Wall clock time and date at job start Tue Mar 31 2020 05:20:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 N 1.39942 * 125.75676 * 2 1 4 4 C 1.30445 * 108.89900 * 179.77475 * 3 2 1 5 5 C 1.41298 * 108.02106 * 0.38738 * 4 3 2 6 6 C 1.47426 * 126.41406 * 179.87882 * 5 4 3 7 7 O 1.21604 * 120.00125 * 126.49985 * 6 5 4 8 8 N 1.34773 * 119.99929 * 306.50422 * 6 5 4 9 9 C 1.46499 * 120.00204 * 354.22946 * 8 6 5 10 10 C 1.50702 * 109.47222 * 275.47728 * 9 8 6 11 11 H 1.07995 * 119.99845 * 0.02562 * 10 9 8 12 12 C 1.37878 * 119.99920 * 179.97438 * 10 9 8 13 13 N 1.31517 * 120.00008 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 119.99844 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.47274 * 0.02562 * 14 12 10 16 16 H 1.48496 * 109.46905 * 120.00302 * 14 12 10 17 17 H 1.48500 * 109.46946 * 240.00188 * 14 12 10 18 18 C 1.46508 * 119.99950 * 174.23316 * 8 6 5 19 19 C 1.50700 * 109.47013 * 89.99822 * 18 8 6 20 20 C 1.38665 * 120.41978 * 90.00075 * 19 18 8 21 21 C 1.38625 * 118.42518 * 179.97438 * 20 19 18 22 22 C 1.38229 * 119.15659 * 0.25679 * 21 20 19 23 23 N 1.31853 * 120.76242 * 359.49523 * 22 21 20 24 24 C 1.31884 * 121.72885 * 0.48966 * 23 22 21 25 25 C 1.34258 * 125.75582 * 180.02562 * 2 1 3 26 26 C 1.50700 * 126.28804 * 359.95502 * 25 2 1 27 27 F 1.39891 * 109.47317 * 30.02365 * 26 25 2 28 28 F 1.39904 * 109.47422 * 150.02898 * 26 25 2 29 29 H 1.09006 * 109.46811 * 269.97505 * 1 2 3 30 30 H 1.09000 * 109.47242 * 29.97236 * 1 2 3 31 31 H 1.08995 * 109.47724 * 149.97343 * 1 2 3 32 32 H 1.08002 * 125.99232 * 180.25987 * 4 3 2 33 33 H 1.09004 * 109.47039 * 35.48076 * 9 8 6 34 34 H 1.09001 * 109.47287 * 155.47849 * 9 8 6 35 35 H 0.97001 * 119.99869 * 179.97438 * 13 12 10 36 36 H 1.08999 * 109.46629 * 329.99492 * 18 8 6 37 37 H 1.09005 * 109.47056 * 209.99983 * 18 8 6 38 38 H 1.08001 * 120.78799 * 359.95352 * 20 19 18 39 39 H 1.07992 * 120.42684 * 179.97438 * 21 20 19 40 40 H 1.08000 * 119.62189 * 179.74943 * 22 21 20 41 41 H 1.07999 * 119.61919 * 179.75179 * 24 23 22 42 42 H 1.09010 * 109.47212 * 270.02794 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2827 1.1356 0.0000 4 6 3.5311 0.7574 0.0049 5 6 3.5598 -0.6553 -0.0009 6 6 4.7637 -1.5062 -0.0008 7 8 4.8962 -2.3722 0.8426 8 7 5.7176 -1.3242 -0.9353 9 6 5.5026 -0.3691 -2.0252 10 6 4.7323 -1.0378 -3.1345 11 1 4.4325 -2.0707 -3.0372 12 6 4.4094 -0.3305 -4.2731 13 7 4.7741 0.9276 -4.3913 14 14 3.4540 -1.1591 -5.6478 15 1 3.1654 -2.5664 -5.2717 16 1 2.1768 -0.4346 -5.8694 17 1 4.2597 -1.1349 -6.8950 18 6 6.9695 -2.0816 -0.8614 19 6 6.8218 -3.3720 -1.6256 20 6 7.1403 -3.4299 -2.9739 21 6 6.9893 -4.6383 -3.6363 22 6 6.5245 -5.7362 -2.9369 23 7 6.2359 -5.6455 -1.6535 24 6 6.3678 -4.5126 -0.9913 25 6 2.2495 -1.0895 -0.0005 26 6 1.7849 -2.5231 -0.0002 27 9 0.5544 -2.6147 -0.6593 28 9 2.7276 -3.3191 -0.6597 29 1 -0.3633 -0.0004 1.0277 30 1 -0.3634 0.8902 -0.5134 31 1 -0.3634 -0.8897 -0.5142 32 1 4.3919 1.4096 0.0101 33 1 4.9366 0.4851 -1.6533 34 1 6.4658 -0.0289 -2.4055 35 1 4.5473 1.4251 -5.1926 36 1 7.2004 -2.3009 0.1811 37 1 7.7770 -1.4922 -1.2961 38 1 7.4971 -2.5543 -3.4958 39 1 7.2275 -4.7198 -4.6865 40 1 6.4002 -6.6803 -3.4464 41 1 6.1176 -4.4759 0.0586 42 1 1.6730 -2.8686 1.0277 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076019028.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:54 Heat of formation + Delta-G solvation = -6.906377 kcal Electronic energy + Delta-G solvation = -32648.654406 eV Core-core repulsion = 28074.017049 eV Total energy + Delta-G solvation = -4574.637357 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 350.130 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -48.95621 -46.93760 -41.11450 -39.76299 -38.47895 -35.20536 -33.37031 -32.81731 -31.92864 -31.30679 -30.86823 -27.74332 -27.28496 -25.97462 -25.45806 -23.26043 -22.92780 -22.11825 -21.23690 -20.57948 -18.84909 -17.52482 -17.26135 -16.91011 -16.64127 -16.45974 -16.22545 -15.65826 -15.50165 -15.18558 -14.95834 -14.82937 -14.46608 -13.97287 -13.77100 -13.65077 -13.42288 -13.29549 -12.93924 -12.79621 -12.55386 -12.48878 -12.46891 -12.27008 -12.09527 -11.90226 -11.46966 -11.30253 -11.07279 -10.98237 -10.76949 -10.66449 -10.22528 -9.74919 -9.36515 -9.28052 -9.19324 -8.98338 -8.58406 -8.46982 -8.31343 -7.75219 -6.16479 -4.19647 1.57385 1.67629 1.83895 2.45301 2.67475 3.20221 3.29545 3.34989 3.45918 3.65242 4.02307 4.12227 4.34517 4.42709 4.58879 4.82246 4.90945 4.92322 5.15383 5.17815 5.22105 5.31009 5.37973 5.43814 5.48547 5.54013 5.58966 5.72278 5.80207 5.98320 6.04047 6.16379 6.28826 6.62781 6.64831 6.70438 6.84500 6.90827 7.15138 7.21742 7.48280 7.76549 7.80184 8.09340 8.22182 8.45161 8.81242 8.95558 9.46646 10.90746 Molecular weight = 350.13amu Principal moments of inertia in cm(-1) A = 0.008977 B = 0.005833 C = 0.004828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3118.277463 B = 4799.350508 C = 5797.859004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.346 5.346 3 N -0.279 5.279 4 C 0.094 3.906 5 C -0.205 4.205 6 C 0.598 3.402 7 O -0.563 6.563 8 N -0.584 5.584 9 C 0.235 3.765 10 C -0.518 4.518 11 H 0.059 0.941 12 C 0.067 3.933 13 N -0.891 5.891 14 Si 0.884 3.116 15 H -0.272 1.272 16 H -0.285 1.285 17 H -0.282 1.282 18 C 0.166 3.834 19 C -0.142 4.142 20 C -0.037 4.037 21 C -0.182 4.182 22 C 0.088 3.912 23 N -0.496 5.496 24 C 0.119 3.881 25 C 0.040 3.960 26 C 0.346 3.654 27 F -0.200 7.200 28 F -0.168 7.168 29 H 0.076 0.924 30 H 0.093 0.907 31 H 0.102 0.898 32 H 0.194 0.806 33 H 0.044 0.956 34 H 0.036 0.964 35 H 0.262 0.738 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.136 0.864 39 H 0.127 0.873 40 H 0.145 0.855 41 H 0.155 0.845 42 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.899 -3.734 7.484 8.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.127 5.127 3 N -0.099 5.099 4 C -0.092 4.092 5 C -0.220 4.220 6 C 0.385 3.615 7 O -0.444 6.444 8 N -0.313 5.313 9 C 0.115 3.885 10 C -0.557 4.557 11 H 0.078 0.922 12 C -0.135 4.135 13 N -0.530 5.530 14 Si 0.712 3.288 15 H -0.196 1.196 16 H -0.211 1.211 17 H -0.208 1.208 18 C 0.042 3.958 19 C -0.145 4.145 20 C -0.064 4.064 21 C -0.202 4.202 22 C -0.069 4.069 23 N -0.204 5.204 24 C -0.038 4.038 25 C -0.091 4.091 26 C 0.291 3.709 27 F -0.181 7.181 28 F -0.149 7.149 29 H 0.095 0.905 30 H 0.112 0.888 31 H 0.120 0.880 32 H 0.210 0.790 33 H 0.061 0.939 34 H 0.054 0.946 35 H 0.072 0.928 36 H 0.102 0.898 37 H 0.102 0.898 38 H 0.154 0.846 39 H 0.145 0.855 40 H 0.163 0.837 41 H 0.173 0.827 42 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -3.095 -3.750 8.183 9.518 hybrid contribution 0.023 -0.131 -1.982 1.986 sum -3.072 -3.881 6.201 7.934 Atomic orbital electron populations 1.22254 0.73766 1.06087 1.03625 1.47986 1.06732 1.02494 1.55527 1.77144 1.02013 1.06649 1.24115 1.23879 0.95089 0.93195 0.97014 1.19843 0.92111 0.94133 1.15920 1.17134 0.81685 0.81985 0.80686 1.90665 1.78876 1.34667 1.40161 1.48114 1.15345 1.41252 1.26618 1.19604 0.97743 0.87579 0.83554 1.21429 1.35111 0.98251 1.00928 0.92247 1.24836 0.95799 0.94714 0.98179 1.69911 1.46492 1.08288 1.28332 0.86637 0.79963 0.80027 0.82189 1.19628 1.21081 1.20829 1.20153 0.86913 0.89004 0.99721 1.21204 1.00794 0.97034 0.95467 1.21504 0.94101 0.97326 0.93432 1.22037 1.02845 0.94311 1.01012 1.22603 0.95446 0.98274 0.90579 1.67660 1.15593 1.27923 1.09273 1.22730 0.93357 0.87423 1.00284 1.21529 0.91758 0.90091 1.05695 1.19699 0.72728 0.84984 0.93510 1.92900 1.44446 1.96464 1.84318 1.93144 1.64559 1.73917 1.83288 0.90542 0.88815 0.87969 0.78960 0.93865 0.94583 0.92807 0.89807 0.89804 0.84650 0.85498 0.83727 0.82733 0.85095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.97 11.16 59.84 0.67 1.64 16 2 N -0.35 -5.74 3.98 -63.35 -0.25 -5.99 16 3 N -0.28 -5.08 12.50 30.86 0.39 -4.69 16 4 C 0.09 1.72 9.99 -16.98 -0.17 1.55 16 5 C -0.20 -3.98 5.06 -105.07 -0.53 -4.51 16 6 C 0.60 12.07 6.21 -12.52 -0.08 11.99 16 7 O -0.56 -11.71 15.45 5.27 0.08 -11.63 16 8 N -0.58 -11.57 2.45 -177.70 -0.44 -12.00 16 9 C 0.23 5.26 5.01 -5.19 -0.03 5.23 16 10 C -0.52 -13.20 9.33 -34.44 -0.32 -13.52 16 11 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 12 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 13 N -0.89 -24.22 13.29 55.43 0.74 -23.48 16 14 Si 0.88 21.25 29.54 -169.99 -5.02 16.23 16 15 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 16 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 17 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 18 C 0.17 2.82 5.56 -5.19 -0.03 2.79 16 19 C -0.14 -2.53 5.48 -104.48 -0.57 -3.10 16 20 C -0.04 -0.64 9.85 -39.28 -0.39 -1.03 16 21 C -0.18 -2.92 10.11 -39.44 -0.40 -3.32 16 22 C 0.09 1.43 11.18 -17.55 -0.20 1.24 16 23 N -0.50 -9.12 10.36 -13.25 -0.14 -9.26 16 24 C 0.12 2.19 10.73 -17.55 -0.19 2.01 16 25 C 0.04 0.72 6.74 -81.60 -0.55 0.17 16 26 C 0.35 5.52 5.67 36.01 0.20 5.72 16 27 F -0.20 -3.00 14.54 2.25 0.03 -2.97 16 28 F -0.17 -3.36 15.52 2.25 0.03 -3.33 16 29 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.10 1.13 5.52 -51.93 -0.29 0.84 16 32 H 0.19 3.08 7.56 -52.49 -0.40 2.68 16 33 H 0.04 1.01 4.84 -51.93 -0.25 0.75 16 34 H 0.04 0.83 7.83 -51.93 -0.41 0.42 16 35 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 36 H 0.08 1.33 7.46 -51.93 -0.39 0.94 16 37 H 0.08 1.26 7.81 -51.93 -0.41 0.85 16 38 H 0.14 2.30 8.06 -52.49 -0.42 1.88 16 39 H 0.13 1.71 8.06 -52.49 -0.42 1.28 16 40 H 0.15 1.89 8.06 -52.49 -0.42 1.47 16 41 H 0.16 2.84 7.38 -52.49 -0.39 2.45 16 42 H 0.13 1.57 8.14 -51.92 -0.42 1.14 16 LS Contribution 369.61 15.07 5.57 5.57 Total: -1.00 -32.45 369.61 -6.28 -38.73 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -4.60 Total: 4.30 kcal Atomic # 6 Polarization: 11.20 SS G_CDS: -2.67 Total: 8.53 kcal Atomic # 7 Polarization: -55.72 SS G_CDS: 0.30 Total: -55.43 kcal Atomic # 8 Polarization: -11.71 SS G_CDS: 0.08 Total: -11.63 kcal Atomic # 9 Polarization: -6.36 SS G_CDS: 0.07 Total: -6.30 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.45 -6.28 -38.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076019028.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.820 kcal (2) G-P(sol) polarization free energy of solvation -32.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds