Wall clock time and date at job start Tue Mar 31 2020 05:11:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86806 * 120.00098 * 2 1 4 4 H 1.48502 * 109.46853 * 270.00379 * 3 2 1 5 5 H 1.48503 * 109.46648 * 29.99579 * 3 2 1 6 6 H 1.48496 * 109.47318 * 149.99805 * 3 2 1 7 7 C 1.37879 * 120.00268 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99916 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99832 * 0.02562 * 7 2 1 10 10 N 1.46496 * 109.47014 * 179.97438 * 9 7 2 11 11 C 1.34777 * 119.99923 * 82.77910 * 10 9 7 12 12 O 1.21532 * 120.00453 * 181.82888 * 11 10 9 13 13 C 1.48131 * 120.00133 * 1.83571 * 11 10 9 14 14 C 1.39325 * 119.72764 * 173.78890 * 13 11 10 15 15 C 1.38582 * 119.05855 * 179.68410 * 14 13 11 16 16 C 1.38628 * 118.49066 * 0.55793 * 15 14 13 17 17 C 1.38552 * 119.35375 * 359.46038 * 16 15 14 18 18 N 1.31528 * 120.90623 * 0.25752 * 17 16 15 19 19 C 1.39829 * 120.00182 * 262.77780 * 10 9 7 20 20 C 1.38916 * 120.07146 * 351.15239 * 19 10 9 21 21 C 1.38084 * 119.92420 * 179.76804 * 20 19 10 22 22 C 1.38306 * 120.07511 * 0.50460 * 21 20 19 23 23 C 1.38263 * 120.14375 * 359.74892 * 22 21 20 24 24 C 1.50698 * 119.96331 * 179.97438 * 23 22 21 25 25 F 1.39902 * 109.47612 * 270.02198 * 24 23 22 26 26 F 1.39900 * 109.47161 * 30.02226 * 24 23 22 27 27 F 1.39901 * 109.47318 * 150.01759 * 24 23 22 28 28 C 1.38128 * 120.07468 * 359.97438 * 23 22 21 29 29 H 0.96998 * 119.99759 * 359.97438 * 1 2 3 30 30 H 1.09006 * 109.47265 * 59.99477 * 9 7 2 31 31 H 1.08999 * 109.46704 * 299.99798 * 9 7 2 32 32 H 1.08006 * 120.47100 * 359.97438 * 14 13 11 33 33 H 1.07999 * 120.75609 * 180.29944 * 15 14 13 34 34 H 1.08003 * 120.32617 * 179.73815 * 16 15 14 35 35 H 1.08003 * 119.54780 * 180.27743 * 17 16 15 36 36 H 1.07997 * 120.03522 * 0.02562 * 20 19 10 37 37 H 1.07998 * 119.96150 * 180.22676 * 21 20 19 38 38 H 1.07999 * 119.92895 * 179.76512 * 22 21 20 39 39 H 1.08005 * 120.03686 * 180.02562 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 7 2.2032 -3.6126 0.0005 11 6 2.7526 -4.0294 1.1585 12 8 3.5674 -4.9311 1.1546 13 6 2.3632 -3.3887 2.4360 14 6 2.8338 -3.9071 3.6406 15 6 2.4662 -3.2927 4.8271 16 6 1.6308 -2.1880 4.7686 17 6 1.2002 -1.7266 3.5352 18 7 1.5691 -2.3252 2.4236 19 6 2.5418 -4.2429 -1.2008 20 6 1.8457 -3.9426 -2.3648 21 6 2.1858 -4.5633 -3.5505 22 6 3.2114 -5.4909 -3.5778 23 6 3.9027 -5.7960 -2.4200 24 6 5.0191 -6.8077 -2.4543 25 9 4.5009 -8.0827 -2.2032 26 9 5.6252 -6.7907 -3.7151 27 9 5.9676 -6.4889 -1.4767 28 6 3.5713 -5.1745 -1.2318 29 1 -0.4850 0.8400 0.0004 30 1 0.6247 -2.5571 -0.8897 31 1 0.6242 -2.5566 0.8903 32 1 3.4799 -4.7726 3.6492 33 1 2.8190 -3.6687 5.7761 34 1 1.3223 -1.6889 5.6754 35 1 0.5529 -0.8634 3.4857 36 1 1.0422 -3.2213 -2.3433 37 1 1.6475 -4.3276 -4.4565 38 1 3.4729 -5.9778 -4.5057 39 1 4.1121 -5.4129 -0.3277 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075138629.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:35 Heat of formation + Delta-G solvation = -78.709373 kcal Electronic energy + Delta-G solvation = -30912.226479 eV Core-core repulsion = 26178.722454 eV Total energy + Delta-G solvation = -4733.504025 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 350.098 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.93757 -47.45908 -47.39232 -40.73879 -39.42095 -37.91566 -35.56235 -32.71173 -32.26260 -31.46183 -31.24511 -29.61276 -27.36037 -25.73482 -24.61760 -23.28446 -23.18122 -22.37597 -21.25640 -19.92708 -18.27469 -18.18985 -17.81724 -16.99705 -16.70294 -16.60302 -15.96219 -15.79051 -15.37031 -14.85932 -14.78111 -14.54251 -14.32109 -14.20482 -13.92498 -13.84015 -13.60542 -13.56795 -13.33849 -13.32120 -13.12896 -12.94325 -12.53529 -12.46246 -12.29768 -11.79679 -11.70679 -11.32544 -11.14959 -10.92892 -10.74943 -10.38372 -10.15197 -9.64366 -9.31713 -9.14495 -8.89575 -8.83059 -8.66100 -8.19877 -7.42109 -6.13914 -4.13368 0.89685 1.33729 1.58621 1.67918 2.89306 3.09978 3.21933 3.29252 3.32650 3.41290 3.93480 3.97912 4.28982 4.30172 4.35949 4.59451 4.68532 4.98686 5.11841 5.18923 5.23289 5.24501 5.32343 5.36796 5.55941 5.65451 5.73406 5.78591 6.05416 6.08019 6.22809 6.34488 6.48518 6.50742 6.63764 6.71915 6.87703 7.03309 7.39700 7.61611 7.75168 7.93949 8.09386 8.27681 8.59697 8.84734 9.46409 10.94273 Molecular weight = 350.10amu Principal moments of inertia in cm(-1) A = 0.010847 B = 0.004111 C = 0.003283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2580.761091 B = 6808.644892 C = 8526.947675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.073 3.927 3 Si 0.887 3.113 4 H -0.281 1.281 5 H -0.285 1.285 6 H -0.276 1.276 7 C -0.499 4.499 8 H 0.052 0.948 9 C 0.219 3.781 10 N -0.515 5.515 11 C 0.571 3.429 12 O -0.539 6.539 13 C 0.075 3.925 14 C -0.118 4.118 15 C -0.098 4.098 16 C -0.156 4.156 17 C 0.093 3.907 18 N -0.377 5.377 19 C 0.170 3.830 20 C -0.116 4.116 21 C -0.101 4.101 22 C -0.112 4.112 23 C -0.170 4.170 24 C 0.511 3.489 25 F -0.181 7.181 26 F -0.182 7.182 27 F -0.176 7.176 28 C -0.131 4.131 29 H 0.262 0.738 30 H 0.037 0.963 31 H 0.092 0.908 32 H 0.141 0.859 33 H 0.134 0.866 34 H 0.132 0.868 35 H 0.159 0.841 36 H 0.147 0.853 37 H 0.132 0.868 38 H 0.126 0.874 39 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.369 -8.164 2.115 8.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.129 4.129 3 Si 0.715 3.285 4 H -0.207 1.207 5 H -0.211 1.211 6 H -0.202 1.202 7 C -0.538 4.538 8 H 0.070 0.930 9 C 0.101 3.899 10 N -0.232 5.232 11 C 0.362 3.638 12 O -0.419 6.419 13 C -0.063 4.063 14 C -0.139 4.139 15 C -0.124 4.124 16 C -0.176 4.176 17 C -0.065 4.065 18 N -0.088 5.088 19 C 0.073 3.927 20 C -0.136 4.136 21 C -0.120 4.120 22 C -0.131 4.131 23 C -0.172 4.172 24 C 0.457 3.543 25 F -0.162 7.162 26 F -0.164 7.164 27 F -0.157 7.157 28 C -0.150 4.150 29 H 0.072 0.928 30 H 0.054 0.946 31 H 0.109 0.891 32 H 0.158 0.842 33 H 0.151 0.849 34 H 0.150 0.850 35 H 0.177 0.823 36 H 0.164 0.836 37 H 0.150 0.850 38 H 0.144 0.856 39 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 2.323 -8.157 1.382 8.593 hybrid contribution 0.938 0.824 0.726 1.444 sum 3.261 -7.332 2.108 8.297 Atomic orbital electron populations 1.69911 1.05668 1.26771 1.50423 1.24697 0.94678 0.98383 0.95188 0.86678 0.79918 0.83667 0.78259 1.20674 1.21102 1.20154 1.21089 0.92794 0.89982 1.49967 0.92967 1.20486 0.87638 0.81169 1.00573 1.46067 1.41681 1.32303 1.03137 1.18139 0.80537 0.81639 0.83519 1.90357 1.34406 1.31207 1.85945 1.20940 0.97938 0.94674 0.92795 1.22021 0.99274 1.00600 0.92002 1.21436 0.97175 0.95641 0.98136 1.22401 0.98208 0.97208 0.99806 1.23096 0.97510 0.98763 0.87180 1.68739 1.06842 1.04129 1.29043 1.17929 0.94301 0.93626 0.86849 1.21376 1.00433 1.00624 0.91174 1.20851 0.97138 0.96262 0.97749 1.20755 0.96641 0.99046 0.96673 1.19790 0.99289 1.01341 0.96818 1.18326 0.82171 0.80574 0.73221 1.93195 1.86763 1.42253 1.93996 1.93153 1.84914 1.96615 1.41692 1.93194 1.66800 1.92645 1.63074 1.22459 0.97135 0.95777 0.99678 0.92827 0.94572 0.89060 0.84155 0.84851 0.85021 0.82339 0.83567 0.84988 0.85578 0.79415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.96 13.29 55.43 0.74 -22.22 16 2 C 0.07 1.83 5.46 -17.82 -0.10 1.74 16 3 Si 0.89 20.20 29.54 -169.99 -5.02 15.17 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.50 -12.53 7.85 -34.44 -0.27 -12.80 16 8 H 0.05 1.40 7.81 -52.49 -0.41 0.99 16 9 C 0.22 5.01 4.53 -5.20 -0.02 4.99 16 10 N -0.52 -10.97 2.70 -115.69 -0.31 -11.28 16 11 C 0.57 11.87 7.53 -12.20 -0.09 11.78 16 12 O -0.54 -11.26 12.76 5.34 0.07 -11.19 16 13 C 0.07 1.42 6.61 -83.01 -0.55 0.87 16 14 C -0.12 -1.82 9.63 -39.05 -0.38 -2.20 16 15 C -0.10 -1.23 10.17 -39.31 -0.40 -1.63 16 16 C -0.16 -2.00 10.11 -39.32 -0.40 -2.40 16 17 C 0.09 1.53 11.18 -17.57 -0.20 1.33 16 18 N -0.38 -7.46 4.93 -9.80 -0.05 -7.51 16 19 C 0.17 3.37 6.48 -83.72 -0.54 2.82 16 20 C -0.12 -2.05 9.30 -39.39 -0.37 -2.41 16 21 C -0.10 -1.49 10.04 -39.61 -0.40 -1.89 16 22 C -0.11 -1.64 9.40 -39.55 -0.37 -2.02 16 23 C -0.17 -2.84 5.45 -104.65 -0.57 -3.41 16 24 C 0.51 7.96 3.36 36.00 0.12 8.08 16 25 F -0.18 -2.78 17.30 2.25 0.04 -2.74 16 26 F -0.18 -2.64 16.46 2.25 0.04 -2.60 16 27 F -0.18 -2.90 16.46 2.25 0.04 -2.87 16 28 C -0.13 -2.49 8.37 -39.39 -0.33 -2.82 16 29 H 0.26 6.52 8.31 -40.82 -0.34 6.18 16 30 H 0.04 0.85 5.63 -51.93 -0.29 0.56 16 31 H 0.09 2.17 5.33 -51.95 -0.28 1.89 16 32 H 0.14 2.00 7.66 -52.48 -0.40 1.60 16 33 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 34 H 0.13 1.24 8.06 -52.48 -0.42 0.82 16 35 H 0.16 2.47 8.06 -52.48 -0.42 2.05 16 36 H 0.15 2.64 5.88 -52.49 -0.31 2.33 16 37 H 0.13 1.53 8.06 -52.49 -0.42 1.10 16 38 H 0.13 1.53 7.60 -52.49 -0.40 1.13 16 39 H 0.19 3.82 4.15 -55.89 -0.23 3.59 16 LS Contribution 344.82 15.07 5.20 5.20 Total: -1.00 -27.75 344.82 -7.27 -35.03 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: -3.15 Total: 4.97 kcal Atomic # 6 Polarization: 4.90 SS G_CDS: -4.86 Total: 0.04 kcal Atomic # 7 Polarization: -41.39 SS G_CDS: 0.38 Total: -41.01 kcal Atomic # 8 Polarization: -11.26 SS G_CDS: 0.07 Total: -11.19 kcal Atomic # 9 Polarization: -8.32 SS G_CDS: 0.11 Total: -8.20 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.17 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -27.75 -7.27 -35.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075138629.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.682 kcal (2) G-P(sol) polarization free energy of solvation -27.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds