Wall clock time and date at job start Tue Mar 31 2020 06:18:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 120.00468 * 2 1 4 4 H 1.48506 * 109.46946 * 269.99742 * 3 2 1 5 5 H 1.48498 * 109.47162 * 29.99539 * 3 2 1 6 6 H 1.48493 * 109.47424 * 149.99630 * 3 2 1 7 7 C 1.37883 * 119.99692 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99943 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99721 * 180.02562 * 7 2 1 10 10 N 1.46506 * 109.46874 * 179.97438 * 9 7 2 11 11 C 1.46500 * 119.99955 * 269.99720 * 10 9 7 12 12 C 1.52994 * 109.47096 * 270.00158 * 11 10 9 13 13 F 1.39896 * 109.47204 * 60.00325 * 12 11 10 14 14 F 1.39911 * 109.46951 * 180.02562 * 12 11 10 15 15 F 1.39895 * 109.47088 * 299.99865 * 12 11 10 16 16 C 1.34775 * 119.99876 * 89.99901 * 10 9 7 17 17 O 1.21280 * 119.99937 * 359.97438 * 16 10 9 18 18 C 1.50704 * 119.99857 * 179.97438 * 16 10 9 19 19 C 1.50696 * 109.46938 * 179.97438 * 18 16 10 20 20 C 1.39370 * 119.51084 * 270.29018 * 19 18 16 21 21 C 1.36098 * 120.99091 * 180.28202 * 20 19 18 22 22 C 1.40536 * 119.65063 * 359.71066 * 21 20 19 23 23 C 1.40540 * 121.28217 * 180.02562 * 22 21 20 24 24 C 1.36091 * 119.65665 * 180.02562 * 23 22 21 25 25 C 1.39376 * 120.98533 * 359.95297 * 24 23 22 26 26 C 1.36089 * 120.99181 * 0.02562 * 25 24 23 27 27 C 1.40540 * 119.65387 * 0.02562 * 26 25 24 28 28 C 1.36095 * 119.49925 * 90.00320 * 19 18 16 29 29 H 0.97006 * 119.99623 * 0.02562 * 1 2 3 30 30 H 1.08999 * 109.47688 * 60.00118 * 9 7 2 31 31 H 1.08997 * 109.46980 * 299.99492 * 9 7 2 32 32 H 1.08997 * 109.47122 * 30.00423 * 11 10 9 33 33 H 1.08999 * 109.47153 * 149.99654 * 11 10 9 34 34 H 1.09006 * 109.46710 * 59.99937 * 18 16 10 35 35 H 1.09000 * 109.47190 * 300.00446 * 18 16 10 36 36 H 1.07998 * 119.50525 * 359.97438 * 20 19 18 37 37 H 1.07997 * 120.17524 * 179.73800 * 21 20 19 38 38 H 1.08002 * 120.17303 * 0.02639 * 23 22 21 39 39 H 1.07998 * 119.50902 * 179.97438 * 24 23 22 40 40 H 1.08007 * 119.50474 * 180.02562 * 25 24 23 41 41 H 1.07997 * 120.17251 * 180.02562 * 26 25 24 42 42 H 1.08002 * 120.17715 * 0.02562 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4969 2.0463 -1.4001 5 1 1.4468 2.6527 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0014 9 6 3.5115 -1.1941 0.0011 10 7 3.9998 -2.5754 0.0022 11 6 4.2435 -3.2652 1.2715 12 6 5.6883 -3.0245 1.7135 13 9 5.9025 -1.6521 1.8800 14 9 5.9211 -3.6837 2.9254 15 9 6.5624 -3.5182 0.7392 16 6 4.2248 -3.2116 -1.1645 17 8 4.0226 -2.6407 -2.2152 18 6 4.7276 -4.6322 -1.1633 19 6 4.8948 -5.1070 -2.5837 20 6 3.8257 -5.7225 -3.2322 21 6 3.9453 -6.1679 -4.5127 22 6 5.1618 -6.0007 -5.1962 23 6 5.3229 -6.4469 -6.5191 24 6 6.5157 -6.2685 -7.1494 25 6 7.5831 -5.6477 -6.5029 26 6 7.4636 -5.2024 -5.2225 27 6 6.2473 -5.3700 -4.5387 28 6 6.0859 -4.9230 -3.2160 29 1 -0.4850 0.8401 -0.0004 30 1 3.8746 -0.6802 0.8911 31 1 3.8751 -0.6806 -0.8889 32 1 3.5624 -2.8806 2.0306 33 1 4.0764 -4.3345 1.1419 34 1 4.0097 -5.2713 -0.6491 35 1 5.6877 -4.6774 -0.6492 36 1 2.8899 -5.8525 -2.7091 37 1 3.1096 -6.6468 -5.0011 38 1 4.5043 -6.9290 -7.0328 39 1 6.6370 -6.6127 -8.1659 40 1 8.5191 -5.5180 -7.0260 41 1 8.2991 -4.7228 -4.7344 42 1 6.9043 -4.4406 -2.7024 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076092221.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:55 Heat of formation + Delta-G solvation = -161.945645 kcal Electronic energy + Delta-G solvation = -30944.755692 eV Core-core repulsion = 26245.756704 eV Total energy + Delta-G solvation = -4698.998988 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 351.119 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -51.09547 -48.63025 -48.56847 -41.50107 -40.66298 -37.72133 -36.91435 -34.85837 -33.90628 -32.76226 -31.29313 -30.43226 -29.54888 -28.04148 -24.70953 -24.59818 -24.18195 -22.93116 -22.82161 -20.53959 -19.56827 -19.52377 -19.19888 -18.56767 -18.28174 -17.90688 -17.58681 -17.35325 -16.67613 -16.18026 -15.88989 -15.58966 -15.47588 -15.47104 -15.04346 -15.00549 -14.87741 -14.79171 -14.72902 -14.51762 -14.42263 -14.22968 -14.16428 -13.84884 -13.65211 -13.40095 -13.33011 -13.00050 -12.87090 -12.53095 -12.46064 -12.12696 -12.11243 -11.85429 -11.76225 -11.68796 -10.95745 -10.84107 -10.77557 -9.78233 -9.43509 -8.77063 -8.35209 -6.39881 -0.35427 0.08022 1.15024 1.31797 1.35145 1.42776 1.45659 1.75851 1.96408 2.16128 2.29162 2.85371 2.99077 3.02393 3.13427 3.30397 3.56722 3.69584 3.77349 3.96314 4.03615 4.07670 4.13252 4.27644 4.34944 4.41430 4.46489 4.50612 4.59297 4.66370 4.72639 4.86570 4.90918 5.05854 5.18106 5.31366 5.34305 5.35868 5.43073 5.56607 5.65741 5.68982 5.95089 6.13194 6.18903 6.36945 6.62201 7.14754 7.27256 8.80840 Molecular weight = 351.12amu Principal moments of inertia in cm(-1) A = 0.010338 B = 0.003402 C = 0.002868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2707.810157 B = 8228.948144 C = 9760.669543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C 0.019 3.981 3 Si 0.934 3.066 4 H -0.279 1.279 5 H -0.274 1.274 6 H -0.241 1.241 7 C -0.534 4.534 8 H 0.041 0.959 9 C 0.224 3.776 10 N -0.601 5.601 11 C 0.067 3.933 12 C 0.437 3.563 13 F -0.192 7.192 14 F -0.173 7.173 15 F -0.184 7.184 16 C 0.511 3.489 17 O -0.566 6.566 18 C -0.107 4.107 19 C -0.071 4.071 20 C -0.116 4.116 21 C -0.113 4.113 22 C -0.074 4.074 23 C -0.116 4.116 24 C -0.122 4.122 25 C -0.120 4.120 26 C -0.121 4.121 27 C -0.071 4.071 28 C -0.107 4.107 29 H 0.268 0.732 30 H 0.052 0.948 31 H 0.019 0.981 32 H 0.138 0.862 33 H 0.158 0.842 34 H 0.132 0.868 35 H 0.131 0.869 36 H 0.129 0.871 37 H 0.147 0.853 38 H 0.146 0.854 39 H 0.150 0.850 40 H 0.148 0.852 41 H 0.138 0.862 42 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.855 -15.517 -3.862 22.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.180 4.180 3 Si 0.757 3.243 4 H -0.204 1.204 5 H -0.199 1.199 6 H -0.164 1.164 7 C -0.572 4.572 8 H 0.060 0.940 9 C 0.102 3.898 10 N -0.332 5.332 11 C -0.059 4.059 12 C 0.381 3.619 13 F -0.174 7.174 14 F -0.155 7.155 15 F -0.165 7.165 16 C 0.301 3.699 17 O -0.444 6.444 18 C -0.146 4.146 19 C -0.071 4.071 20 C -0.134 4.134 21 C -0.131 4.131 22 C -0.074 4.074 23 C -0.134 4.134 24 C -0.140 4.140 25 C -0.138 4.138 26 C -0.139 4.139 27 C -0.071 4.071 28 C -0.125 4.125 29 H 0.078 0.922 30 H 0.070 0.930 31 H 0.037 0.963 32 H 0.156 0.844 33 H 0.175 0.825 34 H 0.150 0.850 35 H 0.148 0.852 36 H 0.147 0.853 37 H 0.165 0.835 38 H 0.164 0.836 39 H 0.168 0.832 40 H 0.166 0.834 41 H 0.156 0.844 42 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 15.622 -15.078 -4.409 22.155 hybrid contribution -0.119 1.255 0.181 1.274 sum 15.503 -13.823 -4.228 21.196 Atomic orbital electron populations 1.70020 1.07943 1.28248 1.51686 1.25695 0.95538 1.02811 0.93988 0.85913 0.80080 0.79356 0.78903 1.20444 1.19901 1.16389 1.21486 0.90999 0.93601 1.51146 0.94024 1.19453 0.93237 0.79526 0.97598 1.47823 1.64901 1.15349 1.05084 1.23004 0.89962 1.03614 0.89309 1.21503 0.91494 0.73788 0.75116 1.93179 1.95975 1.32859 1.95363 1.93202 1.95600 1.80736 1.45921 1.93091 1.73083 1.87346 1.62996 1.21253 0.76571 0.89305 0.82775 1.90695 1.52368 1.69056 1.32257 1.21081 1.05872 0.91433 0.96253 1.19160 0.94225 0.98331 0.95386 1.20949 0.98357 0.98162 0.95929 1.21251 0.97099 1.00193 0.94545 1.18434 0.93976 0.99521 0.95516 1.21328 0.99144 0.99903 0.93016 1.21226 0.92810 0.98756 1.01183 1.21211 1.00151 0.97819 0.94639 1.21286 0.96352 1.00344 0.95912 1.18345 0.94959 0.99384 0.94428 1.21038 0.97996 0.99314 0.94134 0.92246 0.92997 0.96258 0.84441 0.82464 0.84991 0.85150 0.85306 0.83493 0.83632 0.83234 0.83413 0.84380 0.85087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.75 13.96 21.45 0.30 -57.45 16 2 C 0.02 1.07 5.47 84.66 0.46 1.53 16 3 Si 0.93 43.85 27.47 68.60 1.88 45.74 16 4 H -0.28 -13.29 7.11 99.48 0.71 -12.59 16 5 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 6 H -0.24 -10.30 6.54 99.48 0.65 -9.65 16 7 C -0.53 -29.87 9.94 25.60 0.25 -29.62 16 8 H 0.04 2.56 8.06 -2.91 -0.02 2.53 16 9 C 0.22 10.43 4.02 85.63 0.34 10.78 16 10 N -0.60 -22.40 2.37 -826.16 -1.96 -24.37 16 11 C 0.07 1.70 5.33 86.38 0.46 2.16 16 12 C 0.44 10.79 3.29 71.98 0.24 11.03 16 13 F -0.19 -5.80 16.22 44.97 0.73 -5.07 16 14 F -0.17 -3.74 17.32 44.97 0.78 -2.96 16 15 F -0.18 -4.48 14.29 44.97 0.64 -3.84 16 16 C 0.51 19.43 7.33 87.66 0.64 20.07 16 17 O -0.57 -27.63 15.61 -3.03 -0.05 -27.68 16 18 C -0.11 -2.82 4.28 29.10 0.12 -2.70 16 19 C -0.07 -2.05 4.34 -20.09 -0.09 -2.14 16 20 C -0.12 -3.27 9.59 22.04 0.21 -3.06 16 21 C -0.11 -2.93 9.77 22.33 0.22 -2.71 16 22 C -0.07 -1.96 5.74 -21.30 -0.12 -2.08 16 23 C -0.12 -2.40 9.77 22.33 0.22 -2.18 16 24 C -0.12 -2.15 9.95 22.04 0.22 -1.93 16 25 C -0.12 -2.20 9.95 22.04 0.22 -1.98 16 26 C -0.12 -2.71 9.77 22.33 0.22 -2.49 16 27 C -0.07 -1.95 5.74 -21.29 -0.12 -2.08 16 28 C -0.11 -3.04 9.37 22.33 0.21 -2.83 16 29 H 0.27 15.43 8.31 -92.70 -0.77 14.66 16 30 H 0.05 2.27 6.31 -2.39 -0.02 2.26 16 31 H 0.02 0.99 6.85 -2.39 -0.02 0.98 16 32 H 0.14 3.42 8.07 -2.39 -0.02 3.41 16 33 H 0.16 2.66 6.44 -2.39 -0.02 2.64 16 34 H 0.13 2.61 7.34 -2.38 -0.02 2.60 16 35 H 0.13 2.83 5.41 -2.39 -0.01 2.82 16 36 H 0.13 3.31 8.06 -2.91 -0.02 3.29 16 37 H 0.15 2.96 8.06 -2.91 -0.02 2.94 16 38 H 0.15 2.25 8.06 -2.91 -0.02 2.22 16 39 H 0.15 1.68 8.06 -2.91 -0.02 1.66 16 40 H 0.15 1.80 8.06 -2.91 -0.02 1.77 16 41 H 0.14 2.55 8.06 -2.91 -0.02 2.52 16 42 H 0.13 3.34 8.06 -2.91 -0.02 3.32 16 Total: -1.00 -77.18 364.84 7.05 -70.14 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: 1.01 Total: 15.73 kcal Atomic # 6 Polarization: -13.94 SS G_CDS: 3.71 Total: -10.23 kcal Atomic # 7 Polarization: -80.15 SS G_CDS: -1.66 Total: -81.82 kcal Atomic # 8 Polarization: -27.63 SS G_CDS: -0.05 Total: -27.68 kcal Atomic # 9 Polarization: -14.02 SS G_CDS: 2.15 Total: -11.87 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 1.88 Total: 45.74 kcal Total: -77.18 7.05 -70.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076092221.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.808 kcal (2) G-P(sol) polarization free energy of solvation -77.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds