Wall clock time and date at job start Tue Mar 31 2020 06:18:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 120.00468 * 2 1 4 4 H 1.48506 * 109.46946 * 269.99742 * 3 2 1 5 5 H 1.48498 * 109.47162 * 29.99539 * 3 2 1 6 6 H 1.48493 * 109.47424 * 149.99630 * 3 2 1 7 7 C 1.37883 * 119.99692 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99943 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99721 * 180.02562 * 7 2 1 10 10 N 1.46506 * 109.46874 * 179.97438 * 9 7 2 11 11 C 1.46500 * 119.99955 * 269.99720 * 10 9 7 12 12 C 1.52994 * 109.47096 * 270.00158 * 11 10 9 13 13 F 1.39896 * 109.47204 * 60.00325 * 12 11 10 14 14 F 1.39911 * 109.46951 * 180.02562 * 12 11 10 15 15 F 1.39895 * 109.47088 * 299.99865 * 12 11 10 16 16 C 1.34775 * 119.99876 * 89.99901 * 10 9 7 17 17 O 1.21280 * 119.99937 * 359.97438 * 16 10 9 18 18 C 1.50704 * 119.99857 * 179.97438 * 16 10 9 19 19 C 1.50696 * 109.46938 * 179.97438 * 18 16 10 20 20 C 1.39370 * 119.51084 * 270.29018 * 19 18 16 21 21 C 1.36098 * 120.99091 * 180.28202 * 20 19 18 22 22 C 1.40536 * 119.65063 * 359.71066 * 21 20 19 23 23 C 1.40540 * 121.28217 * 180.02562 * 22 21 20 24 24 C 1.36091 * 119.65665 * 180.02562 * 23 22 21 25 25 C 1.39376 * 120.98533 * 359.95297 * 24 23 22 26 26 C 1.36089 * 120.99181 * 0.02562 * 25 24 23 27 27 C 1.40540 * 119.65387 * 0.02562 * 26 25 24 28 28 C 1.36095 * 119.49925 * 90.00320 * 19 18 16 29 29 H 0.97006 * 119.99623 * 0.02562 * 1 2 3 30 30 H 1.08999 * 109.47688 * 60.00118 * 9 7 2 31 31 H 1.08997 * 109.46980 * 299.99492 * 9 7 2 32 32 H 1.08997 * 109.47122 * 30.00423 * 11 10 9 33 33 H 1.08999 * 109.47153 * 149.99654 * 11 10 9 34 34 H 1.09006 * 109.46710 * 59.99937 * 18 16 10 35 35 H 1.09000 * 109.47190 * 300.00446 * 18 16 10 36 36 H 1.07998 * 119.50525 * 359.97438 * 20 19 18 37 37 H 1.07997 * 120.17524 * 179.73800 * 21 20 19 38 38 H 1.08002 * 120.17303 * 0.02639 * 23 22 21 39 39 H 1.07998 * 119.50902 * 179.97438 * 24 23 22 40 40 H 1.08007 * 119.50474 * 180.02562 * 25 24 23 41 41 H 1.07997 * 120.17251 * 180.02562 * 26 25 24 42 42 H 1.08002 * 120.17715 * 0.02562 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4969 2.0463 -1.4001 5 1 1.4468 2.6527 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0014 9 6 3.5115 -1.1941 0.0011 10 7 3.9998 -2.5754 0.0022 11 6 4.2435 -3.2652 1.2715 12 6 5.6883 -3.0245 1.7135 13 9 5.9025 -1.6521 1.8800 14 9 5.9211 -3.6837 2.9254 15 9 6.5624 -3.5182 0.7392 16 6 4.2248 -3.2116 -1.1645 17 8 4.0226 -2.6407 -2.2152 18 6 4.7276 -4.6322 -1.1633 19 6 4.8948 -5.1070 -2.5837 20 6 3.8257 -5.7225 -3.2322 21 6 3.9453 -6.1679 -4.5127 22 6 5.1618 -6.0007 -5.1962 23 6 5.3229 -6.4469 -6.5191 24 6 6.5157 -6.2685 -7.1494 25 6 7.5831 -5.6477 -6.5029 26 6 7.4636 -5.2024 -5.2225 27 6 6.2473 -5.3700 -4.5387 28 6 6.0859 -4.9230 -3.2160 29 1 -0.4850 0.8401 -0.0004 30 1 3.8746 -0.6802 0.8911 31 1 3.8751 -0.6806 -0.8889 32 1 3.5624 -2.8806 2.0306 33 1 4.0764 -4.3345 1.1419 34 1 4.0097 -5.2713 -0.6491 35 1 5.6877 -4.6774 -0.6492 36 1 2.8899 -5.8525 -2.7091 37 1 3.1096 -6.6468 -5.0011 38 1 4.5043 -6.9290 -7.0328 39 1 6.6370 -6.6127 -8.1659 40 1 8.5191 -5.5180 -7.0260 41 1 8.2991 -4.7228 -4.7344 42 1 6.9043 -4.4406 -2.7024 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076092221.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:56 Heat of formation + Delta-G solvation = -143.403156 kcal Electronic energy + Delta-G solvation = -30943.951630 eV Core-core repulsion = 26245.756704 eV Total energy + Delta-G solvation = -4698.194925 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 351.119 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -50.00078 -47.56322 -47.43999 -40.46578 -39.31195 -36.71936 -35.40135 -33.03876 -32.71158 -31.68357 -29.76778 -29.47874 -28.22870 -26.66735 -23.44593 -23.37600 -22.93796 -21.93609 -21.66280 -19.18619 -18.45064 -18.32838 -17.62565 -17.33771 -16.90769 -16.87065 -16.32856 -16.15523 -15.30205 -14.83299 -14.63253 -14.38377 -14.33676 -14.29001 -13.93479 -13.88784 -13.69097 -13.60730 -13.54367 -13.42962 -13.31301 -13.02362 -12.65845 -12.58555 -12.34166 -12.24810 -11.93407 -11.62641 -11.52056 -11.20040 -11.04703 -10.96328 -10.79067 -10.59679 -10.26530 -9.94452 -9.66634 -9.29950 -8.66660 -8.47412 -8.14001 -7.84323 -6.17096 -4.17493 0.56506 1.02790 2.09374 2.70237 2.94546 3.16096 3.24683 3.30296 3.34159 3.39750 3.98439 4.09586 4.12290 4.33390 4.39866 4.55563 4.69604 4.81745 4.88575 4.90747 5.04334 5.09308 5.17406 5.19554 5.23086 5.36626 5.42703 5.46182 5.56237 5.60233 5.77195 5.97709 6.06659 6.24055 6.25834 6.42499 6.51112 6.59794 6.67157 6.79889 6.84869 6.99442 7.03933 7.48423 7.84368 8.34452 8.67211 8.84392 9.42213 10.95698 Molecular weight = 351.12amu Principal moments of inertia in cm(-1) A = 0.010338 B = 0.003402 C = 0.002868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2707.810157 B = 8228.948144 C = 9760.669543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.076 3.924 3 Si 0.872 3.128 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.264 1.264 7 C -0.535 4.535 8 H 0.077 0.923 9 C 0.213 3.787 10 N -0.594 5.594 11 C 0.073 3.927 12 C 0.428 3.572 13 F -0.177 7.177 14 F -0.185 7.185 15 F -0.186 7.186 16 C 0.516 3.484 17 O -0.509 6.509 18 C -0.122 4.122 19 C -0.051 4.051 20 C -0.093 4.093 21 C -0.110 4.110 22 C -0.052 4.052 23 C -0.106 4.106 24 C -0.123 4.123 25 C -0.124 4.124 26 C -0.103 4.103 27 C -0.048 4.048 28 C -0.094 4.094 29 H 0.266 0.734 30 H 0.037 0.963 31 H 0.042 0.958 32 H 0.133 0.867 33 H 0.116 0.884 34 H 0.102 0.898 35 H 0.109 0.891 36 H 0.124 0.876 37 H 0.126 0.874 38 H 0.124 0.876 39 H 0.119 0.881 40 H 0.119 0.881 41 H 0.125 0.875 42 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.793 -14.471 -3.637 20.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.127 4.127 3 Si 0.698 3.302 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.188 1.188 7 C -0.573 4.573 8 H 0.095 0.905 9 C 0.093 3.907 10 N -0.326 5.326 11 C -0.055 4.055 12 C 0.372 3.628 13 F -0.158 7.158 14 F -0.167 7.167 15 F -0.168 7.168 16 C 0.303 3.697 17 O -0.383 6.383 18 C -0.161 4.161 19 C -0.051 4.051 20 C -0.111 4.111 21 C -0.127 4.127 22 C -0.052 4.052 23 C -0.123 4.123 24 C -0.141 4.141 25 C -0.142 4.142 26 C -0.121 4.121 27 C -0.048 4.048 28 C -0.112 4.112 29 H 0.076 0.924 30 H 0.055 0.945 31 H 0.060 0.940 32 H 0.151 0.849 33 H 0.134 0.866 34 H 0.120 0.880 35 H 0.127 0.873 36 H 0.142 0.858 37 H 0.144 0.856 38 H 0.142 0.858 39 H 0.137 0.863 40 H 0.137 0.863 41 H 0.143 0.857 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 13.529 -13.991 -4.232 19.917 hybrid contribution 0.501 1.048 0.207 1.180 sum 14.029 -12.943 -4.025 19.508 Atomic orbital electron populations 1.69885 1.06180 1.27164 1.49886 1.24820 0.94754 0.98939 0.94185 0.86908 0.80364 0.83830 0.79053 1.19802 1.20893 1.18811 1.21252 0.88811 0.94982 1.52255 0.90526 1.19861 0.96021 0.76593 0.98206 1.47877 1.65259 1.16515 1.02903 1.22654 0.89605 1.01638 0.91562 1.21754 0.91881 0.74422 0.74753 1.93206 1.95902 1.31453 1.95250 1.93172 1.95707 1.81121 1.46692 1.93085 1.73179 1.87494 1.62997 1.20319 0.77877 0.87700 0.83766 1.90730 1.49885 1.67447 1.30235 1.21087 1.04359 0.94982 0.95704 1.19009 0.93777 0.97485 0.94849 1.20756 0.98089 0.97144 0.95118 1.20941 0.96387 1.00681 0.94739 1.18094 0.93876 0.98961 0.94276 1.21014 0.97781 0.99813 0.93737 1.20796 0.93464 0.99933 0.99919 1.20794 0.98903 0.99308 0.95155 1.21030 0.96524 0.99534 0.95023 1.18034 0.93786 0.98805 0.94190 1.20833 0.97711 0.99110 0.93565 0.92412 0.94492 0.94028 0.84927 0.86620 0.88016 0.87283 0.85817 0.85558 0.85767 0.86281 0.86255 0.85728 0.85719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.77 13.96 55.43 0.77 -26.00 16 2 C 0.08 2.16 5.47 -17.82 -0.10 2.06 16 3 Si 0.87 21.15 27.47 -169.99 -4.67 16.48 16 4 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.26 -6.05 6.54 56.52 0.37 -5.68 16 7 C -0.53 -14.62 9.94 -34.44 -0.34 -14.96 16 8 H 0.08 2.27 8.06 -52.48 -0.42 1.84 16 9 C 0.21 4.96 4.02 -5.19 -0.02 4.94 16 10 N -0.59 -11.23 2.37 -175.06 -0.42 -11.64 16 11 C 0.07 1.01 5.33 -4.04 -0.02 0.99 16 12 C 0.43 5.77 3.29 37.15 0.12 5.90 16 13 F -0.18 -2.82 16.22 2.25 0.04 -2.78 16 14 F -0.19 -2.26 17.32 2.25 0.04 -2.22 16 15 F -0.19 -2.48 14.29 2.25 0.03 -2.45 16 16 C 0.52 9.82 7.33 -10.98 -0.08 9.73 16 17 O -0.51 -12.05 15.61 5.56 0.09 -11.96 16 18 C -0.12 -1.67 4.28 -29.03 -0.12 -1.80 16 19 C -0.05 -0.74 4.34 -104.97 -0.46 -1.20 16 20 C -0.09 -1.30 9.59 -39.93 -0.38 -1.68 16 21 C -0.11 -1.42 9.77 -39.48 -0.39 -1.81 16 22 C -0.05 -0.70 5.74 -106.84 -0.61 -1.31 16 23 C -0.11 -1.18 9.77 -39.49 -0.39 -1.57 16 24 C -0.12 -1.25 9.95 -39.93 -0.40 -1.65 16 25 C -0.12 -1.28 9.95 -39.93 -0.40 -1.67 16 26 C -0.10 -1.21 9.77 -39.49 -0.39 -1.60 16 27 C -0.05 -0.67 5.74 -106.83 -0.61 -1.28 16 28 C -0.09 -1.34 9.37 -39.48 -0.37 -1.71 16 29 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 30 H 0.04 0.83 6.31 -51.93 -0.33 0.50 16 31 H 0.04 1.05 6.85 -51.93 -0.36 0.70 16 32 H 0.13 1.77 8.07 -51.93 -0.42 1.35 16 33 H 0.12 1.17 6.44 -51.93 -0.33 0.83 16 34 H 0.10 1.12 7.34 -51.93 -0.38 0.74 16 35 H 0.11 1.30 5.41 -51.93 -0.28 1.02 16 36 H 0.12 1.57 8.06 -52.49 -0.42 1.15 16 37 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 38 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 39 H 0.12 0.90 8.06 -52.49 -0.42 0.47 16 40 H 0.12 0.93 8.06 -52.48 -0.42 0.51 16 41 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 42 H 0.12 1.59 8.06 -52.49 -0.42 1.17 16 LS Contribution 364.84 15.07 5.50 5.50 Total: -1.00 -34.03 364.84 -8.22 -42.25 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: -4.65 Total: 1.45 kcal Atomic # 6 Polarization: -3.67 SS G_CDS: -4.95 Total: -8.62 kcal Atomic # 7 Polarization: -38.00 SS G_CDS: 0.36 Total: -37.64 kcal Atomic # 8 Polarization: -12.05 SS G_CDS: 0.09 Total: -11.96 kcal Atomic # 9 Polarization: -7.57 SS G_CDS: 0.11 Total: -7.46 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.67 Total: 16.48 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -34.03 -8.22 -42.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076092221.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.154 kcal (2) G-P(sol) polarization free energy of solvation -34.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds