9791 -1.2845 11 7 7.8188 -3.6405 -0.1982 12 14 7.9554 -3.6443 -2.9653 13 1 8.8169 -2.6572 -3.6644 14 1 8.6961 -4.9209 -2.8026 15 1 6.7273 -3.8835 -3.7651 16 6 6.3467 1.1580 -0.1290 17 8 5.7431 2.2136 -0.1591 18 6 7.8131 1.1454 -0.2471 19 6 8.5870 2.2352 -0.4863 20 6 9.9693 1.7534 -0.5192 21 7 11.1463 2.3420 -0.7078 22 6 12.2660 1.6539 -0.6924 23 6 13.5756 2.3666 -0.9118 24 6 12.2639 0.2820 -0.4777 25 6 11.0664 -0.3781 -0.2764 26 6 9.8896 0.3667 -0.2955 27 8 8.5911 0.0493 -0.1388 28 6 3.5779 -1.2021 0.0005 29 6 2.1968 -1.1985 -0.0054 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3634 -0.8899 0.5138 32 1 -0.3634 0.8901 0.5137 33 1 1.6551 2.1328 -0.0004 34 1 4.1162 2.1382 0.0107 35 1 7.3051 -1.0832 0.7603 36 1 5.7716 -1.9839 0.6861 37 1 8.3113 -4.4731 -0.2696 38 1 8.2511 3.2525 -0.6225 39 1 13.9747 2.6967 0.0473 40 1 14.2841 1.6872 -1.3856 41 1 13.4152 3.2314 -1.5556 42 1 13.1941 -0.2668 -0.4681 43 1 11.0438 -1.4446 -0.1074 44 1 4.1160 -2.1385 0.0001 45 1 1.6550 -2.1328 -0.0100 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069874720.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:17 Heat of formation + Delta-G solvation = 52.304531 kcal Electronic energy + Delta-G solvation = -30428.150276 eV Core-core repulsion = 26378.017275 eV Total energy + Delta-G solvation = -4050.133001 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 350.142 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.33946 -40.30006 -38.87383 -38.04658 -35.67731 -32.98372 -32.90393 -32.29710 -31.54620 -30.54687 -30.35858 -27.85575 -27.57236 -26.10922 -24.08450 -23.48809 -22.30226 -21.82710 -21.78332 -20.74184 -19.82083 -17.69221 -17.27918 -16.90986 -16.74790 -15.96265 -15.76803 -15.42560 -14.98405 -14.69996 -14.59281 -14.46967 -13.97892 -13.72391 -13.60695 -13.45048 -13.18512 -13.06868 -12.86162 -12.72160 -12.53119 -12.37097 -12.18158 -12.11697 -11.97679 -11.90024 -11.57931 -11.31381 -11.12945 -10.79858 -10.63997 -10.36488 -10.33304 -10.15881 -9.29422 -9.19425 -9.14587 -8.67703 -8.56023 -8.45264 -8.37503 -7.25284 -6.28327 -4.34651 0.66755 1.32284 1.64201 1.91085 2.18808 2.76599 3.17295 3.21436 3.24196 3.33612 3.49850 3.86601 4.08006 4.24757 4.34323 4.69117 4.70621 4.90637 5.05930 5.09465 5.23435 5.27229 5.31014 5.40583 5.50687 5.53187 5.54536 5.59546 5.75856 5.77296 5.87899 5.89024 5.99857 6.05355 6.07073 6.13641 6.17272 6.37355 6.43317 6.54009 6.67874 6.81600 6.85359 7.02067 7.05469 7.19461 7.31330 7.60860 7.67409 7.85481 7.85780 8.02338 8.39229 8.68262 9.31001 10.78767 Molecular weight = 350.14amu Principal moments of inertia in cm(-1) A = 0.011318 B = 0.003715 C = 0.002934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2473.266864 B = 7535.988936 C = 9540.714629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.126 4.126 3 C -0.106 4.106 4 C -0.172 4.172 5 C 0.159 3.841 6 N -0.519 5.519 7 C 0.223 3.777 8 C -0.530 4.530 9 H 0.059 0.941 10 C 0.074 3.926 11 N -0.887 5.887 12 Si 0.890 3.110 13 H -0.276 1.276 14 H -0.284 1.284 15 H -0.274 1.274 16 C 0.595 3.405 17 O -0.517 6.517 18 C 0.022 3.978 19 C -0.130 4.130 20 C 0.063 3.937 21 N -0.446 5.446 22 C 0.118 3.882 23 C -0.097 4.097 24 C -0.151 4.151 25 C -0.050 4.050 26 C 0.017 3.983 27 O -0.117 6.117 28 C -0.136 4.136 29 C -0.103 4.103 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.117 0.883 34 H 0.178 0.822 35 H 0.059 0.941 36 H 0.053 0.947 37 H 0.266 0.734 38 H 0.172 0.828 39 H 0.076 0.924 40 H 0.074 0.926 41 H 0.075 0.925 42 H 0.145 0.855 43 H 0.149 0.851 44 H 0.140 0.860 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.799 6.084 1.523 6.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.127 4.127 3 C -0.125 4.125 4 C -0.191 4.191 5 C 0.064 3.936 6 N -0.236 5.236 7 C 0.105 3.895 8 C -0.568 4.568 9 H 0.078 0.922 10 C -0.129 4.129 11 N -0.525 5.525 12 Si 0.718 3.282 13 H -0.201 1.201 14 H -0.209 1.209 15 H -0.199 1.199 16 C 0.384 3.616 17 O -0.398 6.398 18 C -0.031 4.031 19 C -0.152 4.152 20 C -0.067 4.067 21 N -0.157 5.157 22 C -0.029 4.029 23 C -0.154 4.154 24 C -0.171 4.171 25 C -0.076 4.076 26 C -0.035 4.035 27 O -0.014 6.014 28 C -0.156 4.156 29 C -0.122 4.122 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.135 0.865 34 H 0.195 0.805 35 H 0.077 0.923 36 H 0.071 0.929 37 H 0.076 0.924 38 H 0.189 0.811 39 H 0.094 0.906 40 H 0.093 0.907 41 H 0.094 0.906 42 H 0.163 0.837 43 H 0.167 0.833 44 H 0.158 0.842 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 1.512 7.019 1.505 7.336 hybrid contribution 0.373 -1.625 -0.922 1.905 sum 1.885 5.395 0.583 5.744 Atomic orbital electron populations 1.20679 0.91918 1.01995 1.01605 1.19834 0.95573 0.93496 1.03773 1.20900 0.93846 0.96936 1.00791 1.22666 0.94460 0.99957 1.02017 1.17992 0.81952 0.94545 0.99098 1.45907 1.04614 1.09898 1.63216 1.19999 0.92053 0.78450 0.98992 1.21189 1.36683 1.07313 0.91639 0.92237 1.24785 0.95158 0.96205 0.96791 1.69903 1.38761 1.16303 1.27541 0.86658 0.79030 0.78325 0.84222 1.20109 1.20911 1.19921 1.16872 0.83496 0.83749 0.77437 1.90448 1.65388 1.31693 1.52310 1.21850 0.91733 0.85117 1.04447 1.22270 0.88205 0.99699 1.05000 1.20559 0.92746 0.90074 1.03270 1.66763 0.96541 1.39709 1.12683 1.21195 0.93670 0.90907 0.97163 1.20643 0.91432 1.00594 1.02733 1.21776 0.97915 0.95091 1.02294 1.20570 0.87810 1.01012 0.98193 1.20764 0.85723 0.94937 1.02065 1.84817 1.13367 1.31480 1.71780 1.21116 0.94098 0.97601 1.02750 1.20750 0.93351 0.97205 1.00858 0.91918 0.92112 0.92164 0.86542 0.80539 0.92321 0.92902 0.92388 0.81073 0.90565 0.90700 0.90588 0.83737 0.83338 0.84247 0.86298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.19 10.01 36.00 0.36 -0.83 16 2 C -0.13 -1.90 5.88 -104.59 -0.62 -2.51 16 3 C -0.11 -1.69 9.69 -39.61 -0.38 -2.07 16 4 C -0.17 -3.21 9.05 -39.38 -0.36 -3.56 16 5 C 0.16 3.23 6.49 -83.73 -0.54 2.69 16 6 N -0.52 -11.20 2.69 -116.05 -0.31 -11.52 16 7 C 0.22 5.21 4.21 -5.20 -0.02 5.18 16 8 C -0.53 -13.39 7.99 -34.44 -0.28 -13.67 16 9 H 0.06 1.58 7.81 -52.48 -0.41 1.17 16 10 C 0.07 1.89 5.46 -17.82 -0.10 1.79 16 11 N -0.89 -23.17 13.29 55.43 0.74 -22.43 16 12 Si 0.89 20.24 29.54 -169.99 -5.02 15.22 16 13 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 14 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 15 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 16 C 0.59 12.49 7.55 -12.65 -0.10 12.40 16 17 O -0.52 -10.72 13.23 5.24 0.07 -10.65 16 18 C 0.02 0.44 6.65 -36.86 -0.25 0.20 16 19 C -0.13 -2.39 10.81 -37.17 -0.40 -2.79 16 20 C 0.06 1.17 7.52 -83.17 -0.63 0.54 16 21 N -0.45 -7.62 10.32 -6.13 -0.06 -7.68 16 22 C 0.12 1.64 6.78 -82.53 -0.56 1.08 16 23 C -0.10 -0.92 10.16 36.01 0.37 -0.55 16 24 C -0.15 -1.99 9.71 -39.36 -0.38 -2.37 16 25 C -0.05 -0.81 10.19 -39.20 -0.40 -1.21 16 26 C 0.02 0.32 7.42 -38.27 -0.28 0.04 16 27 O -0.12 -2.52 6.23 3.39 0.02 -2.50 16 28 C -0.14 -2.58 9.16 -39.38 -0.36 -2.94 16 29 C -0.10 -1.66 9.69 -39.61 -0.38 -2.05 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.62 8.09 -51.93 -0.42 0.20 16 32 H 0.06 0.60 8.08 -51.93 -0.42 0.18 16 33 H 0.12 1.55 8.06 -52.48 -0.42 1.13 16 34 H 0.18 3.42 4.53 -56.24 -0.25 3.17 16 35 H 0.06 1.44 5.68 -51.93 -0.30 1.15 16 36 H 0.05 1.27 6.21 -51.93 -0.32 0.95 16 37 H 0.27 6.66 8.31 -40.82 -0.34 6.32 16 38 H 0.17 2.76 8.06 -52.49 -0.42 2.34 16 39 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.07 0.54 8.07 -51.93 -0.42 0.12 16 41 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.14 1.35 8.06 -52.48 -0.42 0.92 16 43 H 0.15 2.29 8.06 -52.49 -0.42 1.87 16 44 H 0.14 2.80 6.24 -52.49 -0.33 2.47 16 45 H 0.12 1.63 8.06 -52.49 -0.42 1.21 16 LS Contribution 378.78 15.07 5.71 5.71 Total: -1.00 -28.70 378.78 -9.55 -38.25 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -5.39 Total: 6.23 kcal Atomic # 6 Polarization: -5.33 SS G_CDS: -5.31 Total: -10.63 kcal Atomic # 7 Polarization: -41.99 SS G_CDS: 0.36 Total: -41.63 kcal Atomic # 8 Polarization: -13.24 SS G_CDS: 0.09 Total: -13.15 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.22 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -28.70 -9.55 -38.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069874720.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.558 kcal (2) G-P(sol) polarization free energy of solvation -28.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.254 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds