Wall clock time and date at job start Tue Mar 31 2020 05:20:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 N 1.39942 * 125.75676 * 2 1 4 4 C 1.30445 * 108.89900 * 179.77475 * 3 2 1 5 5 C 1.41298 * 108.02106 * 0.38738 * 4 3 2 6 6 C 1.47426 * 126.41406 * 179.87882 * 5 4 3 7 7 O 1.21604 * 120.00125 * 126.49985 * 6 5 4 8 8 N 1.34773 * 119.99929 * 306.50422 * 6 5 4 9 9 C 1.46499 * 120.00204 * 354.22946 * 8 6 5 10 10 C 1.50702 * 109.47222 * 275.47728 * 9 8 6 11 11 H 1.07995 * 119.99845 * 0.02562 * 10 9 8 12 12 C 1.37878 * 119.99920 * 179.97438 * 10 9 8 13 13 N 1.31517 * 120.00008 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 119.99844 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.47274 * 0.02562 * 14 12 10 16 16 H 1.48496 * 109.46905 * 120.00302 * 14 12 10 17 17 H 1.48500 * 109.46946 * 240.00188 * 14 12 10 18 18 C 1.46508 * 119.99950 * 174.23316 * 8 6 5 19 19 C 1.50700 * 109.47013 * 89.99822 * 18 8 6 20 20 C 1.38665 * 120.41978 * 90.00075 * 19 18 8 21 21 C 1.38625 * 118.42518 * 179.97438 * 20 19 18 22 22 C 1.38229 * 119.15659 * 0.25679 * 21 20 19 23 23 N 1.31853 * 120.76242 * 359.49523 * 22 21 20 24 24 C 1.31884 * 121.72885 * 0.48966 * 23 22 21 25 25 C 1.34258 * 125.75582 * 180.02562 * 2 1 3 26 26 C 1.50700 * 126.28804 * 359.95502 * 25 2 1 27 27 F 1.39891 * 109.47317 * 30.02365 * 26 25 2 28 28 F 1.39904 * 109.47422 * 150.02898 * 26 25 2 29 29 H 1.09006 * 109.46811 * 269.97505 * 1 2 3 30 30 H 1.09000 * 109.47242 * 29.97236 * 1 2 3 31 31 H 1.08995 * 109.47724 * 149.97343 * 1 2 3 32 32 H 1.08002 * 125.99232 * 180.25987 * 4 3 2 33 33 H 1.09004 * 109.47039 * 35.48076 * 9 8 6 34 34 H 1.09001 * 109.47287 * 155.47849 * 9 8 6 35 35 H 0.97001 * 119.99869 * 179.97438 * 13 12 10 36 36 H 1.08999 * 109.46629 * 329.99492 * 18 8 6 37 37 H 1.09005 * 109.47056 * 209.99983 * 18 8 6 38 38 H 1.08001 * 120.78799 * 359.95352 * 20 19 18 39 39 H 1.07992 * 120.42684 * 179.97438 * 21 20 19 40 40 H 1.08000 * 119.62189 * 179.74943 * 22 21 20 41 41 H 1.07999 * 119.61919 * 179.75179 * 24 23 22 42 42 H 1.09010 * 109.47212 * 270.02794 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2827 1.1356 0.0000 4 6 3.5311 0.7574 0.0049 5 6 3.5598 -0.6553 -0.0009 6 6 4.7637 -1.5062 -0.0008 7 8 4.8962 -2.3722 0.8426 8 7 5.7176 -1.3242 -0.9353 9 6 5.5026 -0.3691 -2.0252 10 6 4.7323 -1.0378 -3.1345 11 1 4.4325 -2.0707 -3.0372 12 6 4.4094 -0.3305 -4.2731 13 7 4.7741 0.9276 -4.3913 14 14 3.4540 -1.1591 -5.6478 15 1 3.1654 -2.5664 -5.2717 16 1 2.1768 -0.4346 -5.8694 17 1 4.2597 -1.1349 -6.8950 18 6 6.9695 -2.0816 -0.8614 19 6 6.8218 -3.3720 -1.6256 20 6 7.1403 -3.4299 -2.9739 21 6 6.9893 -4.6383 -3.6363 22 6 6.5245 -5.7362 -2.9369 23 7 6.2359 -5.6455 -1.6535 24 6 6.3678 -4.5126 -0.9913 25 6 2.2495 -1.0895 -0.0005 26 6 1.7849 -2.5231 -0.0002 27 9 0.5544 -2.6147 -0.6593 28 9 2.7276 -3.3191 -0.6597 29 1 -0.3633 -0.0004 1.0277 30 1 -0.3634 0.8902 -0.5134 31 1 -0.3634 -0.8897 -0.5142 32 1 4.3919 1.4096 0.0101 33 1 4.9366 0.4851 -1.6533 34 1 6.4658 -0.0289 -2.4055 35 1 4.5473 1.4251 -5.1926 36 1 7.2004 -2.3009 0.1811 37 1 7.7770 -1.4922 -1.2961 38 1 7.4971 -2.5543 -3.4958 39 1 7.2275 -4.7198 -4.6865 40 1 6.4002 -6.6803 -3.4464 41 1 6.1176 -4.4759 0.0586 42 1 1.6730 -2.8686 1.0277 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076019028.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:53 Heat of formation + Delta-G solvation = -26.169615 kcal Electronic energy + Delta-G solvation = -32649.489723 eV Core-core repulsion = 28074.017049 eV Total energy + Delta-G solvation = -4575.472674 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 350.130 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -50.25067 -48.27969 -42.47102 -41.12926 -39.97020 -36.81404 -34.78768 -34.49426 -33.39869 -32.66539 -32.20741 -29.34739 -28.75980 -27.17759 -26.86397 -25.03167 -24.32189 -23.55168 -22.60179 -21.87706 -20.28800 -18.80735 -18.76084 -18.38953 -18.19572 -17.94845 -17.62649 -17.09133 -16.93415 -16.54168 -16.41662 -16.25775 -16.04372 -15.29486 -15.17864 -15.00652 -14.81675 -14.65467 -14.41511 -14.26215 -14.07420 -13.84826 -13.77526 -13.61066 -13.43649 -13.27091 -13.22535 -12.86438 -12.63606 -12.55485 -12.42336 -12.19137 -11.95249 -11.66712 -10.92310 -10.66574 -10.58160 -10.48330 -10.35460 -9.86124 -9.71521 -9.35285 -8.17649 -6.24430 0.24495 0.31918 0.48404 1.22485 1.25492 1.29111 1.34706 1.43661 1.93648 2.37039 2.40702 2.58608 2.92695 3.06048 3.14723 3.35235 3.52098 3.64587 3.73576 3.89360 4.02660 4.08611 4.16870 4.21069 4.25332 4.33661 4.44370 4.52789 4.61244 4.63171 4.71824 4.85675 4.94632 4.98329 5.29667 5.31200 5.32336 5.49400 5.68670 5.70411 5.87899 5.90497 6.15282 6.40611 6.55468 6.87596 7.11280 7.32832 7.45915 8.87890 Molecular weight = 350.13amu Principal moments of inertia in cm(-1) A = 0.008977 B = 0.005833 C = 0.004828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3118.277463 B = 4799.350508 C = 5797.859004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.340 5.340 3 N -0.294 5.294 4 C 0.087 3.913 5 C -0.239 4.239 6 C 0.597 3.403 7 O -0.574 6.574 8 N -0.585 5.585 9 C 0.250 3.750 10 C -0.508 4.508 11 H 0.036 0.964 12 C 0.031 3.969 13 N -0.913 5.913 14 Si 0.927 3.073 15 H -0.282 1.282 16 H -0.287 1.287 17 H -0.272 1.272 18 C 0.163 3.837 19 C -0.150 4.150 20 C -0.051 4.051 21 C -0.181 4.181 22 C 0.083 3.917 23 N -0.515 5.515 24 C 0.107 3.893 25 C 0.036 3.964 26 C 0.343 3.657 27 F -0.194 7.194 28 F -0.195 7.195 29 H 0.110 0.890 30 H 0.102 0.898 31 H 0.109 0.891 32 H 0.205 0.795 33 H 0.038 0.962 34 H 0.032 0.968 35 H 0.263 0.737 36 H 0.093 0.907 37 H 0.102 0.898 38 H 0.136 0.864 39 H 0.155 0.845 40 H 0.178 0.822 41 H 0.148 0.852 42 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.643 -4.296 7.205 8.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.121 5.121 3 N -0.116 5.116 4 C -0.098 4.098 5 C -0.254 4.254 6 C 0.385 3.615 7 O -0.455 6.455 8 N -0.314 5.314 9 C 0.129 3.871 10 C -0.547 4.547 11 H 0.054 0.946 12 C -0.169 4.169 13 N -0.553 5.553 14 Si 0.755 3.245 15 H -0.207 1.207 16 H -0.214 1.214 17 H -0.197 1.197 18 C 0.040 3.960 19 C -0.153 4.153 20 C -0.077 4.077 21 C -0.200 4.200 22 C -0.073 4.073 23 N -0.224 5.224 24 C -0.050 4.050 25 C -0.097 4.097 26 C 0.288 3.712 27 F -0.176 7.176 28 F -0.176 7.176 29 H 0.129 0.871 30 H 0.120 0.880 31 H 0.127 0.873 32 H 0.221 0.779 33 H 0.055 0.945 34 H 0.050 0.950 35 H 0.072 0.928 36 H 0.112 0.888 37 H 0.120 0.880 38 H 0.154 0.846 39 H 0.173 0.827 40 H 0.195 0.805 41 H 0.166 0.834 42 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -3.847 -4.308 7.908 9.793 hybrid contribution 0.180 0.001 -1.884 1.893 sum -3.667 -4.306 6.024 8.263 Atomic orbital electron populations 1.22671 0.71053 1.06817 1.06137 1.48400 1.08194 1.01672 1.53836 1.77085 1.02183 1.07607 1.24687 1.24093 0.95648 0.93115 0.96958 1.19980 0.92589 0.94634 1.18203 1.17293 0.81894 0.81865 0.80434 1.90642 1.79156 1.35202 1.40496 1.48043 1.16296 1.41170 1.25906 1.19262 0.96778 0.87635 0.83409 1.21419 1.34659 0.96999 1.01656 0.94576 1.25306 0.96699 0.95171 0.99746 1.69966 1.47570 1.08953 1.28841 0.85969 0.79063 0.78546 0.80925 1.20680 1.21362 1.19686 1.20345 0.86281 0.88860 1.00537 1.21249 1.01119 0.97050 0.95866 1.21671 0.94519 0.98118 0.93430 1.22381 1.01710 0.93576 1.02348 1.23171 0.94443 0.99760 0.89968 1.67658 1.16263 1.28018 1.10481 1.22683 0.94146 0.87923 1.00236 1.21859 0.91682 0.91300 1.04850 1.20172 0.72138 0.83715 0.95160 1.92906 1.43802 1.96353 1.84491 1.93087 1.65850 1.74582 1.84059 0.87144 0.87976 0.87322 0.77857 0.94452 0.95033 0.92768 0.88846 0.87998 0.84612 0.82689 0.80484 0.83448 0.80720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.50 11.16 127.77 1.43 2.92 16 2 N -0.34 -10.78 3.98 -354.33 -1.41 -12.19 16 3 N -0.29 -10.52 12.50 -56.27 -0.70 -11.22 16 4 C 0.09 3.18 9.99 85.65 0.86 4.03 16 5 C -0.24 -9.23 5.06 -20.15 -0.10 -9.33 16 6 C 0.60 24.15 6.21 86.66 0.54 24.69 16 7 O -0.57 -23.90 15.45 -4.04 -0.06 -23.96 16 8 N -0.59 -23.22 2.45 -834.36 -2.05 -25.27 16 9 C 0.25 11.22 5.01 85.63 0.43 11.65 16 10 C -0.51 -25.86 9.33 25.60 0.24 -25.62 16 11 H 0.04 2.00 7.81 -2.91 -0.02 1.98 16 12 C 0.03 1.61 5.46 84.65 0.46 2.07 16 13 N -0.91 -49.26 13.29 21.45 0.28 -48.98 16 14 Si 0.93 43.13 29.54 68.60 2.03 45.15 16 15 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 16 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 17 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 18 C 0.16 5.50 5.56 85.63 0.48 5.98 16 19 C -0.15 -5.32 5.48 -19.78 -0.11 -5.43 16 20 C -0.05 -1.73 9.85 22.46 0.22 -1.51 16 21 C -0.18 -5.47 10.11 22.36 0.23 -5.25 16 22 C 0.08 2.57 11.18 84.69 0.95 3.52 16 23 N -0.52 -18.63 10.36 -195.84 -2.03 -20.66 16 24 C 0.11 3.94 10.73 84.67 0.91 4.85 16 25 C 0.04 1.25 6.74 42.14 0.28 1.54 16 26 C 0.34 10.43 5.67 71.24 0.40 10.83 16 27 F -0.19 -5.47 14.54 44.97 0.65 -4.81 16 28 F -0.19 -7.72 15.52 44.97 0.70 -7.03 16 29 H 0.11 1.58 8.14 -2.38 -0.02 1.56 16 30 H 0.10 1.97 8.14 -2.39 -0.02 1.96 16 31 H 0.11 2.14 5.52 -2.39 -0.01 2.13 16 32 H 0.20 6.58 7.56 -2.91 -0.02 6.56 16 33 H 0.04 1.75 4.84 -2.39 -0.01 1.74 16 34 H 0.03 1.45 7.83 -2.39 -0.02 1.43 16 35 H 0.26 13.68 8.31 -92.71 -0.77 12.91 16 36 H 0.09 2.95 7.46 -2.39 -0.02 2.93 16 37 H 0.10 3.01 7.81 -2.38 -0.02 2.99 16 38 H 0.14 4.53 8.06 -2.91 -0.02 4.51 16 39 H 0.16 3.73 8.06 -2.91 -0.02 3.71 16 40 H 0.18 4.14 8.06 -2.91 -0.02 4.12 16 41 H 0.15 5.52 7.38 -2.91 -0.02 5.50 16 42 H 0.18 3.75 8.14 -2.38 -0.02 3.73 16 Total: -1.00 -68.78 369.61 5.69 -63.08 By element: Atomic # 1 Polarization: 19.85 SS G_CDS: 1.08 Total: 20.93 kcal Atomic # 6 Polarization: 17.74 SS G_CDS: 7.21 Total: 24.95 kcal Atomic # 7 Polarization: -112.41 SS G_CDS: -5.91 Total: -118.32 kcal Atomic # 8 Polarization: -23.90 SS G_CDS: -0.06 Total: -23.96 kcal Atomic # 9 Polarization: -13.19 SS G_CDS: 1.35 Total: -11.84 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.15 kcal Total: -68.78 5.69 -63.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076019028.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.915 kcal (2) G-P(sol) polarization free energy of solvation -68.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds