Wall clock time and date at job start Tue Mar 31 2020 06:03:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37966 * 122.65337 * 2 1 4 4 C 1.33612 * 115.06875 * 179.97438 * 3 2 1 5 5 S 1.75866 * 109.75556 * 0.02562 * 4 3 2 6 6 C 1.34788 * 122.64292 * 179.97438 * 2 1 3 7 7 C 1.47844 * 125.27193 * 359.97438 * 6 2 1 8 8 C 1.39628 * 120.10649 * 227.12048 * 7 6 2 9 9 C 1.37986 * 119.99791 * 179.74235 * 8 7 6 10 10 C 1.38244 * 120.22522 * 0.51013 * 9 8 7 11 11 C 1.39003 * 120.21851 * 359.76584 * 10 9 8 12 12 N 1.39690 * 120.00382 * 179.97438 * 11 10 9 13 13 S 1.65600 * 120.00298 * 254.99032 * 12 11 10 14 14 O 1.42096 * 104.27848 * 180.67236 * 13 12 11 15 15 O 1.42098 * 104.27396 * 308.52931 * 13 12 11 16 16 C 1.81400 * 104.44959 * 64.59871 * 13 12 11 17 17 C 1.53000 * 109.46996 * 184.52267 * 16 13 12 18 18 C 1.50703 * 109.46952 * 179.97438 * 17 16 13 19 19 H 1.07999 * 119.99827 * 0.02562 * 18 17 16 20 20 C 1.37875 * 119.99904 * 179.97438 * 18 17 16 21 21 N 1.31516 * 119.99775 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99985 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.46927 * 60.00394 * 22 20 18 24 24 H 1.48497 * 109.47151 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47084 * 300.00429 * 22 20 18 26 26 C 1.38661 * 119.99045 * 359.97438 * 11 10 9 27 27 H 1.08998 * 109.47352 * 86.47416 * 1 2 3 28 28 H 1.08994 * 109.47573 * 206.48368 * 1 2 3 29 29 H 1.09007 * 109.46696 * 326.47919 * 1 2 3 30 30 H 1.07999 * 122.46145 * 359.71222 * 3 2 1 31 31 H 1.07990 * 125.12181 * 180.02562 * 4 3 2 32 32 H 1.07992 * 120.00197 * 359.97438 * 8 7 6 33 33 H 1.08007 * 119.88751 * 180.25811 * 9 8 7 34 34 H 1.08003 * 119.89243 * 179.74266 * 10 9 8 35 35 H 0.97002 * 119.99586 * 74.98961 * 12 11 10 36 36 H 1.09001 * 109.46840 * 304.52115 * 16 13 12 37 37 H 1.09005 * 109.46812 * 64.51951 * 16 13 12 38 38 H 1.09001 * 109.46678 * 299.99662 * 17 16 13 39 39 H 1.09001 * 109.47156 * 59.99979 * 17 16 13 40 40 H 0.97001 * 119.99401 * 179.97438 * 21 20 18 41 41 H 1.07998 * 120.11114 * 179.97438 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2514 1.1616 0.0000 4 6 3.5758 0.9852 0.0005 5 16 3.9466 -0.7339 0.0004 6 6 2.2340 -1.1350 0.0005 7 6 1.6782 -2.5049 0.0017 8 6 2.1768 -3.4624 0.8873 9 6 1.6527 -4.7388 0.8901 10 6 0.6411 -5.0777 0.0109 11 6 0.1418 -4.1335 -0.8786 12 7 -0.8800 -4.4809 -1.7654 13 16 -0.5385 -4.7262 -3.3672 14 8 -1.7961 -5.0402 -3.9495 15 8 0.1781 -3.5620 -3.7549 16 6 0.5496 -6.1775 -3.3810 17 6 1.0302 -6.4410 -4.8094 18 6 1.9347 -7.6464 -4.8207 19 1 2.1452 -8.1722 -3.9012 20 6 2.4925 -8.0786 -6.0052 21 7 2.2356 -7.4386 -7.1251 22 14 3.6130 -9.5731 -6.0194 23 1 2.8663 -10.7563 -5.5218 24 1 4.0796 -9.8288 -7.4058 25 1 4.7843 -9.3219 -5.1418 26 6 0.6582 -2.8466 -0.8855 27 1 -0.3634 0.0632 -1.0257 28 1 -0.3634 -0.9197 0.4582 29 1 -0.3633 0.8568 0.5676 30 1 1.7969 2.1413 -0.0046 31 1 4.3083 1.7788 0.0010 32 1 2.9700 -3.2028 1.5726 33 1 2.0369 -5.4768 1.5788 34 1 0.2377 -6.0796 0.0149 35 1 -1.7897 -4.5785 -1.4430 36 1 1.4092 -5.9933 -2.7366 37 1 0.0013 -7.0461 -3.0159 38 1 0.1705 -6.6253 -5.4537 39 1 1.5784 -5.5725 -5.1744 40 1 2.6284 -7.7425 -7.9583 41 1 0.2719 -2.1115 -1.5761 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072287863.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:38 Heat of formation + Delta-G solvation = -25.936571 kcal Electronic energy + Delta-G solvation = -25713.556265 eV Core-core repulsion = 22004.675542 eV Total energy + Delta-G solvation = -3708.880724 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 351.075 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -39.84098 -38.17890 -36.63024 -35.53996 -35.01377 -33.90677 -32.34575 -31.17579 -30.11392 -29.31309 -27.17411 -25.61326 -23.44244 -22.65715 -22.06174 -21.61926 -19.16947 -18.80631 -17.96879 -17.55891 -16.74439 -16.41364 -16.24506 -15.69652 -15.42464 -15.09034 -14.92115 -14.55920 -14.21803 -13.93794 -13.43645 -13.42135 -13.26801 -12.83399 -12.53331 -12.37002 -12.25932 -12.10893 -11.96850 -11.78387 -11.67082 -11.60941 -11.57240 -11.41415 -11.07146 -10.98324 -10.90537 -10.47257 -10.38928 -10.09599 -9.69372 -9.44523 -9.21169 -8.81037 -8.51965 -8.50194 -8.27353 -6.12501 -4.18196 0.44353 0.64382 1.15321 1.24370 1.64275 1.89074 2.54196 3.00658 3.27218 3.32009 3.33768 3.58921 4.16749 4.36997 4.40820 4.64865 4.74190 4.82184 4.91449 5.06872 5.09535 5.22602 5.23443 5.24719 5.35925 5.39029 5.51207 5.63305 5.67359 5.76123 5.82636 5.85184 5.98321 6.18741 6.23362 6.29586 6.34776 6.42387 6.46205 6.69087 7.10268 7.28423 7.35362 7.80118 8.16767 8.84727 9.46446 10.98533 Molecular weight = 351.07amu Principal moments of inertia in cm(-1) A = 0.011694 B = 0.003012 C = 0.002775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2393.863482 B = 9294.026905 C =10089.026658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.094 4.094 3 C -0.129 4.129 4 C -0.217 4.217 5 S 0.120 5.880 6 C -0.144 4.144 7 C -0.015 4.015 8 C -0.101 4.101 9 C -0.110 4.110 10 C -0.111 4.111 11 C 0.134 3.866 12 N -1.075 6.075 13 S 2.583 3.417 14 O -0.963 6.963 15 O -0.955 6.955 16 C -0.585 4.585 17 C 0.029 3.971 18 C -0.520 4.520 19 H 0.061 0.939 20 C 0.058 3.942 21 N -0.890 5.890 22 Si 0.900 3.100 23 H -0.275 1.275 24 H -0.285 1.285 25 H -0.275 1.275 26 C -0.081 4.081 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.140 0.860 31 H 0.164 0.836 32 H 0.126 0.874 33 H 0.132 0.868 34 H 0.133 0.867 35 H 0.420 0.580 36 H 0.121 0.879 37 H 0.122 0.878 38 H 0.032 0.968 39 H 0.035 0.965 40 H 0.266 0.734 41 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.423 13.371 20.254 24.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.106 4.106 3 C -0.159 4.159 4 C -0.353 4.353 5 S 0.388 5.612 6 C -0.261 4.261 7 C -0.018 4.018 8 C -0.121 4.121 9 C -0.128 4.128 10 C -0.132 4.132 11 C 0.039 3.961 12 N -0.827 5.827 13 S 2.682 3.318 14 O -0.954 6.954 15 O -0.945 6.945 16 C -0.719 4.719 17 C -0.010 4.010 18 C -0.560 4.560 19 H 0.079 0.921 20 C -0.144 4.144 21 N -0.528 5.528 22 Si 0.727 3.273 23 H -0.201 1.201 24 H -0.211 1.211 25 H -0.200 1.200 26 C -0.103 4.103 27 H 0.092 0.908 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.158 0.842 31 H 0.182 0.818 32 H 0.144 0.856 33 H 0.150 0.850 34 H 0.151 0.849 35 H 0.257 0.743 36 H 0.139 0.861 37 H 0.140 0.860 38 H 0.050 0.950 39 H 0.054 0.946 40 H 0.075 0.925 41 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -0.192 13.167 19.252 23.324 hybrid contribution -0.623 -0.460 0.339 0.845 sum -0.814 12.707 19.591 23.365 Atomic orbital electron populations 1.20616 0.89693 1.02836 1.02614 1.19058 0.97470 0.91130 1.02982 1.19928 0.92816 0.99189 1.04007 1.25672 0.99790 0.99200 1.10622 1.84325 1.04747 1.00053 1.72058 1.22717 0.96007 0.95615 1.11745 1.17838 0.96545 0.90444 0.96981 1.21326 0.99632 0.92967 0.98177 1.20956 0.96549 0.96206 0.99132 1.21609 0.96754 0.99474 0.95396 1.17143 0.92270 0.92508 0.94129 1.53553 1.15225 1.86238 1.27685 1.06038 0.75908 0.77962 0.71880 1.93562 1.41204 1.86359 1.74240 1.93559 1.75116 1.46062 1.79797 1.30408 1.13966 1.16693 1.10785 1.18964 0.97723 0.99365 0.84921 1.20951 1.28872 1.11998 0.94178 0.92057 1.25063 0.96603 0.97284 0.95488 1.69947 1.43991 1.40110 0.98778 0.86527 0.80842 0.82671 0.77225 1.20067 1.21060 1.20050 1.21687 0.95872 0.95596 0.97173 0.90815 0.91192 0.91509 0.84208 0.81805 0.85576 0.85025 0.84862 0.74333 0.86110 0.85978 0.94974 0.94635 0.92459 0.84292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.92 8.81 36.01 0.32 -0.61 16 2 C -0.09 -1.03 5.81 -105.95 -0.62 -1.65 16 3 C -0.13 -1.24 9.97 -41.30 -0.41 -1.65 16 4 C -0.22 -2.02 11.22 29.11 0.33 -1.69 16 5 S 0.12 1.29 23.26 -107.50 -2.50 -1.21 16 6 C -0.14 -1.73 5.94 -36.88 -0.22 -1.95 16 7 C -0.02 -0.19 5.24 -105.00 -0.55 -0.74 16 8 C -0.10 -1.09 9.73 -39.16 -0.38 -1.47 16 9 C -0.11 -1.09 10.02 -39.67 -0.40 -1.49 16 10 C -0.11 -1.22 9.96 -39.30 -0.39 -1.61 16 11 C 0.13 1.74 5.71 -83.84 -0.48 1.26 16 12 N -1.07 -14.11 5.59 32.38 0.18 -13.92 16 13 S 2.58 46.41 5.43 -107.50 -0.58 45.82 16 14 O -0.96 -19.65 18.08 -57.54 -1.04 -20.69 16 15 O -0.96 -19.93 16.88 -57.54 -0.97 -20.90 16 16 C -0.58 -11.26 5.95 37.16 0.22 -11.04 16 17 C 0.03 0.75 4.98 -27.88 -0.14 0.61 16 18 C -0.52 -14.39 9.11 -34.44 -0.31 -14.70 16 19 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 20 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 21 N -0.89 -26.52 13.29 55.43 0.74 -25.78 16 22 Si 0.90 21.21 29.54 -169.99 -5.02 16.18 16 23 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 24 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 25 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 26 C -0.08 -1.10 7.43 -38.98 -0.29 -1.39 16 27 H 0.07 0.70 8.03 -51.93 -0.42 0.28 16 28 H 0.07 0.66 6.77 -51.93 -0.35 0.31 16 29 H 0.07 0.50 8.14 -51.92 -0.42 0.07 16 30 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 31 H 0.16 1.10 8.06 -52.49 -0.42 0.68 16 32 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 33 H 0.13 0.96 8.06 -52.48 -0.42 0.54 16 34 H 0.13 1.22 8.06 -52.48 -0.42 0.80 16 35 H 0.42 4.32 8.92 -34.47 -0.31 4.02 16 36 H 0.12 2.15 8.14 -51.92 -0.42 1.72 16 37 H 0.12 2.08 8.14 -51.92 -0.42 1.66 16 38 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 41 H 0.14 2.00 7.03 -52.49 -0.37 1.63 16 LS Contribution 376.54 15.07 5.67 5.67 Total: -1.00 -35.07 376.54 -12.16 -47.23 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -5.21 Total: 4.18 kcal Atomic # 6 Polarization: -33.16 SS G_CDS: -3.42 Total: -36.58 kcal Atomic # 7 Polarization: -40.62 SS G_CDS: 0.92 Total: -39.71 kcal Atomic # 8 Polarization: -39.58 SS G_CDS: -2.01 Total: -41.59 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: 47.69 SS G_CDS: -3.08 Total: 44.61 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -35.07 -12.16 -47.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072287863.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.291 kcal (2) G-P(sol) polarization free energy of solvation -35.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds