Wall clock time and date at job start Tue Mar 31 2020 06:09:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46498 * 109.47283 * 2 1 4 4 C 1.46500 * 120.00153 * 275.00020 * 3 2 1 5 5 C 1.50700 * 109.47414 * 275.00323 * 4 3 2 6 6 H 1.08000 * 119.99940 * 359.97438 * 5 4 3 7 7 C 1.37877 * 120.00302 * 180.02562 * 5 4 3 8 8 N 1.31511 * 120.00223 * 179.97438 * 7 5 4 9 9 Si 1.86802 * 119.99697 * 359.97438 * 7 5 4 10 10 H 1.48500 * 109.47431 * 90.00224 * 9 7 5 11 11 H 1.48501 * 109.47122 * 209.99902 * 9 7 5 12 12 H 1.48498 * 109.47199 * 329.99763 * 9 7 5 13 13 S 1.65595 * 120.00006 * 95.00328 * 3 2 1 14 14 O 1.42092 * 104.28096 * 153.92930 * 13 3 2 15 15 O 1.42105 * 104.27825 * 26.06711 * 13 3 2 16 16 C 1.81399 * 104.44804 * 269.99989 * 13 3 2 17 17 C 1.50702 * 109.47418 * 179.97438 * 16 13 3 18 18 C 1.38255 * 120.00225 * 89.99855 * 17 16 13 19 19 C 1.38207 * 120.00357 * 179.72454 * 18 17 16 20 20 C 1.38262 * 119.99549 * 359.97438 * 19 18 17 21 21 C 1.38204 * 120.00515 * 359.97438 * 20 19 18 22 22 C 1.38220 * 120.00039 * 269.72806 * 17 16 13 23 23 C 1.50706 * 119.99654 * 0.27115 * 22 17 16 24 24 F 1.39900 * 109.46715 * 180.02562 * 23 22 17 25 25 F 1.39892 * 109.47574 * 300.00169 * 23 22 17 26 26 F 1.39903 * 109.46925 * 60.00477 * 23 22 17 27 27 H 1.09008 * 109.47582 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47181 * 299.99574 * 1 2 3 29 29 H 1.09001 * 109.47444 * 59.99929 * 1 2 3 30 30 H 1.09011 * 109.47235 * 240.00099 * 2 1 3 31 31 H 1.09005 * 109.47211 * 120.00529 * 2 1 3 32 32 H 1.09003 * 109.46775 * 34.99784 * 4 3 2 33 33 H 1.08996 * 109.47157 * 154.99900 * 4 3 2 34 34 H 0.97001 * 119.99996 * 179.97438 * 8 7 5 35 35 H 1.09003 * 109.47114 * 60.00075 * 16 13 3 36 36 H 1.09001 * 109.47552 * 300.00261 * 16 13 3 37 37 H 1.08000 * 119.99309 * 359.70262 * 18 17 16 38 38 H 1.07991 * 120.00400 * 179.97438 * 19 18 17 39 39 H 1.08012 * 119.99531 * 179.97438 * 20 19 18 40 40 H 1.08005 * 120.00220 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1582 2.1087 -1.2639 5 6 3.4947 1.7888 -1.8824 6 1 4.1723 1.1116 -1.3837 7 6 3.8529 2.3613 -3.0844 8 7 5.0194 2.0825 -3.6239 9 14 2.6812 3.5332 -3.9466 10 1 2.9449 4.9216 -3.4906 11 1 2.8863 3.4471 -5.4149 12 1 1.2808 3.1624 -3.6200 13 16 2.4122 2.1201 1.4286 14 8 3.3702 3.1034 1.0621 15 8 2.7577 1.0475 2.2944 16 6 0.8701 2.9054 1.9723 17 6 1.1030 3.6186 3.2793 18 6 1.5066 4.9409 3.2829 19 6 1.7148 5.5967 4.4815 20 6 1.5189 4.9304 5.6771 21 6 1.1144 3.6089 5.6736 22 6 0.9078 2.9524 4.4745 23 6 0.4679 1.5110 4.4705 24 9 0.3384 1.0594 5.7883 25 9 -0.7642 1.4012 3.8173 26 9 1.4208 0.7345 3.8025 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8901 31 1 1.8933 -0.5139 0.8900 32 1 1.3617 1.8097 -1.9453 33 1 2.0922 3.1802 -1.0756 34 1 5.2712 2.4851 -4.4698 35 1 0.1020 2.1436 2.1064 36 1 0.5427 3.6228 1.2198 37 1 1.6595 5.4613 2.3489 38 1 2.0304 6.6295 4.4844 39 1 1.6819 5.4428 6.6138 40 1 0.9618 3.0883 6.6075 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071904713.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:04 Heat of formation + Delta-G solvation = -179.790655 kcal Electronic energy + Delta-G solvation = -31018.985250 eV Core-core repulsion = 26318.823301 eV Total energy + Delta-G solvation = -4700.161949 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 351.090 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -50.19070 -47.76980 -47.47542 -39.82258 -36.64030 -36.25487 -35.34487 -33.51421 -32.59617 -32.12700 -30.29841 -28.03253 -27.16669 -25.88223 -22.98335 -22.65351 -21.99057 -21.41220 -18.61183 -18.50040 -18.42827 -18.07625 -17.17382 -16.99594 -16.49655 -15.95681 -15.80721 -15.43526 -15.01785 -14.52530 -14.42657 -14.29820 -14.13026 -14.06187 -13.80159 -13.68036 -13.64660 -13.42022 -13.17859 -12.86957 -12.80559 -12.62355 -12.52669 -12.02859 -11.99467 -11.70625 -11.46616 -11.41734 -11.29550 -11.11423 -10.98170 -10.91067 -10.48281 -10.38326 -10.19558 -9.55722 -9.53320 -9.12273 -8.59506 -8.12815 -6.07651 -4.06582 0.33321 0.72656 1.04271 2.58755 3.14313 3.18501 3.26160 3.29894 3.33987 3.61450 3.90392 4.01467 4.20882 4.31460 4.37328 4.55369 4.62552 4.68398 4.93643 5.01924 5.11474 5.14472 5.22552 5.33745 5.43425 5.56785 5.61336 5.64726 5.82633 5.88156 5.94266 6.02717 6.19858 6.41010 6.44876 6.50919 6.69703 7.04079 7.33990 7.57025 8.49762 8.98881 9.50915 11.06042 Molecular weight = 351.09amu Principal moments of inertia in cm(-1) A = 0.015762 B = 0.004259 C = 0.003748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.044324 B = 6573.098587 C = 7468.926259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.113 3.887 3 N -0.974 5.974 4 C 0.224 3.776 5 C -0.527 4.527 6 H 0.079 0.921 7 C 0.073 3.927 8 N -0.895 5.895 9 Si 0.869 3.131 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.265 1.265 13 S 2.600 3.400 14 O -0.926 6.926 15 O -0.941 6.941 16 C -0.633 4.633 17 C -0.029 4.029 18 C -0.109 4.109 19 C -0.084 4.084 20 C -0.120 4.120 21 C -0.072 4.072 22 C -0.177 4.177 23 C 0.484 3.516 24 F -0.180 7.180 25 F -0.180 7.180 26 F -0.130 7.130 27 H 0.065 0.935 28 H 0.044 0.956 29 H 0.062 0.938 30 H 0.091 0.909 31 H 0.085 0.915 32 H 0.036 0.964 33 H 0.028 0.972 34 H 0.265 0.735 35 H 0.142 0.858 36 H 0.149 0.851 37 H 0.145 0.855 38 H 0.139 0.861 39 H 0.138 0.862 40 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.046 3.927 17.584 22.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.014 4.014 3 N -0.812 5.812 4 C 0.101 3.899 5 C -0.566 4.566 6 H 0.097 0.903 7 C -0.129 4.129 8 N -0.533 5.533 9 Si 0.696 3.304 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.189 1.189 13 S 2.688 3.312 14 O -0.916 6.916 15 O -0.931 6.931 16 C -0.754 4.754 17 C -0.031 4.031 18 C -0.128 4.128 19 C -0.102 4.102 20 C -0.138 4.138 21 C -0.090 4.090 22 C -0.179 4.179 23 C 0.429 3.571 24 F -0.162 7.162 25 F -0.161 7.161 26 F -0.110 7.110 27 H 0.084 0.916 28 H 0.063 0.937 29 H 0.081 0.919 30 H 0.109 0.891 31 H 0.103 0.897 32 H 0.053 0.947 33 H 0.045 0.955 34 H 0.075 0.925 35 H 0.160 0.840 36 H 0.167 0.833 37 H 0.162 0.838 38 H 0.156 0.844 39 H 0.156 0.844 40 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -12.132 3.914 17.793 21.888 hybrid contribution -1.437 0.639 -0.765 1.749 sum -13.569 4.552 17.028 22.244 Atomic orbital electron populations 1.22318 0.97368 1.02035 1.01705 1.21263 0.92734 0.82790 1.04563 1.57273 1.81245 1.21217 1.21504 1.19483 0.98570 0.90888 0.80956 1.21344 1.00717 1.28843 1.05711 0.90265 1.24860 0.95044 0.96099 0.96940 1.69892 1.20508 1.44016 1.18895 0.86972 0.81865 0.82256 0.79354 1.19811 1.20908 1.18937 1.05549 0.76288 0.75394 0.73962 1.93640 1.54050 1.62558 1.81341 1.93588 1.80776 1.52502 1.66260 1.30403 1.27565 1.13773 1.03700 1.18769 0.98389 0.94672 0.91242 1.21280 0.98634 0.92939 0.99959 1.21437 0.96204 1.00572 0.91946 1.21246 0.99609 0.94043 0.98919 1.21031 0.96141 0.95022 0.96769 1.19971 1.09163 0.93000 0.95743 1.18659 0.75949 0.88319 0.74170 1.93139 1.95874 1.90650 1.36491 1.93144 1.45042 1.96797 1.81159 1.93642 1.61777 1.76856 1.78767 0.91621 0.93651 0.91928 0.89051 0.89678 0.94654 0.95464 0.92530 0.83987 0.83265 0.83763 0.84357 0.84427 0.83989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.34 10.24 37.15 0.38 -1.96 16 2 C 0.11 1.91 6.37 -4.05 -0.03 1.88 16 3 N -0.97 -19.38 2.70 -115.66 -0.31 -19.69 16 4 C 0.22 5.14 4.08 -5.19 -0.02 5.12 16 5 C -0.53 -14.88 9.94 -34.44 -0.34 -15.22 16 6 H 0.08 2.48 8.06 -52.49 -0.42 2.06 16 7 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 8 N -0.89 -27.37 13.96 55.43 0.77 -26.60 16 9 Si 0.87 20.64 27.47 -169.99 -4.67 15.97 16 10 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.26 -5.78 6.54 56.52 0.37 -5.41 16 13 S 2.60 49.90 5.31 -107.50 -0.57 49.33 16 14 O -0.93 -21.29 16.99 -57.54 -0.98 -22.26 16 15 O -0.94 -19.00 12.28 -57.54 -0.71 -19.70 16 16 C -0.63 -8.96 5.54 36.01 0.20 -8.77 16 17 C -0.03 -0.39 5.10 -104.62 -0.53 -0.93 16 18 C -0.11 -1.28 9.70 -39.59 -0.38 -1.66 16 19 C -0.08 -0.77 10.05 -39.58 -0.40 -1.16 16 20 C -0.12 -1.02 10.05 -39.58 -0.40 -1.42 16 21 C -0.07 -0.73 9.43 -39.59 -0.37 -1.11 16 22 C -0.18 -2.29 5.37 -104.62 -0.56 -2.85 16 23 C 0.48 6.61 2.81 36.01 0.10 6.71 16 24 F -0.18 -2.24 15.97 2.25 0.04 -2.21 16 25 F -0.18 -2.36 15.32 2.25 0.03 -2.32 16 26 F -0.13 -2.10 12.13 2.25 0.03 -2.08 16 27 H 0.06 0.74 8.14 -51.92 -0.42 0.31 16 28 H 0.04 0.56 6.96 -51.93 -0.36 0.19 16 29 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.09 1.60 8.11 -51.92 -0.42 1.18 16 31 H 0.08 1.40 6.82 -51.93 -0.35 1.05 16 32 H 0.04 0.76 7.17 -51.93 -0.37 0.39 16 33 H 0.03 0.61 7.03 -51.93 -0.37 0.25 16 34 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 35 H 0.14 1.84 4.32 -51.92 -0.22 1.62 16 36 H 0.15 1.77 8.09 -51.92 -0.42 1.35 16 37 H 0.14 1.52 8.06 -52.49 -0.42 1.09 16 38 H 0.14 0.86 8.06 -52.49 -0.42 0.43 16 39 H 0.14 0.72 8.06 -52.48 -0.42 0.30 16 40 H 0.14 1.15 7.16 -52.48 -0.38 0.77 16 LS Contribution 349.51 15.07 5.27 5.27 Total: -1.00 -34.59 349.51 -8.15 -42.74 By element: Atomic # 1 Polarization: 5.52 SS G_CDS: -4.60 Total: 0.92 kcal Atomic # 6 Polarization: -16.91 SS G_CDS: -2.45 Total: -19.36 kcal Atomic # 7 Polarization: -46.75 SS G_CDS: 0.46 Total: -46.29 kcal Atomic # 8 Polarization: -40.28 SS G_CDS: -1.68 Total: -41.97 kcal Atomic # 9 Polarization: -6.71 SS G_CDS: 0.10 Total: -6.61 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -4.67 Total: 15.97 kcal Atomic # 16 Polarization: 49.90 SS G_CDS: -0.57 Total: 49.33 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -34.59 -8.15 -42.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071904713.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.053 kcal (2) G-P(sol) polarization free energy of solvation -34.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds