Wall clock time and date at job start Tue Mar 31 2020 06:32:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30824 * 126.43666 * 2 1 4 4 N 1.28926 * 109.73951 * 180.13226 * 3 2 1 5 5 C 1.29728 * 109.42771 * 0.10931 * 4 3 2 6 6 N 1.34787 * 126.44124 * 180.02562 * 2 1 3 7 7 C 1.46218 * 128.60684 * 359.53914 * 6 2 1 8 8 C 1.53337 * 109.17364 * 161.62052 * 7 6 2 9 9 N 1.47077 * 109.24219 * 45.66897 * 8 7 6 10 10 C 1.34774 * 120.94374 * 116.43190 * 9 8 7 11 11 O 1.21670 * 120.00296 * 4.91109 * 10 9 8 12 12 C 1.46939 * 119.99616 * 184.91024 * 10 9 8 13 13 C 1.36377 * 126.73097 * 323.65567 * 12 10 9 14 14 N 1.35883 * 109.73603 * 180.02562 * 13 12 10 15 15 C 1.37121 * 124.84589 * 180.26423 * 14 13 12 16 16 H 1.08006 * 120.00668 * 157.35547 * 15 14 13 17 17 C 1.38992 * 119.99971 * 337.35892 * 15 14 13 18 18 N 1.31335 * 119.99988 * 163.71231 * 17 15 14 19 19 Si 1.86793 * 119.99759 * 343.71816 * 17 15 14 20 20 H 1.48494 * 109.47420 * 93.42565 * 19 17 15 21 21 H 1.48501 * 109.47003 * 213.42798 * 19 17 15 22 22 H 1.48501 * 109.47146 * 333.42581 * 19 17 15 23 23 C 1.38317 * 110.31607 * 0.02562 * 14 13 12 24 24 C 1.39011 * 133.16187 * 180.02562 * 23 14 13 25 25 C 1.37899 * 119.93336 * 179.97438 * 24 23 14 26 26 C 1.38676 * 120.60640 * 359.97438 * 25 24 23 27 27 C 1.37888 * 120.28899 * 0.02740 * 26 25 24 28 28 C 1.39183 * 119.67902 * 359.97438 * 27 26 25 29 29 C 1.47525 * 118.11027 * 296.69932 * 9 8 7 30 30 H 1.09007 * 109.47057 * 269.99620 * 1 2 3 31 31 H 1.09000 * 109.47877 * 29.99786 * 1 2 3 32 32 H 1.09008 * 109.47208 * 150.00058 * 1 2 3 33 33 H 1.09006 * 109.51822 * 41.71288 * 7 6 2 34 34 H 1.09001 * 109.52190 * 281.52976 * 7 6 2 35 35 H 1.09000 * 109.50779 * 285.73652 * 8 7 6 36 36 H 1.08998 * 109.50565 * 165.59520 * 8 7 6 37 37 H 1.08004 * 125.13172 * 0.04948 * 13 12 10 38 38 H 0.96996 * 119.99670 * 179.97438 * 18 17 15 39 39 H 1.07995 * 120.03375 * 359.95844 * 24 23 14 40 40 H 1.07996 * 119.69863 * 179.97438 * 25 24 23 41 41 H 1.08004 * 119.85442 * 180.02562 * 26 25 24 42 42 H 1.08004 * 120.16110 * 180.02562 * 27 26 25 43 43 H 1.08990 * 109.95792 * 162.25788 * 29 9 8 44 44 H 1.09004 * 109.95723 * 283.54543 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2840 1.0525 0.0000 4 7 3.5189 0.6821 -0.0028 5 6 3.5807 -0.6137 -0.0070 6 7 2.3076 -1.0843 -0.0005 7 6 1.9304 -2.4970 0.0081 8 6 3.1254 -3.3401 -0.4527 9 7 4.3398 -2.8764 0.2352 10 6 5.0104 -3.6858 1.0788 11 8 4.6659 -4.8450 1.2124 12 6 6.1576 -3.1682 1.8372 13 6 7.0821 -2.2649 1.4024 14 7 7.9924 -2.0315 2.3839 15 6 9.0544 -1.1704 2.2788 16 1 9.5071 -0.7600 3.1693 17 6 9.5483 -0.8257 1.0261 18 7 10.3325 0.2196 0.8944 19 14 9.0965 -1.8489 -0.4699 20 1 7.9055 -1.2587 -1.1320 21 1 10.2359 -1.8635 -1.4221 22 1 8.7888 -3.2381 -0.0448 23 6 7.6920 -2.7823 3.5060 24 6 8.2911 -2.9087 4.7540 25 6 7.7486 -3.7583 5.6949 26 6 6.6065 -4.4912 5.4093 27 6 5.9983 -4.3790 4.1768 28 6 6.5358 -3.5250 3.2182 29 6 4.7997 -1.4980 -0.0197 30 1 -0.3633 -0.0001 1.0277 31 1 -0.3635 0.8900 -0.5138 32 1 -0.3634 -0.8900 -0.5139 33 1 1.0911 -2.6539 -0.6695 34 1 1.6446 -2.7915 1.0178 35 1 3.2534 -3.2321 -1.5297 36 1 2.9470 -4.3876 -0.2098 37 1 7.0894 -1.8042 0.4256 38 1 10.6775 0.4599 0.0202 39 1 9.1808 -2.3422 4.9863 40 1 8.2173 -3.8539 6.6631 41 1 6.1916 -5.1527 6.1554 42 1 5.1086 -4.9505 3.9567 43 1 5.4926 -1.1865 0.7617 44 1 5.2861 -1.4422 -0.9936 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072279863.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:06 Heat of formation + Delta-G solvation = 129.838984 kcal Electronic energy + Delta-G solvation = -31253.703175 eV Core-core repulsion = 27173.799160 eV Total energy + Delta-G solvation = -4079.904014 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 351.144 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -43.34102 -40.91566 -39.27386 -36.66868 -36.51432 -34.67017 -33.51830 -32.27363 -31.71679 -30.72684 -29.37902 -28.58337 -28.10428 -26.18881 -25.51795 -24.25805 -22.51223 -21.86792 -21.33045 -20.77039 -20.39345 -18.65578 -17.88184 -17.32633 -17.01858 -16.80588 -16.09780 -15.75783 -15.53001 -15.27492 -14.89804 -14.56969 -14.26393 -14.10398 -13.97033 -13.53848 -13.50015 -13.27084 -13.07147 -12.97364 -12.85874 -12.71480 -12.62608 -12.37939 -12.09186 -11.97756 -11.57240 -11.44264 -11.30011 -10.90243 -10.72357 -10.40704 -10.31788 -10.23645 -10.20798 -9.60331 -9.50888 -9.14425 -8.91631 -8.80576 -7.59927 -7.20061 -7.11796 -4.62838 1.64069 1.72905 2.19564 2.25184 2.62667 2.76565 2.81219 2.89425 2.91757 2.99521 3.60418 3.65574 3.96085 4.06490 4.13467 4.23208 4.44996 4.58319 4.59149 4.71695 4.77743 5.02056 5.15469 5.22094 5.26751 5.30257 5.41974 5.45947 5.48951 5.56002 5.62775 5.70254 5.82108 5.86704 6.03692 6.09217 6.22397 6.27949 6.40620 6.50146 6.66598 6.75994 6.92993 7.10054 7.22177 7.34297 7.38468 7.49159 7.69882 7.91384 8.46444 8.51488 8.71339 8.76155 9.94734 Molecular weight = 351.14amu Principal moments of inertia in cm(-1) A = 0.009529 B = 0.004517 C = 0.003668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2937.767749 B = 6197.967617 C = 7631.264960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.172 3.828 3 N -0.297 5.297 4 N -0.277 5.277 5 C 0.172 3.828 6 N -0.467 5.467 7 C 0.090 3.910 8 C 0.101 3.899 9 N -0.627 5.627 10 C 0.614 3.386 11 O -0.546 6.546 12 C -0.293 4.293 13 C 0.030 3.970 14 N -0.262 5.262 15 C -0.344 4.344 16 H 0.129 0.871 17 C 0.074 3.926 18 N -0.816 5.816 19 Si 0.872 3.128 20 H -0.261 1.261 21 H -0.274 1.274 22 H -0.243 1.243 23 C 0.051 3.949 24 C -0.091 4.091 25 C -0.136 4.136 26 C -0.147 4.147 27 C -0.085 4.085 28 C -0.054 4.054 29 C 0.182 3.818 30 H 0.085 0.915 31 H 0.094 0.906 32 H 0.075 0.925 33 H 0.105 0.895 34 H 0.094 0.906 35 H 0.080 0.920 36 H 0.121 0.879 37 H 0.157 0.843 38 H 0.291 0.709 39 H 0.117 0.883 40 H 0.115 0.885 41 H 0.112 0.888 42 H 0.114 0.886 43 H 0.138 0.862 44 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.542 -5.225 -2.828 15.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.095 4.095 3 N -0.138 5.138 4 N -0.117 5.117 5 C -0.097 4.097 6 N -0.159 5.159 7 C -0.034 4.034 8 C -0.023 4.023 9 N -0.363 5.363 10 C 0.409 3.591 11 O -0.424 6.424 12 C -0.304 4.304 13 C -0.111 4.111 14 N 0.079 4.921 15 C -0.472 4.472 16 H 0.147 0.853 17 C -0.141 4.141 18 N -0.444 5.444 19 Si 0.697 3.303 20 H -0.187 1.187 21 H -0.200 1.200 22 H -0.166 1.166 23 C -0.056 4.056 24 C -0.110 4.110 25 C -0.156 4.156 26 C -0.166 4.166 27 C -0.104 4.104 28 C -0.059 4.059 29 C 0.057 3.943 30 H 0.104 0.896 31 H 0.113 0.887 32 H 0.094 0.906 33 H 0.123 0.877 34 H 0.113 0.887 35 H 0.098 0.902 36 H 0.139 0.861 37 H 0.174 0.826 38 H 0.102 0.898 39 H 0.135 0.865 40 H 0.133 0.867 41 H 0.130 0.870 42 H 0.132 0.868 43 H 0.156 0.844 44 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -13.807 -4.039 -2.853 14.666 hybrid contribution -0.371 -1.409 -0.958 1.744 sum -14.178 -5.448 -3.811 15.660 Atomic orbital electron populations 1.20178 0.83726 1.04303 1.03990 1.24714 0.97041 0.82946 1.04823 1.74498 0.96078 1.23607 1.19584 1.74095 1.12047 1.07477 1.18062 1.24810 0.87038 0.92800 1.05036 1.45912 1.06792 1.08421 1.54823 1.22459 0.99619 0.76867 1.04489 1.21800 0.82919 1.00407 0.97174 1.48096 1.27818 1.13245 1.47127 1.17393 0.81363 0.84144 0.76247 1.90700 1.69412 1.16686 1.65593 1.18986 1.02520 1.12177 0.96709 1.21732 0.92094 1.02009 0.95276 1.40189 1.17530 1.26114 1.08311 1.19649 1.09134 1.21239 0.97163 0.85305 1.25330 0.94888 0.95188 0.98652 1.69614 1.27520 1.20364 1.26911 0.86902 0.78959 0.82814 0.81580 1.18734 1.20042 1.16649 1.18246 0.98763 0.97698 0.90907 1.20043 0.99998 1.00146 0.90859 1.20571 0.97532 0.99001 0.98519 1.20707 0.97473 1.01815 0.96614 1.20321 0.99740 0.97909 0.92433 1.18452 0.95810 0.98944 0.92653 1.20691 0.90507 0.77910 1.05179 0.89641 0.88706 0.90593 0.87729 0.88740 0.90192 0.86059 0.82640 0.89774 0.86480 0.86714 0.87036 0.86817 0.84438 0.88358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.47 10.28 36.01 0.37 -0.10 16 2 C 0.17 2.24 8.06 -155.38 -1.25 0.99 16 3 N -0.30 -5.09 12.23 32.71 0.40 -4.69 16 4 N -0.28 -5.19 12.21 32.69 0.40 -4.79 16 5 C 0.17 2.79 7.86 -155.48 -1.22 1.57 16 6 N -0.47 -6.10 3.11 -110.96 -0.35 -6.45 16 7 C 0.09 0.82 6.92 -4.02 -0.03 0.80 16 8 C 0.10 1.10 6.43 -3.55 -0.02 1.08 16 9 N -0.63 -9.71 2.98 -175.06 -0.52 -10.23 16 10 C 0.61 11.72 7.63 -12.74 -0.10 11.63 16 11 O -0.55 -11.22 16.54 5.22 0.09 -11.13 16 12 C -0.29 -6.23 5.67 -103.24 -0.59 -6.82 16 13 C 0.03 0.67 5.84 -16.43 -0.10 0.57 16 14 N -0.26 -6.14 2.74 -59.49 -0.16 -6.30 16 15 C -0.34 -8.51 10.34 -14.91 -0.15 -8.66 16 16 H 0.13 3.30 8.06 -52.48 -0.42 2.87 16 17 C 0.07 1.80 5.46 -17.48 -0.10 1.70 16 18 N -0.82 -20.41 13.95 55.50 0.77 -19.64 16 19 Si 0.87 18.37 24.62 -169.99 -4.18 14.19 16 20 H -0.26 -5.02 6.71 56.52 0.38 -4.64 16 21 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 22 H -0.24 -5.33 6.58 56.52 0.37 -4.96 16 23 C 0.05 1.14 6.73 -83.84 -0.56 0.58 16 24 C -0.09 -1.79 9.93 -39.42 -0.39 -2.18 16 25 C -0.14 -2.33 10.02 -39.54 -0.40 -2.72 16 26 C -0.15 -2.50 10.03 -39.55 -0.40 -2.90 16 27 C -0.09 -1.65 10.09 -39.36 -0.40 -2.04 16 28 C -0.05 -1.17 6.34 -104.93 -0.67 -1.84 16 29 C 0.18 2.92 5.52 -4.68 -0.03 2.89 16 30 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.08 0.37 7.67 -51.92 -0.40 -0.03 16 33 H 0.10 0.56 7.75 -51.93 -0.40 0.16 16 34 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.12 1.29 7.01 -51.93 -0.36 0.93 16 37 H 0.16 3.21 2.63 -52.48 -0.14 3.07 16 38 H 0.29 6.66 8.31 -40.82 -0.34 6.32 16 39 H 0.12 2.17 8.06 -52.49 -0.42 1.75 16 40 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 41 H 0.11 1.55 8.06 -52.48 -0.42 1.12 16 42 H 0.11 2.09 8.06 -52.48 -0.42 1.67 16 43 H 0.14 2.51 4.53 -51.93 -0.24 2.27 16 44 H 0.10 1.42 8.14 -51.93 -0.42 0.99 16 LS Contribution 360.83 15.07 5.44 5.44 Total: -1.00 -31.44 360.83 -9.09 -40.53 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: -4.95 Total: 8.54 kcal Atomic # 6 Polarization: 0.56 SS G_CDS: -6.02 Total: -5.46 kcal Atomic # 7 Polarization: -52.65 SS G_CDS: 0.54 Total: -52.10 kcal Atomic # 8 Polarization: -11.22 SS G_CDS: 0.09 Total: -11.13 kcal Atomic # 14 Polarization: 18.37 SS G_CDS: -4.18 Total: 14.19 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.44 -9.09 -40.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072279863.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.373 kcal (2) G-P(sol) polarization free energy of solvation -31.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 138.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.534 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds