Wall clock time and date at job start Tue Mar 31 2020 06:31:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35352 * 126.44258 * 2 1 4 4 C 1.41541 * 105.55728 * 180.13722 * 3 2 1 5 5 C 1.47648 * 126.44116 * 179.83925 * 4 3 2 6 6 O 1.21592 * 119.99920 * 359.71468 * 5 4 3 7 7 N 1.34778 * 119.99501 * 179.71209 * 5 4 3 8 8 C 1.40093 * 119.99528 * 179.97438 * 7 5 4 9 9 C 1.40423 * 125.97586 * 359.97438 * 8 7 5 10 10 C 1.35229 * 107.86434 * 179.76917 * 9 8 7 11 11 N 1.34966 * 107.86733 * 0.42228 * 10 9 8 12 12 C 1.46500 * 125.97782 * 179.83656 * 11 10 9 13 13 C 1.50706 * 109.47299 * 124.71059 * 12 11 10 14 14 H 1.07998 * 119.99503 * 0.02562 * 13 12 11 15 15 C 1.37871 * 120.00434 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99826 * 359.72891 * 15 13 12 17 17 Si 1.86800 * 120.00406 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47364 * 179.72558 * 17 15 13 19 19 H 1.48508 * 109.46883 * 299.72681 * 17 15 13 20 20 H 1.48497 * 109.46870 * 59.72491 * 17 15 13 21 21 N 1.31231 * 125.97407 * 180.02562 * 8 7 5 22 22 N 1.31858 * 107.11448 * 359.57965 * 4 3 2 23 23 N 1.28483 * 110.11987 * 0.26382 * 22 4 3 24 24 C 1.40106 * 124.95866 * 180.02562 * 23 22 4 25 25 C 1.38858 * 120.06675 * 144.69642 * 24 23 22 26 26 C 1.38116 * 119.93077 * 179.74759 * 25 24 23 27 27 C 1.38290 * 120.06675 * 0.53231 * 26 25 24 28 28 C 1.38281 * 120.13750 * 359.73985 * 27 26 25 29 29 C 1.38116 * 120.06790 * 359.97438 * 28 27 26 30 30 H 1.08993 * 109.47212 * 270.33161 * 1 2 3 31 31 H 1.09006 * 109.46509 * 30.33063 * 1 2 3 32 32 H 1.08994 * 109.47147 * 150.32588 * 1 2 3 33 33 H 1.07997 * 127.21915 * 359.97438 * 3 2 1 34 34 H 0.97001 * 120.00216 * 0.02562 * 7 5 4 35 35 H 1.07998 * 126.06562 * 0.04219 * 9 8 7 36 36 H 1.08004 * 126.06695 * 180.25311 * 10 9 8 37 37 H 1.09004 * 109.47078 * 4.71821 * 12 11 10 38 38 H 1.08993 * 109.47364 * 244.71592 * 12 11 10 39 39 H 0.97000 * 120.00236 * 0.27947 * 16 15 13 40 40 H 1.07992 * 120.03834 * 0.02562 * 25 24 23 41 41 H 1.08003 * 119.97340 * 180.27500 * 26 25 24 42 42 H 1.07999 * 119.93383 * 179.76635 * 27 26 25 43 43 H 1.07998 * 119.96529 * 179.97438 * 28 27 26 44 44 H 1.07997 * 120.03244 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3110 1.0888 0.0000 4 6 3.6334 0.5843 -0.0033 5 6 4.8763 1.3813 -0.0079 6 8 4.8195 2.5959 -0.0144 7 7 6.0736 0.7625 -0.0048 8 6 7.2528 1.5188 -0.0097 9 6 7.3337 2.9207 -0.0184 10 6 8.6426 3.2607 -0.0155 11 7 9.3664 2.1216 -0.0149 12 6 10.8286 2.0309 -0.0154 13 6 11.2804 1.1933 1.1531 14 1 10.5513 0.7704 1.8283 15 6 12.6245 0.9668 1.3602 16 7 13.5122 1.4774 0.5349 17 14 13.1846 -0.0720 2.8081 18 1 14.6664 -0.1688 2.8042 19 1 12.7330 0.5593 4.0743 20 1 12.5994 -1.4323 2.6970 21 7 8.4751 1.0410 -0.0079 22 7 3.5467 -0.7314 0.0043 23 7 2.3139 -1.0931 0.0063 24 6 1.8668 -2.4209 0.0144 25 6 0.7152 -2.7630 0.7108 26 6 0.2741 -4.0718 0.7126 27 6 0.9842 -5.0432 0.0309 28 6 2.1345 -4.7067 -0.6589 29 6 2.5774 -3.3985 -0.6693 30 1 -0.3633 0.0059 1.0276 31 1 -0.3632 0.8871 -0.5190 32 1 -0.3633 -0.8928 -0.5087 33 1 2.0072 2.1252 -0.0004 34 1 6.1188 -0.2064 0.0001 35 1 6.4988 3.6057 -0.0218 36 1 9.0385 4.2656 -0.0166 37 1 11.2546 3.0308 0.0681 38 1 11.1637 1.5696 -0.9443 39 1 13.2214 2.0166 -0.2172 40 1 0.1625 -2.0057 1.2468 41 1 -0.6239 -4.3379 1.2504 42 1 0.6394 -6.0667 0.0368 43 1 2.6870 -5.4676 -1.1900 44 1 3.4756 -3.1363 -1.2086 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071910458.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:16 Heat of formation + Delta-G solvation = 160.309330 kcal Electronic energy + Delta-G solvation = -28643.564997 eV Core-core repulsion = 24564.982276 eV Total energy + Delta-G solvation = -4078.582721 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 351.144 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.26979 -40.67934 -39.65350 -38.95082 -34.84548 -34.14527 -33.61820 -33.30907 -31.44798 -30.93190 -29.73162 -29.35134 -27.55839 -26.46569 -24.97632 -23.55104 -23.09255 -22.41861 -21.22694 -20.93195 -20.18914 -19.29033 -18.15118 -17.22927 -17.15920 -16.75693 -16.68837 -16.36251 -15.42684 -15.22994 -14.97556 -14.93539 -14.28132 -14.20464 -14.00948 -13.88210 -13.75895 -13.55775 -13.52728 -13.23158 -13.10490 -12.76813 -12.40883 -12.22283 -12.09695 -11.81839 -11.74232 -11.16030 -11.11244 -10.79699 -10.46166 -10.35907 -10.14239 -10.13669 -9.73874 -9.60579 -9.30850 -8.98077 -8.83201 -8.55744 -8.17333 -7.49489 -6.55751 -4.29496 0.31795 0.73171 1.42506 1.79414 1.96514 2.68359 2.75729 3.10049 3.17868 3.39840 3.41818 3.60421 3.76125 3.79924 4.04402 4.15841 4.29743 4.36335 4.43323 4.52860 4.56690 4.75874 4.84370 4.98214 5.00799 5.13396 5.18114 5.24920 5.35487 5.39972 5.48517 5.57523 5.68429 5.73367 5.75366 5.88431 6.06557 6.16124 6.20822 6.43267 6.52057 6.59177 6.64025 6.77784 7.34190 7.44036 7.59783 7.75319 7.86059 8.21041 8.37187 8.56825 8.64804 9.38514 10.81826 Molecular weight = 351.14amu Principal moments of inertia in cm(-1) A = 0.012510 B = 0.002102 C = 0.001859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2237.755160 B =13317.110954 C =15060.887339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.013 3.987 3 C -0.166 4.166 4 C 0.003 3.997 5 C 0.612 3.388 6 O -0.507 6.507 7 N -0.617 5.617 8 C 0.260 3.740 9 C -0.284 4.284 10 C 0.051 3.949 11 N -0.317 5.317 12 C 0.249 3.751 13 C -0.607 4.607 14 H 0.063 0.937 15 C 0.022 3.978 16 N -0.905 5.905 17 Si 1.077 2.923 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.285 1.285 21 N -0.299 5.299 22 N -0.255 5.255 23 N -0.234 5.234 24 C 0.130 3.870 25 C -0.120 4.120 26 C -0.103 4.103 27 C -0.113 4.113 28 C -0.101 4.101 29 C -0.100 4.100 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.074 0.926 33 H 0.170 0.830 34 H 0.417 0.583 35 H 0.162 0.838 36 H 0.169 0.831 37 H 0.047 0.953 38 H 0.035 0.965 39 H 0.267 0.733 40 H 0.136 0.864 41 H 0.135 0.865 42 H 0.131 0.869 43 H 0.136 0.864 44 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.606 -9.067 -2.258 32.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.108 4.108 3 C -0.194 4.194 4 C -0.158 4.158 5 C 0.396 3.604 6 O -0.379 6.379 7 N -0.264 5.264 8 C 0.006 3.994 9 C -0.315 4.315 10 C -0.098 4.098 11 N -0.098 5.098 12 C 0.131 3.869 13 C -0.645 4.645 14 H 0.082 0.918 15 C -0.182 4.182 16 N -0.541 5.541 17 Si 0.904 3.096 18 H -0.205 1.205 19 H -0.212 1.212 20 H -0.211 1.211 21 N -0.130 5.130 22 N -0.088 5.088 23 N -0.017 5.017 24 C 0.040 3.960 25 C -0.140 4.140 26 C -0.121 4.121 27 C -0.132 4.132 28 C -0.120 4.120 29 C -0.120 4.120 30 H 0.100 0.900 31 H 0.108 0.892 32 H 0.093 0.907 33 H 0.188 0.812 34 H 0.253 0.747 35 H 0.180 0.820 36 H 0.186 0.814 37 H 0.064 0.936 38 H 0.053 0.947 39 H 0.077 0.923 40 H 0.154 0.846 41 H 0.153 0.847 42 H 0.149 0.851 43 H 0.154 0.846 44 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -28.805 -10.861 -1.514 30.822 hybrid contribution -2.120 1.541 -0.755 2.728 sum -30.925 -9.320 -2.269 32.379 Atomic orbital electron populations 1.20523 0.86358 1.04310 1.03368 1.21631 0.95578 0.85815 1.07733 1.21541 0.90029 0.99760 1.08024 1.21789 0.94911 0.89463 1.09685 1.16661 0.80767 0.86359 0.76647 1.90742 1.86004 1.12506 1.48608 1.42232 1.02304 1.10395 1.71465 1.19053 0.86069 0.90769 1.03474 1.21542 0.96730 0.93509 1.19747 1.22559 0.91714 0.93058 1.02519 1.48804 1.07442 1.01598 1.52001 1.19767 0.68992 0.98870 0.99280 1.22107 0.95151 1.35264 1.12015 0.91837 1.25921 0.92370 0.97705 1.02211 1.70851 1.36528 1.31918 1.14753 0.83422 0.76153 0.75759 0.74306 1.20531 1.21237 1.21137 1.77379 0.96450 1.11421 1.27721 1.73649 1.01237 1.14772 1.19116 1.42677 1.03059 1.04759 1.51251 1.17590 0.96798 0.80471 1.01169 1.21132 0.96005 0.97880 0.99023 1.21052 1.00186 0.91724 0.99155 1.21364 0.95078 0.99978 0.96762 1.21153 0.96451 0.95510 0.98886 1.21130 1.00170 0.92394 0.98286 0.90038 0.89218 0.90680 0.81248 0.74671 0.82029 0.81397 0.93564 0.94735 0.92288 0.84600 0.84696 0.85076 0.84640 0.84397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.45 8.58 36.01 0.31 -0.14 16 2 C 0.01 0.13 6.75 -81.83 -0.55 -0.43 16 3 C -0.17 -1.91 10.72 -39.35 -0.42 -2.34 16 4 C 0.00 0.04 7.13 -82.76 -0.59 -0.55 16 5 C 0.61 10.33 7.79 -12.42 -0.10 10.23 16 6 O -0.51 -9.46 14.05 5.29 0.07 -9.39 16 7 N -0.62 -11.06 5.44 -12.04 -0.07 -11.12 16 8 C 0.26 5.56 8.11 -154.44 -1.25 4.31 16 9 C -0.28 -5.85 9.60 -39.83 -0.38 -6.23 16 10 C 0.05 1.05 11.43 -17.24 -0.20 0.86 16 11 N -0.32 -7.63 3.67 -62.56 -0.23 -7.86 16 12 C 0.25 6.43 5.57 -5.19 -0.03 6.41 16 13 C -0.61 -17.41 9.24 -34.44 -0.32 -17.73 16 14 H 0.06 1.91 7.81 -52.49 -0.41 1.50 16 15 C 0.02 0.64 5.46 -17.82 -0.10 0.54 16 16 N -0.91 -26.67 13.65 55.43 0.76 -25.92 16 17 Si 1.08 25.37 29.90 -169.99 -5.08 20.29 16 18 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 19 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 20 H -0.29 -6.53 7.11 56.52 0.40 -6.12 16 21 N -0.30 -7.25 12.42 31.43 0.39 -6.86 16 22 N -0.25 -3.44 11.29 33.42 0.38 -3.06 16 23 N -0.23 -2.60 3.47 -6.85 -0.02 -2.63 16 24 C 0.13 1.18 6.20 -83.62 -0.52 0.66 16 25 C -0.12 -0.78 8.21 -39.40 -0.32 -1.11 16 26 C -0.10 -0.50 10.04 -39.61 -0.40 -0.90 16 27 C -0.11 -0.56 10.04 -39.55 -0.40 -0.96 16 28 C -0.10 -0.63 10.04 -39.61 -0.40 -1.03 16 29 C -0.10 -0.85 9.68 -39.40 -0.38 -1.24 16 30 H 0.08 0.30 7.69 -51.93 -0.40 -0.10 16 31 H 0.09 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.07 0.33 6.85 -51.93 -0.36 -0.03 16 33 H 0.17 1.67 8.06 -52.49 -0.42 1.24 16 34 H 0.42 6.78 8.54 -40.82 -0.35 6.43 16 35 H 0.16 3.18 5.91 -52.49 -0.31 2.87 16 36 H 0.17 2.80 8.06 -52.48 -0.42 2.37 16 37 H 0.05 1.15 7.94 -51.93 -0.41 0.74 16 38 H 0.03 0.93 8.00 -51.93 -0.42 0.51 16 39 H 0.27 7.69 7.22 -40.82 -0.29 7.40 16 40 H 0.14 0.68 6.02 -52.49 -0.32 0.36 16 41 H 0.14 0.32 8.06 -52.48 -0.42 -0.10 16 42 H 0.13 0.34 8.06 -52.49 -0.42 -0.08 16 43 H 0.14 0.58 8.06 -52.49 -0.42 0.15 16 44 H 0.14 1.25 8.00 -52.49 -0.42 0.83 16 LS Contribution 382.24 15.07 5.76 5.76 Total: -1.00 -35.61 382.24 -9.10 -44.71 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: -5.02 Total: 5.70 kcal Atomic # 6 Polarization: -3.59 SS G_CDS: -6.04 Total: -9.63 kcal Atomic # 7 Polarization: -58.65 SS G_CDS: 1.21 Total: -57.44 kcal Atomic # 8 Polarization: -9.46 SS G_CDS: 0.07 Total: -9.39 kcal Atomic # 14 Polarization: 25.37 SS G_CDS: -5.08 Total: 20.29 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -35.61 -9.10 -44.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071910458.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 205.018 kcal (2) G-P(sol) polarization free energy of solvation -35.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 169.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.709 kcal (6) G-S(sol) free energy of system = (1) + (5) 160.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds