Wall clock time and date at job start Tue Mar 31 2020 05:11:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 119.99652 * 2 1 4 4 H 1.48504 * 109.46785 * 269.99596 * 3 2 1 5 5 H 1.48493 * 109.47622 * 29.99715 * 3 2 1 6 6 H 1.48501 * 109.46988 * 150.00051 * 3 2 1 7 7 C 1.37872 * 120.00261 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99735 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00073 * 180.02562 * 7 2 1 10 10 N 1.46506 * 109.47367 * 179.97438 * 9 7 2 11 11 C 1.34774 * 120.00262 * 256.07231 * 10 9 7 12 12 O 1.21524 * 120.00070 * 182.93100 * 11 10 9 13 13 C 1.48110 * 119.99556 * 2.92510 * 11 10 9 14 14 C 1.39830 * 120.92531 * 26.37119 * 13 11 10 15 15 C 1.38145 * 119.00099 * 179.72986 * 14 13 11 16 16 N 1.31824 * 120.89660 * 0.54830 * 15 14 13 17 17 C 1.31819 * 122.04917 * 359.71652 * 16 15 14 18 18 C 1.38143 * 120.89901 * 0.02562 * 17 16 15 19 19 C 1.39833 * 119.99735 * 76.06301 * 10 9 7 20 20 C 1.38921 * 120.07762 * 351.77752 * 19 10 9 21 21 C 1.38079 * 119.92968 * 180.24898 * 20 19 10 22 22 C 1.38316 * 120.07426 * 0.04746 * 21 20 19 23 23 C 1.38266 * 120.14102 * 359.95277 * 22 21 20 24 24 C 1.50700 * 119.95795 * 180.02562 * 23 22 21 25 25 F 1.39908 * 109.47072 * 270.02087 * 24 23 22 26 26 F 1.39897 * 109.47431 * 30.02245 * 24 23 22 27 27 F 1.39900 * 109.46918 * 150.02448 * 24 23 22 28 28 C 1.38119 * 120.07680 * 0.02562 * 23 22 21 29 29 H 0.97004 * 120.00722 * 0.02562 * 1 2 3 30 30 H 1.08995 * 109.47660 * 59.99568 * 9 7 2 31 31 H 1.08998 * 109.47176 * 299.99414 * 9 7 2 32 32 H 1.08004 * 120.50515 * 359.96666 * 14 13 11 33 33 H 1.08001 * 119.55354 * 180.27152 * 15 14 13 34 34 H 1.08001 * 119.55017 * 179.97438 * 17 16 15 35 35 H 1.07996 * 120.49656 * 179.97438 * 18 17 16 36 36 H 1.07997 * 120.03360 * 0.25437 * 20 19 10 37 37 H 1.08000 * 119.96674 * 180.02562 * 21 20 19 38 38 H 1.08000 * 119.92494 * 179.97438 * 22 21 20 39 39 H 1.07997 * 120.04076 * 180.02562 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1939 0.0011 10 7 3.9999 -2.5752 0.0022 11 6 4.4890 -3.1161 1.1356 12 8 4.9432 -4.2432 1.1242 13 6 4.4731 -2.3367 2.3950 14 6 3.5261 -1.3295 2.6048 15 6 3.5441 -0.6311 3.7966 16 7 4.4435 -0.8962 4.7230 17 6 5.3567 -1.8334 4.5635 18 6 5.4084 -2.5837 3.4048 19 6 3.9585 -3.3323 -1.1726 20 6 3.3021 -2.8416 -2.2944 21 6 3.2586 -3.5940 -3.4513 22 6 3.8669 -4.8356 -3.4939 23 6 4.5209 -5.3269 -2.3793 24 6 5.1827 -6.6798 -2.4305 25 9 4.2670 -7.6620 -2.0377 26 9 5.6135 -6.9392 -3.7359 27 9 6.2819 -6.6943 -1.5651 28 6 4.5685 -4.5791 -1.2190 29 1 -0.4851 0.8400 -0.0004 30 1 3.8745 -0.6799 0.8910 31 1 3.8751 -0.6804 -0.8889 32 1 2.7894 -1.1035 1.8481 33 1 2.8140 0.1457 3.9698 34 1 6.0748 -2.0166 5.3491 35 1 6.1596 -3.3496 3.2808 36 1 2.8264 -1.8726 -2.2616 37 1 2.7489 -3.2130 -4.3238 38 1 3.8310 -5.4222 -4.4000 39 1 5.0799 -4.9632 -0.3488 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075138485.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:31 Heat of formation + Delta-G solvation = -79.330406 kcal Electronic energy + Delta-G solvation = -30919.477010 eV Core-core repulsion = 26185.946055 eV Total energy + Delta-G solvation = -4733.530955 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 350.098 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.98426 -47.51061 -47.43444 -41.03696 -39.55543 -38.10964 -36.04204 -33.17095 -32.60314 -31.55316 -31.09669 -29.83955 -28.45295 -25.78223 -24.77598 -23.41210 -23.05874 -22.47230 -21.36907 -20.02610 -18.31594 -18.27079 -17.94393 -17.47398 -17.16272 -16.74136 -16.10235 -15.78885 -15.61373 -15.02605 -14.98084 -14.54598 -14.35836 -14.24814 -13.97258 -13.87688 -13.80054 -13.63583 -13.61528 -13.50061 -13.46901 -13.20847 -12.78206 -12.69370 -12.42518 -12.12566 -11.90232 -11.48645 -11.17965 -11.08273 -10.87354 -10.60766 -10.08472 -9.75946 -9.63076 -9.55308 -9.12470 -9.01499 -8.88199 -8.77972 -7.62815 -6.58668 -4.66512 0.86795 1.28254 1.33459 1.58870 2.82743 2.93882 2.98668 3.01783 3.05055 3.15976 3.87682 3.91852 3.93679 4.05657 4.24100 4.55980 4.61454 4.63468 4.68744 5.02674 5.16405 5.22670 5.27924 5.38052 5.53697 5.60878 5.66821 5.84053 5.88320 6.00019 6.11076 6.18115 6.26809 6.41188 6.43993 6.57262 6.59613 6.75619 6.88754 6.95807 7.30936 7.52922 7.96769 8.10003 8.25826 8.49324 8.94069 10.51209 Molecular weight = 350.10amu Principal moments of inertia in cm(-1) A = 0.010753 B = 0.004275 C = 0.003238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2603.313974 B = 6547.660520 C = 8645.334436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.089 3.911 3 Si 0.859 3.141 4 H -0.267 1.267 5 H -0.275 1.275 6 H -0.259 1.259 7 C -0.558 4.558 8 H 0.089 0.911 9 C 0.175 3.825 10 N -0.519 5.519 11 C 0.562 3.438 12 O -0.526 6.526 13 C -0.094 4.094 14 C -0.146 4.146 15 C 0.083 3.917 16 N -0.472 5.472 17 C 0.076 3.924 18 C -0.119 4.119 19 C 0.165 3.835 20 C -0.102 4.102 21 C -0.105 4.105 22 C -0.105 4.105 23 C -0.174 4.174 24 C 0.512 3.488 25 F -0.179 7.179 26 F -0.182 7.182 27 F -0.177 7.177 28 C -0.129 4.129 29 H 0.274 0.726 30 H 0.067 0.933 31 H 0.038 0.962 32 H 0.204 0.796 33 H 0.160 0.840 34 H 0.157 0.843 35 H 0.141 0.859 36 H 0.155 0.845 37 H 0.133 0.867 38 H 0.127 0.873 39 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.499 -3.937 -2.018 9.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.119 4.119 3 Si 0.684 3.316 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.183 1.183 7 C -0.596 4.596 8 H 0.107 0.893 9 C 0.055 3.945 10 N -0.237 5.237 11 C 0.353 3.647 12 O -0.406 6.406 13 C -0.105 4.105 14 C -0.165 4.165 15 C -0.073 4.073 16 N -0.182 5.182 17 C -0.081 4.081 18 C -0.139 4.139 19 C 0.069 3.931 20 C -0.122 4.122 21 C -0.124 4.124 22 C -0.125 4.125 23 C -0.176 4.176 24 C 0.457 3.543 25 F -0.161 7.161 26 F -0.164 7.164 27 F -0.158 7.158 28 C -0.149 4.149 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.056 0.944 32 H 0.220 0.780 33 H 0.178 0.822 34 H 0.174 0.826 35 H 0.159 0.841 36 H 0.173 0.827 37 H 0.151 0.849 38 H 0.145 0.855 39 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 8.549 -3.886 -1.181 9.465 hybrid contribution 0.246 0.258 -0.911 0.978 sum 8.795 -3.628 -2.092 9.741 Atomic orbital electron populations 1.69857 1.06208 1.28058 1.45844 1.24864 0.94781 0.98823 0.93446 0.87093 0.80786 0.83931 0.79803 1.19223 1.20012 1.18329 1.21177 0.88019 0.95838 1.54519 0.89338 1.20868 0.96883 0.76800 0.99900 1.45462 1.56284 1.15219 1.06691 1.18414 0.77305 0.85670 0.83334 1.90371 1.46855 1.18838 1.84521 1.20142 0.98021 0.97616 0.94673 1.24370 0.99266 0.92453 1.00429 1.22847 0.96253 0.99045 0.89173 1.67490 1.03025 1.15678 1.32005 1.22618 0.96868 0.92329 0.96252 1.22207 0.98588 0.99691 0.93463 1.17770 0.97206 0.91328 0.86760 1.21512 0.97136 1.02289 0.91284 1.20907 0.99544 0.93818 0.98096 1.20810 0.97838 0.96762 0.97048 1.19766 1.06195 0.94030 0.97629 1.18309 0.76615 0.86141 0.73192 1.93209 1.66757 1.65282 1.90821 1.93152 1.90357 1.95095 1.37762 1.93187 1.55456 1.96906 1.70254 1.22464 0.99569 0.93452 0.99393 0.91552 0.91633 0.94396 0.77996 0.82246 0.82575 0.84145 0.82735 0.84867 0.85494 0.79397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -21.92 13.96 55.43 0.77 -21.14 16 2 C 0.09 2.05 5.38 -17.82 -0.10 1.95 16 3 Si 0.86 16.99 27.47 -169.99 -4.67 12.32 16 4 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 5 H -0.28 -5.51 7.11 56.52 0.40 -5.11 16 6 H -0.26 -4.82 6.54 56.52 0.37 -4.45 16 7 C -0.56 -12.51 6.36 -34.44 -0.22 -12.73 16 8 H 0.09 2.29 8.06 -52.48 -0.42 1.87 16 9 C 0.18 3.41 3.09 -5.19 -0.02 3.39 16 10 N -0.52 -10.01 2.73 -115.70 -0.32 -10.32 16 11 C 0.56 10.75 7.47 -12.21 -0.09 10.66 16 12 O -0.53 -10.51 13.14 5.35 0.07 -10.44 16 13 C -0.09 -1.64 5.54 -104.65 -0.58 -2.22 16 14 C -0.15 -2.59 7.56 -39.02 -0.30 -2.89 16 15 C 0.08 1.35 11.17 -17.59 -0.20 1.15 16 16 N -0.47 -7.41 10.34 -13.30 -0.14 -7.55 16 17 C 0.08 1.05 11.17 -17.59 -0.20 0.85 16 18 C -0.12 -1.76 9.69 -39.02 -0.38 -2.14 16 19 C 0.16 3.08 6.41 -83.72 -0.54 2.55 16 20 C -0.10 -1.75 8.88 -39.39 -0.35 -2.10 16 21 C -0.11 -1.52 10.04 -39.61 -0.40 -1.92 16 22 C -0.11 -1.51 9.40 -39.54 -0.37 -1.88 16 23 C -0.17 -2.80 5.45 -104.66 -0.57 -3.37 16 24 C 0.51 7.73 3.36 36.01 0.12 7.85 16 25 F -0.18 -2.78 17.30 2.25 0.04 -2.74 16 26 F -0.18 -2.53 16.46 2.25 0.04 -2.49 16 27 F -0.18 -2.77 16.46 2.25 0.04 -2.74 16 28 C -0.13 -2.34 8.38 -39.39 -0.33 -2.67 16 29 H 0.27 6.52 8.31 -40.82 -0.34 6.18 16 30 H 0.07 1.26 3.34 -51.93 -0.17 1.08 16 31 H 0.04 0.71 6.85 -51.93 -0.36 0.36 16 32 H 0.20 3.97 3.25 -52.48 -0.17 3.80 16 33 H 0.16 2.25 8.06 -52.49 -0.42 1.83 16 34 H 0.16 1.59 8.06 -52.49 -0.42 1.16 16 35 H 0.14 1.84 7.95 -52.49 -0.42 1.42 16 36 H 0.16 2.77 5.91 -52.49 -0.31 2.46 16 37 H 0.13 1.55 8.06 -52.49 -0.42 1.12 16 38 H 0.13 1.50 7.60 -52.49 -0.40 1.10 16 39 H 0.19 3.63 4.12 -56.04 -0.23 3.40 16 LS Contribution 337.51 15.07 5.09 5.09 Total: -1.00 -25.69 337.51 -6.50 -32.19 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: -2.91 Total: 11.35 kcal Atomic # 6 Polarization: 0.99 SS G_CDS: -4.50 Total: -3.52 kcal Atomic # 7 Polarization: -39.33 SS G_CDS: 0.32 Total: -39.01 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: 0.07 Total: -10.44 kcal Atomic # 9 Polarization: -8.08 SS G_CDS: 0.11 Total: -7.97 kcal Atomic # 14 Polarization: 16.99 SS G_CDS: -4.67 Total: 12.32 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -25.69 -6.50 -32.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075138485.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.145 kcal (2) G-P(sol) polarization free energy of solvation -25.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds