Wall clock time and date at job start Tue Mar 31 2020 06:46:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.53002 * 109.46973 * 186.05536 * 3 2 1 5 5 N 1.46503 * 109.46890 * 179.97438 * 4 3 2 6 6 C 1.46496 * 119.99707 * 90.00468 * 5 4 3 7 7 C 1.50698 * 109.47517 * 89.99717 * 6 5 4 8 8 H 1.08005 * 119.99936 * 0.02562 * 7 6 5 9 9 C 1.37884 * 120.00260 * 179.97438 * 7 6 5 10 10 N 1.31511 * 120.00024 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 119.99821 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.47291 * 359.97438 * 11 9 7 13 13 H 1.48491 * 109.47241 * 120.00248 * 11 9 7 14 14 H 1.48503 * 109.46561 * 240.00126 * 11 9 7 15 15 C 1.34780 * 120.00069 * 269.99866 * 5 4 3 16 16 O 1.21280 * 119.99386 * 180.02562 * 15 5 4 17 17 C 1.50692 * 120.00017 * 0.02562 * 15 5 4 18 18 N 1.46899 * 109.46876 * 174.56244 * 17 15 5 19 19 C 1.46418 * 111.00240 * 298.48128 * 18 17 15 20 20 C 1.53335 * 109.72200 * 198.05524 * 19 18 17 21 21 S 1.81860 * 108.44013 * 297.87063 * 20 19 18 22 22 C 1.81966 * 101.98082 * 51.36453 * 21 20 19 23 23 H 1.08999 * 109.71000 * 68.59431 * 22 21 20 24 24 C 1.53016 * 108.95477 * 189.57882 * 22 21 20 25 25 C 1.52945 * 109.65147 * 178.38272 * 24 22 21 26 26 C 1.53021 * 109.33146 * 299.80635 * 25 24 22 27 27 C 1.52941 * 109.32947 * 60.25079 * 26 25 24 28 28 C 1.46609 * 111.00238 * 64.57124 * 18 17 15 29 29 H 1.08996 * 109.46136 * 282.27995 * 28 18 17 30 30 H 1.09002 * 109.47415 * 306.05350 * 3 2 1 31 31 H 1.08996 * 109.47619 * 66.05932 * 3 2 1 32 32 H 1.08992 * 109.47331 * 299.99829 * 4 3 2 33 33 H 1.09008 * 109.46996 * 60.00373 * 4 3 2 34 34 H 1.09004 * 109.47396 * 209.99398 * 6 5 4 35 35 H 1.09000 * 109.47322 * 329.99684 * 6 5 4 36 36 H 0.96991 * 120.00060 * 179.97438 * 10 9 7 37 37 H 1.09000 * 109.47379 * 294.56323 * 17 15 5 38 38 H 1.08996 * 109.47177 * 54.56365 * 17 15 5 39 39 H 1.08998 * 109.42430 * 318.12138 * 19 18 17 40 40 H 1.09005 * 109.42363 * 77.95418 * 19 18 17 41 41 H 1.09005 * 109.63188 * 178.18722 * 20 19 18 42 42 H 1.08999 * 109.82260 * 57.66536 * 20 19 18 43 43 H 1.09004 * 109.44101 * 298.43828 * 24 22 21 44 44 H 1.09000 * 109.44715 * 58.32846 * 24 22 21 45 45 H 1.09010 * 109.49148 * 59.76214 * 25 24 22 46 46 H 1.09001 * 109.49691 * 179.81158 * 25 24 22 47 47 H 1.09006 * 109.49239 * 180.19901 * 26 25 24 48 48 H 1.09002 * 109.49634 * 300.25012 * 26 25 24 49 49 H 1.08999 * 109.42171 * 179.71110 * 27 26 25 50 50 H 1.09004 * 109.46341 * 59.82267 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1173 1.4354 0.1522 5 7 4.5823 1.4359 0.1528 6 6 5.3152 1.5700 -1.1086 7 6 5.5659 3.0288 -1.3914 8 1 5.2148 3.7809 -0.7004 9 6 6.2445 3.4033 -2.5318 10 7 6.6725 2.4875 -3.3730 11 14 6.5557 5.2116 -2.8820 12 1 5.9769 6.0342 -1.7895 13 1 8.0182 5.4553 -2.9640 14 1 5.9189 5.5828 -4.1711 15 6 5.2558 1.3133 1.3138 16 8 6.4686 1.3142 1.3142 17 6 4.5019 1.1750 2.6112 18 7 5.4508 0.9277 3.7049 19 6 6.1870 -0.3195 3.4891 20 6 6.8161 -0.7839 4.8081 21 16 7.9993 0.4827 5.3585 22 6 6.9931 1.9971 5.2849 23 1 6.2233 1.9647 6.0558 24 6 7.9038 3.2094 5.4904 25 6 7.0800 4.4942 5.3914 26 6 6.4339 4.5762 4.0067 27 6 5.5180 3.3683 3.8031 28 6 6.3368 2.0790 3.9023 29 1 7.1090 2.0791 3.1331 30 1 2.9717 -0.6040 0.8308 31 1 2.9716 -0.4162 -0.9392 32 1 2.7538 2.0400 -0.6786 33 1 2.7538 1.8523 1.0915 34 1 6.2679 1.0457 -1.0328 35 1 4.7267 1.1388 -1.9184 36 1 7.1494 2.7509 -4.1754 37 1 3.9494 2.0933 2.8101 38 1 3.8049 0.3401 2.5392 39 1 5.5030 -1.0856 3.1242 40 1 6.9719 -0.1540 2.7510 41 1 7.3367 -1.7289 4.6528 42 1 6.0400 -0.9129 5.5625 43 1 8.3685 3.1514 6.4747 44 1 8.6786 3.2153 4.7238 45 1 6.3027 4.4877 6.1557 46 1 7.7304 5.3559 5.5415 47 1 5.8488 5.4929 3.9320 48 1 7.2108 4.5773 3.2422 49 1 5.0530 3.4279 2.8191 50 1 4.7436 3.3663 4.5702 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075108151.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:13 Heat of formation + Delta-G solvation = -7.503243 kcal Electronic energy + Delta-G solvation = -30662.237171 eV Core-core repulsion = 26815.361846 eV Total energy + Delta-G solvation = -3846.875326 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 351.172 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.40795 -38.48375 -36.96281 -36.07764 -35.13632 -32.97579 -31.73666 -30.92083 -30.63381 -29.77049 -27.69384 -25.77554 -24.08851 -23.12125 -22.97426 -22.40030 -20.76262 -19.87983 -18.58326 -17.65848 -17.03792 -16.67601 -16.44977 -15.90790 -15.68930 -15.11675 -14.84930 -14.76157 -14.52388 -14.46115 -14.29302 -13.95385 -13.75536 -13.31827 -13.23680 -12.99777 -12.61915 -12.50532 -12.39004 -12.28106 -12.23140 -12.08984 -11.88972 -11.81710 -11.39658 -11.33636 -11.26195 -11.10011 -11.03258 -10.86075 -10.70711 -10.65533 -10.38536 -10.25838 -10.12838 -9.82479 -9.70314 -9.47979 -8.53473 -8.02892 -7.91963 -7.58113 -6.14842 -4.19557 1.81209 2.57840 2.67229 2.76266 3.14323 3.23319 3.32036 3.34362 3.56559 3.73345 4.13263 4.36219 4.58805 4.74271 4.83585 4.86810 4.93549 5.01752 5.05422 5.09640 5.13911 5.18667 5.21142 5.28196 5.33311 5.36695 5.39567 5.49461 5.51550 5.53371 5.67529 5.73352 5.74817 5.80461 5.99023 6.03628 6.05493 6.11070 6.14383 6.19472 6.25262 6.46965 6.77434 6.93539 7.06164 7.28448 7.35145 7.52424 7.80743 8.10618 8.16229 8.74363 8.89169 9.46331 10.93360 Molecular weight = 351.17amu Principal moments of inertia in cm(-1) A = 0.007914 B = 0.004265 C = 0.003295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3537.316754 B = 6563.308816 C = 8494.626867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C 0.216 3.784 3 C -0.050 4.050 4 C 0.117 3.883 5 N -0.594 5.594 6 C 0.244 3.756 7 C -0.527 4.527 8 H 0.057 0.943 9 C 0.063 3.937 10 N -0.893 5.893 11 Si 0.895 3.105 12 H -0.273 1.273 13 H -0.283 1.283 14 H -0.284 1.284 15 C 0.476 3.524 16 O -0.527 6.527 17 C 0.028 3.972 18 N -0.526 5.526 19 C 0.044 3.956 20 C -0.070 4.070 21 S -0.282 6.282 22 C -0.027 4.027 23 H 0.090 0.910 24 C -0.101 4.101 25 C -0.112 4.112 26 C -0.120 4.120 27 C -0.114 4.114 28 C 0.080 3.920 29 H 0.092 0.908 30 H 0.105 0.895 31 H 0.117 0.883 32 H 0.095 0.905 33 H 0.075 0.925 34 H 0.045 0.955 35 H 0.033 0.967 36 H 0.263 0.737 37 H 0.108 0.892 38 H 0.097 0.903 39 H 0.077 0.923 40 H 0.080 0.920 41 H 0.103 0.897 42 H 0.085 0.915 43 H 0.069 0.931 44 H 0.074 0.926 45 H 0.062 0.938 46 H 0.066 0.934 47 H 0.065 0.935 48 H 0.068 0.932 49 H 0.069 0.931 50 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.056 -2.864 16.237 16.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.121 5.121 2 C -0.102 4.102 3 C -0.091 4.091 4 C -0.010 4.010 5 N -0.326 5.326 6 C 0.125 3.875 7 C -0.566 4.566 8 H 0.076 0.924 9 C -0.139 4.139 10 N -0.531 5.531 11 Si 0.723 3.277 12 H -0.198 1.198 13 H -0.209 1.209 14 H -0.210 1.210 15 C 0.261 3.739 16 O -0.405 6.405 17 C -0.103 4.103 18 N -0.249 5.249 19 C -0.085 4.085 20 C -0.219 4.219 21 S -0.053 6.053 22 C -0.156 4.156 23 H 0.108 0.892 24 C -0.140 4.140 25 C -0.151 4.151 26 C -0.158 4.158 27 C -0.153 4.153 28 C -0.029 4.029 29 H 0.110 0.890 30 H 0.123 0.877 31 H 0.135 0.865 32 H 0.113 0.887 33 H 0.093 0.907 34 H 0.063 0.937 35 H 0.051 0.949 36 H 0.073 0.927 37 H 0.126 0.874 38 H 0.115 0.885 39 H 0.096 0.904 40 H 0.098 0.902 41 H 0.121 0.879 42 H 0.104 0.896 43 H 0.087 0.913 44 H 0.092 0.908 45 H 0.081 0.919 46 H 0.085 0.915 47 H 0.084 0.916 48 H 0.087 0.913 49 H 0.088 0.912 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.141 -3.146 16.808 17.386 hybrid contribution -0.273 1.069 -1.486 1.850 sum -3.414 -2.078 15.322 15.835 Atomic orbital electron populations 1.81215 1.13028 1.08555 1.09274 1.29074 0.95074 0.93171 0.92873 1.19883 0.81427 1.01415 1.06393 1.21314 0.82262 0.93417 1.03996 1.48351 1.04812 1.70278 1.09184 1.19340 0.92536 0.97427 0.78177 1.21404 1.36668 0.92061 1.06427 0.92432 1.24908 0.95290 0.97704 0.96001 1.69919 1.38207 1.32820 1.12202 0.86491 0.78147 0.85001 0.78095 1.19788 1.20868 1.20964 1.21594 0.88775 0.77599 0.85919 1.90649 1.13704 1.49835 1.86261 1.22496 0.95813 1.04274 0.87761 1.61651 1.19799 1.03094 1.40334 1.22383 0.98872 0.91300 0.95993 1.23451 0.99647 0.98664 1.00116 1.86841 1.24456 1.05185 1.88833 1.23267 0.98420 0.93630 1.00252 0.89157 1.21375 0.97690 0.92283 1.02624 1.21521 0.99209 0.96747 0.97606 1.21525 0.99385 0.97682 0.97187 1.21741 0.98124 0.93358 1.02111 1.22047 0.95717 0.89390 0.95760 0.88975 0.87679 0.86512 0.88695 0.90660 0.93679 0.94889 0.92698 0.87445 0.88536 0.90435 0.90207 0.87885 0.89604 0.91265 0.90753 0.91898 0.91532 0.91633 0.91283 0.91210 0.91550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -6.26 18.54 42.15 0.78 -5.48 16 2 C 0.22 2.46 15.43 -20.76 -0.32 2.14 16 3 C -0.05 -0.48 5.98 -29.52 -0.18 -0.65 16 4 C 0.12 1.42 5.09 -4.04 -0.02 1.40 16 5 N -0.59 -10.00 2.46 -175.06 -0.43 -10.43 16 6 C 0.24 5.52 5.16 -5.20 -0.03 5.49 16 7 C -0.53 -13.54 9.39 -34.44 -0.32 -13.87 16 8 H 0.06 1.49 7.81 -52.48 -0.41 1.08 16 9 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 10 N -0.89 -25.01 13.29 55.43 0.74 -24.28 16 11 Si 0.89 20.81 29.54 -169.99 -5.02 15.79 16 12 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 13 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 14 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 15 C 0.48 7.86 6.49 -10.99 -0.07 7.79 16 16 O -0.53 -10.96 11.62 5.56 0.06 -10.89 16 17 C 0.03 0.33 3.71 -4.98 -0.02 0.32 16 18 N -0.53 -6.61 4.49 -228.32 -1.02 -7.63 16 19 C 0.04 0.55 4.74 -3.91 -0.02 0.53 16 20 C -0.07 -0.79 6.69 37.33 0.25 -0.54 16 21 S -0.28 -3.72 21.72 -107.50 -2.34 -6.06 16 22 C -0.03 -0.32 2.67 -26.59 -0.07 -0.39 16 23 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 24 C -0.10 -1.12 5.16 -26.75 -0.14 -1.26 16 25 C -0.11 -1.10 5.93 -26.75 -0.16 -1.26 16 26 C -0.12 -1.40 5.93 -26.75 -0.16 -1.56 16 27 C -0.11 -1.41 4.24 -26.73 -0.11 -1.52 16 28 C 0.08 1.08 1.17 -67.71 -0.08 1.01 16 29 H 0.09 1.63 5.94 -51.93 -0.31 1.32 16 30 H 0.11 0.79 7.13 -51.93 -0.37 0.42 16 31 H 0.12 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.09 1.27 8.07 -51.93 -0.42 0.85 16 33 H 0.08 0.75 6.59 -51.92 -0.34 0.41 16 34 H 0.05 1.18 7.42 -51.93 -0.39 0.80 16 35 H 0.03 0.75 8.07 -51.93 -0.42 0.33 16 36 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 37 H 0.11 1.19 5.43 -51.93 -0.28 0.91 16 38 H 0.10 0.91 6.79 -51.93 -0.35 0.56 16 39 H 0.08 0.85 7.88 -51.93 -0.41 0.44 16 40 H 0.08 1.29 6.06 -51.93 -0.31 0.98 16 41 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 44 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 45 H 0.06 0.56 8.14 -51.92 -0.42 0.14 16 46 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 48 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 49 H 0.07 0.97 5.77 -51.93 -0.30 0.67 16 50 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 LS Contribution 397.03 15.07 5.98 5.98 Total: -1.00 -31.03 397.03 -10.88 -41.91 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -8.10 Total: 1.87 kcal Atomic # 6 Polarization: 0.77 SS G_CDS: -1.54 Total: -0.77 kcal Atomic # 7 Polarization: -47.89 SS G_CDS: 0.06 Total: -47.83 kcal Atomic # 8 Polarization: -10.96 SS G_CDS: 0.06 Total: -10.89 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Atomic # 16 Polarization: -3.72 SS G_CDS: -2.34 Total: -6.06 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -31.03 -10.88 -41.91 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075108151.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.409 kcal (2) G-P(sol) polarization free energy of solvation -31.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds