Wall clock time and date at job start Tue Mar 31 2020 05:19:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.32568 * 121.64698 * 2 1 4 4 S 1.77228 * 105.31905 * 180.19493 * 3 2 1 5 5 C 1.72205 * 94.84714 * 359.76243 * 4 3 2 6 6 O 1.21835 * 127.05709 * 180.02562 * 5 4 3 7 7 N 1.34239 * 105.88690 * 359.97438 * 5 4 3 8 8 C 1.46504 * 121.38046 * 179.97438 * 7 5 4 9 9 C 1.52997 * 109.47064 * 90.02663 * 8 7 5 10 10 C 1.50704 * 109.46971 * 179.97438 * 9 8 7 11 11 O 1.21297 * 119.99886 * 0.02562 * 10 9 8 12 12 N 1.34779 * 120.00092 * 179.97438 * 10 9 8 13 13 C 1.40151 * 120.00099 * 180.02562 * 12 10 9 14 14 C 1.40416 * 125.97476 * 0.02562 * 13 12 10 15 15 C 1.35237 * 107.86796 * 179.97438 * 14 13 12 16 16 N 1.34970 * 107.85941 * 0.26441 * 15 14 13 17 17 C 1.46504 * 125.96940 * 179.73198 * 16 15 14 18 18 C 1.53002 * 109.46664 * 125.00133 * 17 16 15 19 19 C 1.50704 * 109.46903 * 179.97438 * 18 17 16 20 20 H 1.08001 * 119.99719 * 0.02562 * 19 18 17 21 21 C 1.37877 * 119.99606 * 179.97438 * 19 18 17 22 22 N 1.31516 * 120.00656 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 119.99768 * 179.97438 * 21 19 18 24 24 H 1.48507 * 109.46926 * 0.02562 * 23 21 19 25 25 H 1.48495 * 109.47052 * 120.00147 * 23 21 19 26 26 H 1.48499 * 109.47365 * 240.00566 * 23 21 19 27 27 N 1.31213 * 125.97528 * 180.02562 * 13 12 10 28 28 H 1.08993 * 109.47052 * 270.24229 * 1 2 3 29 29 H 1.08998 * 109.46941 * 30.24606 * 1 2 3 30 30 H 1.09008 * 109.46739 * 150.24308 * 1 2 3 31 31 H 1.07997 * 127.33606 * 359.93392 * 3 2 1 32 32 H 1.08999 * 109.47183 * 330.02592 * 8 7 5 33 33 H 1.09004 * 109.46865 * 210.02501 * 8 7 5 34 34 H 1.08999 * 109.47179 * 59.99926 * 9 8 7 35 35 H 1.08996 * 109.47294 * 299.99942 * 9 8 7 36 36 H 0.96994 * 119.99525 * 0.02562 * 12 10 9 37 37 H 1.08000 * 126.06023 * 359.97438 * 14 13 12 38 38 H 1.08002 * 126.06518 * 179.97438 * 15 14 13 39 39 H 1.08998 * 109.46990 * 244.99353 * 17 16 15 40 40 H 1.08992 * 109.47218 * 5.00271 * 17 16 15 41 41 H 1.08996 * 109.47054 * 299.99799 * 18 17 16 42 42 H 1.09002 * 109.47229 * 60.00105 * 18 17 16 43 43 H 0.96992 * 119.99962 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2026 1.1285 0.0000 4 16 3.9034 0.6303 -0.0058 5 6 3.5606 -1.0573 -0.0007 6 8 4.3673 -1.9703 -0.0016 7 7 2.2222 -1.1604 0.0055 8 6 1.5577 -2.4661 0.0107 9 6 1.3323 -2.9179 1.4550 10 6 0.6482 -4.2607 1.4603 11 8 0.3689 -4.8031 0.4119 12 7 0.3477 -4.8593 2.6298 13 6 -0.2880 -6.1083 2.6348 14 6 -0.6668 -6.8456 1.5013 15 6 -1.2476 -7.9906 1.9262 16 7 -1.2445 -7.9803 3.2758 17 6 -1.7834 -9.0289 4.1456 18 6 -0.6962 -9.4953 5.1158 19 6 -1.2506 -10.5734 6.0109 20 1 -2.2758 -10.8942 5.8987 21 6 -0.4488 -11.1510 6.9724 22 7 0.7998 -10.7608 7.1087 23 14 -1.1362 -12.4870 8.0824 24 1 -2.5559 -12.7422 7.7291 25 1 -0.3499 -13.7337 7.9020 26 1 -1.0494 -12.0475 9.4982 27 7 -0.6334 -6.7932 3.6993 28 1 -0.3633 0.0043 1.0276 29 1 -0.3633 0.8878 -0.5176 30 1 -0.3633 -0.8922 -0.5101 31 1 1.8153 2.1367 -0.0010 32 1 2.1839 -3.1945 -0.5044 33 1 0.5976 -2.3871 -0.4993 34 1 0.7061 -2.1894 1.9700 35 1 2.2924 -2.9968 1.9650 36 1 0.5715 -4.4256 3.4681 37 1 -0.5202 -6.5505 0.4728 38 1 -1.6476 -8.7720 1.2971 39 1 -2.6286 -8.6343 4.7095 40 1 -2.1135 -9.8711 3.5376 41 1 0.1491 -9.8897 4.5519 42 1 -0.3660 -8.6529 5.7238 43 1 1.3636 -11.1670 7.7854 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072287833.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:26 Heat of formation + Delta-G solvation = 42.546573 kcal Electronic energy + Delta-G solvation = -26863.830503 eV Core-core repulsion = 22845.177973 eV Total energy + Delta-G solvation = -4018.652530 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 350.120 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.54324 -41.00420 -39.58229 -37.96154 -35.22248 -33.97956 -33.77992 -32.08867 -31.61960 -29.81177 -28.98621 -28.28002 -25.69145 -24.68601 -23.67876 -21.99605 -21.61148 -20.71763 -20.15697 -19.84548 -18.49115 -17.83852 -17.25187 -16.79739 -16.51996 -16.32654 -16.04983 -15.41014 -15.28144 -14.88872 -14.71253 -14.44991 -14.24011 -14.15478 -13.97408 -13.74001 -13.30261 -13.24578 -12.87927 -12.71188 -12.67207 -12.28347 -11.89345 -11.73376 -11.57531 -11.54530 -11.12581 -10.91821 -10.63416 -10.48862 -10.42732 -10.12025 -10.02928 -9.88099 -9.73892 -9.32279 -8.51228 -8.47369 -8.37693 -7.83867 -6.11793 -4.17479 0.55340 0.94578 1.37557 1.72024 1.96585 2.19197 2.50851 2.56526 3.24538 3.31505 3.34637 3.37925 3.43546 3.99002 4.17683 4.25734 4.36253 4.44989 4.56373 4.78997 4.86839 4.93780 5.02280 5.09092 5.14944 5.19100 5.24364 5.33607 5.43695 5.66954 5.88220 5.97448 6.09244 6.13792 6.28902 6.29927 6.49086 6.91448 7.04824 7.20397 7.41331 7.55461 7.64260 7.88763 7.91403 8.17798 8.23864 8.89018 9.47450 10.99293 Molecular weight = 350.12amu Principal moments of inertia in cm(-1) A = 0.022108 B = 0.001641 C = 0.001585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.216302 B =17056.789590 C =17666.166901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.103 3.897 3 C -0.240 4.240 4 S 0.000 6.000 5 C 0.479 3.521 6 O -0.467 6.467 7 N -0.533 5.533 8 C 0.116 3.884 9 C -0.153 4.153 10 C 0.529 3.471 11 O -0.516 6.516 12 N -0.629 5.629 13 C 0.269 3.731 14 C -0.279 4.279 15 C 0.056 3.944 16 N -0.339 5.339 17 C 0.133 3.867 18 C 0.015 3.985 19 C -0.529 4.529 20 H 0.060 0.940 21 C 0.060 3.940 22 N -0.888 5.888 23 Si 0.897 3.103 24 H -0.272 1.272 25 H -0.283 1.283 26 H -0.283 1.283 27 N -0.304 5.304 28 H 0.087 0.913 29 H 0.091 0.909 30 H 0.080 0.920 31 H 0.192 0.808 32 H 0.107 0.893 33 H 0.107 0.893 34 H 0.104 0.896 35 H 0.106 0.894 36 H 0.414 0.586 37 H 0.165 0.835 38 H 0.173 0.827 39 H 0.075 0.925 40 H 0.087 0.913 41 H 0.021 0.979 42 H 0.033 0.967 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.613 26.215 -16.296 30.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.008 4.008 3 C -0.378 4.378 4 S 0.242 5.758 5 C 0.161 3.839 6 O -0.345 6.345 7 N -0.254 5.254 8 C -0.010 4.010 9 C -0.195 4.195 10 C 0.314 3.686 11 O -0.390 6.390 12 N -0.277 5.277 13 C 0.015 3.985 14 C -0.310 4.310 15 C -0.092 4.092 16 N -0.122 5.122 17 C 0.013 3.987 18 C -0.023 4.023 19 C -0.568 4.568 20 H 0.078 0.922 21 C -0.142 4.142 22 N -0.526 5.526 23 Si 0.725 3.275 24 H -0.196 1.196 25 H -0.209 1.209 26 H -0.209 1.209 27 N -0.134 5.134 28 H 0.106 0.894 29 H 0.110 0.890 30 H 0.099 0.901 31 H 0.209 0.791 32 H 0.125 0.875 33 H 0.125 0.875 34 H 0.123 0.877 35 H 0.124 0.876 36 H 0.250 0.750 37 H 0.182 0.818 38 H 0.190 0.810 39 H 0.093 0.907 40 H 0.106 0.894 41 H 0.039 0.961 42 H 0.052 0.948 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.005 25.747 -15.628 30.119 hybrid contribution -1.249 -1.281 0.410 1.835 sum -1.254 24.467 -15.217 28.840 Atomic orbital electron populations 1.20850 0.86479 1.04804 1.04251 1.19487 0.95923 0.84858 1.00514 1.24917 0.93200 1.01354 1.18299 1.85263 1.08461 1.01163 1.80867 1.21657 0.83769 0.95789 0.82734 1.91014 1.48527 1.42338 1.52661 1.46140 1.06390 1.07759 1.65132 1.21639 1.00337 0.82562 0.96421 1.21935 1.03318 0.94901 0.99304 1.20241 0.78680 0.86608 0.83083 1.90674 1.52167 1.65002 1.31198 1.42475 1.58092 1.17226 1.09889 1.19093 0.98671 0.87643 0.93122 1.21609 1.13124 0.96284 1.00012 1.22624 1.01554 0.99713 0.85350 1.48833 1.43740 1.14873 1.04758 1.22319 0.98816 0.84981 0.92542 1.19368 0.92700 0.97013 0.93182 1.21063 0.98055 1.20303 1.17377 0.92215 1.25011 0.94802 0.97078 0.97312 1.69989 1.06342 1.42274 1.34016 0.86456 0.79127 0.81491 0.80441 1.19614 1.20904 1.20880 1.77370 1.19812 0.96194 1.20038 0.89419 0.89015 0.90113 0.79106 0.87454 0.87521 0.87739 0.87578 0.74985 0.81816 0.81021 0.90663 0.89431 0.96074 0.94835 0.92790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.25 9.70 36.01 0.35 0.10 16 2 C 0.10 0.54 6.59 -82.51 -0.54 -0.01 16 3 C -0.24 -1.17 11.25 28.83 0.32 -0.84 16 4 S 0.00 0.00 22.97 -107.50 -2.47 -2.47 16 5 C 0.48 4.99 8.27 53.81 0.45 5.44 16 6 O -0.47 -6.57 17.55 5.07 0.09 -6.48 16 7 N -0.53 -4.10 2.60 -117.28 -0.31 -4.41 16 8 C 0.12 0.88 4.56 -4.04 -0.02 0.86 16 9 C -0.15 -1.12 6.02 -27.88 -0.17 -1.29 16 10 C 0.53 5.97 7.80 -10.98 -0.09 5.88 16 11 O -0.52 -7.25 13.11 5.54 0.07 -7.18 16 12 N -0.63 -8.09 5.45 -11.13 -0.06 -8.15 16 13 C 0.27 4.65 8.11 -154.40 -1.25 3.40 16 14 C -0.28 -4.70 9.61 -39.83 -0.38 -5.08 16 15 C 0.06 0.92 11.44 -17.24 -0.20 0.72 16 16 N -0.34 -6.57 3.68 -61.38 -0.23 -6.80 16 17 C 0.13 2.65 6.45 -4.04 -0.03 2.63 16 18 C 0.02 0.39 5.15 -27.88 -0.14 0.24 16 19 C -0.53 -14.43 9.11 -34.44 -0.31 -14.75 16 20 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 21 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 22 N -0.89 -26.54 13.29 55.43 0.74 -25.80 16 23 Si 0.90 21.12 29.54 -169.99 -5.02 16.09 16 24 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 25 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 26 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 27 N -0.30 -6.10 12.43 31.44 0.39 -5.71 16 28 H 0.09 0.14 8.14 -51.93 -0.42 -0.29 16 29 H 0.09 0.07 8.10 -51.93 -0.42 -0.35 16 30 H 0.08 0.21 6.18 -51.92 -0.32 -0.11 16 31 H 0.19 0.38 8.06 -52.49 -0.42 -0.05 16 32 H 0.11 1.04 7.76 -51.93 -0.40 0.64 16 33 H 0.11 0.65 6.07 -51.93 -0.32 0.33 16 34 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.41 4.26 8.82 -40.82 -0.36 3.89 16 37 H 0.16 2.66 5.91 -52.49 -0.31 2.34 16 38 H 0.17 2.14 8.06 -52.49 -0.42 1.72 16 39 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 40 H 0.09 1.54 8.07 -51.93 -0.42 1.12 16 41 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.03 0.95 8.14 -51.93 -0.42 0.52 16 43 H 0.26 7.36 8.31 -40.82 -0.34 7.03 16 LS Contribution 383.38 15.07 5.78 5.78 Total: -1.00 -36.23 383.38 -8.60 -44.83 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: -5.47 Total: 1.37 kcal Atomic # 6 Polarization: 1.03 SS G_CDS: -2.11 Total: -1.08 kcal Atomic # 7 Polarization: -51.40 SS G_CDS: 0.54 Total: -50.87 kcal Atomic # 8 Polarization: -13.82 SS G_CDS: 0.16 Total: -13.66 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 16 Polarization: 0.00 SS G_CDS: -2.47 Total: -2.47 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -36.23 -8.60 -44.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072287833.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.378 kcal (2) G-P(sol) polarization free energy of solvation -36.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.831 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds