Wall clock time and date at job start Tue Mar 31 2020 05:44:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46497 * 109.47188 * 2 1 4 4 C 1.46497 * 119.99974 * 269.99961 * 3 2 1 5 5 C 1.50696 * 109.47477 * 269.99812 * 4 3 2 6 6 H 1.07999 * 119.99861 * 0.02562 * 5 4 3 7 7 C 1.37877 * 120.00536 * 179.97438 * 5 4 3 8 8 N 1.31514 * 119.99523 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00314 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47107 * 89.99913 * 9 7 5 11 11 H 1.48505 * 109.47235 * 210.00157 * 9 7 5 12 12 H 1.48505 * 109.47168 * 330.00032 * 9 7 5 13 13 C 1.34780 * 120.00026 * 90.00358 * 3 2 1 14 14 O 1.21283 * 119.99925 * 179.97438 * 13 3 2 15 15 C 1.50701 * 119.99669 * 359.97438 * 13 3 2 16 16 N 1.46906 * 109.46965 * 180.02562 * 15 13 3 17 17 C 1.47020 * 110.99867 * 293.63462 * 16 15 13 18 18 C 1.53097 * 109.25663 * 177.60414 * 17 16 15 19 19 O 1.43021 * 109.25605 * 56.85187 * 18 17 16 20 20 C 1.43021 * 113.73613 * 301.32802 * 19 18 17 21 21 H 1.08995 * 109.50535 * 298.73468 * 20 19 18 22 22 C 1.50700 * 109.50261 * 178.60781 * 20 19 18 23 23 C 1.38247 * 119.97435 * 324.93681 * 22 20 19 24 24 C 1.38200 * 120.02495 * 179.77075 * 23 22 20 25 25 C 1.38457 * 119.97026 * 0.50948 * 24 23 22 26 26 F 1.35105 * 120.02337 * 179.76853 * 25 24 23 27 27 C 1.38464 * 119.95257 * 359.74619 * 25 24 23 28 28 C 1.38197 * 119.97299 * 0.02562 * 27 25 24 29 29 C 1.47009 * 111.00252 * 170.00004 * 16 15 13 30 30 H 1.08995 * 109.47186 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46987 * 300.00026 * 1 2 3 32 32 H 1.09001 * 109.47087 * 59.99407 * 1 2 3 33 33 H 1.09001 * 109.46987 * 239.99974 * 2 1 3 34 34 H 1.09001 * 109.47087 * 120.00593 * 2 1 3 35 35 H 1.08997 * 109.47423 * 30.00546 * 4 3 2 36 36 H 1.09010 * 109.46962 * 150.00251 * 4 3 2 37 37 H 0.97004 * 119.99770 * 180.02562 * 8 7 5 38 38 H 1.08993 * 109.47133 * 60.00295 * 15 13 3 39 39 H 1.08996 * 109.47320 * 300.00036 * 15 13 3 40 40 H 1.08998 * 109.50492 * 297.54142 * 17 16 15 41 41 H 1.09007 * 109.50106 * 57.67293 * 17 16 15 42 42 H 1.08995 * 109.50808 * 296.91455 * 18 17 16 43 43 H 1.08995 * 109.54142 * 176.80219 * 18 17 16 44 44 H 1.07998 * 119.98767 * 0.02562 * 23 22 20 45 45 H 1.07998 * 120.01324 * 180.25575 * 24 23 22 46 46 H 1.08001 * 120.01408 * 180.02562 * 27 25 24 47 47 H 1.07995 * 119.98924 * 180.02562 * 28 27 25 48 48 H 1.08999 * 109.50465 * 302.33238 * 29 16 15 49 49 H 1.08998 * 109.50618 * 62.41050 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.6858 1.8350 -1.7038 6 1 4.3427 1.2303 -1.0962 7 6 4.1492 2.3896 -2.8780 8 7 3.3491 3.1257 -3.6181 9 14 5.9131 2.0955 -3.4176 10 1 5.9760 0.8744 -4.2601 11 1 6.3923 3.2627 -4.2009 12 1 6.7735 1.9159 -2.2206 13 6 2.2431 2.0165 1.1672 14 8 2.6478 3.1598 1.1672 15 6 1.9914 1.3062 2.4723 16 7 2.3092 2.2064 3.5889 17 6 3.7483 2.5043 3.6323 18 6 4.0258 3.4898 4.7706 19 8 3.5502 2.9359 6.0004 20 6 2.1522 2.6343 5.9935 21 1 1.5832 3.5494 5.8302 22 6 1.7619 2.0273 7.3165 23 6 2.6462 1.2014 7.9852 24 6 2.2912 0.6481 9.2008 25 6 1.0453 0.9127 9.7438 26 9 0.6953 0.3685 10.9298 27 6 0.1584 1.7357 9.0705 28 6 0.5175 2.2917 7.8573 29 6 1.8558 1.6402 4.8676 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 1.5817 1.6878 -2.0283 36 1 2.0956 3.1411 -1.1383 37 1 3.6750 3.5155 -4.4444 38 1 2.6213 0.4186 2.5302 39 1 0.9434 1.0125 2.5299 40 1 4.3056 1.5835 3.8041 41 1 4.0571 2.9462 2.6849 42 1 3.5112 4.4299 4.5717 43 1 5.0982 3.6702 4.8433 44 1 3.6164 0.9919 7.5595 45 1 2.9837 0.0063 9.7251 46 1 -0.8135 1.9431 9.4933 47 1 -0.1739 2.9341 7.3322 48 1 0.7833 1.4511 4.8219 49 1 2.3822 0.7051 5.0587 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076878641.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:59 Heat of formation + Delta-G solvation = -85.690050 kcal Electronic energy + Delta-G solvation = -30985.703359 eV Core-core repulsion = 26634.650334 eV Total energy + Delta-G solvation = -4351.053025 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 350.179 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -49.20078 -40.37346 -39.28433 -38.39662 -35.72732 -35.03559 -32.83705 -32.79310 -31.48208 -30.14110 -29.67816 -28.99694 -26.98307 -24.95808 -24.26719 -23.38956 -23.05190 -22.47801 -21.64537 -20.39456 -18.39643 -18.01201 -17.00719 -16.80917 -16.61014 -16.36119 -16.03361 -15.87479 -15.58309 -15.34860 -15.21928 -14.76042 -14.52479 -14.25076 -14.16418 -13.88987 -13.78000 -13.45433 -13.40774 -13.27765 -12.93290 -12.64429 -12.54365 -12.11684 -11.95831 -11.85942 -11.66588 -11.49573 -11.31739 -11.26706 -11.11995 -10.93041 -10.76546 -10.65180 -10.52014 -10.13689 -9.87392 -9.65338 -9.44657 -9.01269 -8.80485 -8.45842 -8.27089 -7.67288 -6.06520 -4.11350 0.74569 0.90109 3.14976 3.27504 3.34031 3.36330 3.41757 3.50385 3.61077 3.92739 4.11669 4.40979 4.42428 4.51452 4.55832 4.75260 4.91110 4.95229 5.00739 5.02368 5.13119 5.20655 5.25523 5.28253 5.37556 5.39947 5.49422 5.51613 5.54760 5.61594 5.66045 5.67623 5.76266 5.77698 5.91984 5.92577 5.99484 6.07118 6.19489 6.21029 6.44762 6.52916 6.80884 6.91828 7.07991 7.11168 7.43688 7.53695 7.90070 8.21473 8.41237 8.88332 9.09785 9.53844 11.01423 Molecular weight = 350.18amu Principal moments of inertia in cm(-1) A = 0.019060 B = 0.002138 C = 0.002021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.669063 B =13090.154375 C =13848.672982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.106 3.894 3 N -0.599 5.599 4 C 0.248 3.752 5 C -0.525 4.525 6 H 0.056 0.944 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.897 3.103 10 H -0.281 1.281 11 H -0.285 1.285 12 H -0.275 1.275 13 C 0.507 3.493 14 O -0.525 6.525 15 C 0.037 3.963 16 N -0.517 5.517 17 C 0.011 3.989 18 C 0.069 3.931 19 O -0.382 6.382 20 C 0.138 3.862 21 H 0.080 0.920 22 C -0.089 4.089 23 C -0.062 4.062 24 C -0.157 4.157 25 C 0.097 3.903 26 F -0.142 7.142 27 C -0.155 4.155 28 C -0.078 4.078 29 C 0.030 3.970 30 H 0.059 0.941 31 H 0.050 0.950 32 H 0.061 0.939 33 H 0.082 0.918 34 H 0.061 0.939 35 H 0.031 0.969 36 H 0.043 0.957 37 H 0.263 0.737 38 H 0.058 0.942 39 H 0.098 0.902 40 H 0.036 0.964 41 H 0.114 0.886 42 H 0.064 0.936 43 H 0.100 0.900 44 H 0.138 0.862 45 H 0.135 0.865 46 H 0.137 0.863 47 H 0.136 0.864 48 H 0.086 0.914 49 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.116 -6.411 22.844 24.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.018 4.018 3 N -0.331 5.331 4 C 0.129 3.871 5 C -0.564 4.564 6 H 0.074 0.926 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.725 3.275 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.200 1.200 13 C 0.293 3.707 14 O -0.401 6.401 15 C -0.094 4.094 16 N -0.242 5.242 17 C -0.116 4.116 18 C -0.008 4.008 19 O -0.301 6.301 20 C 0.080 3.920 21 H 0.098 0.902 22 C -0.090 4.090 23 C -0.080 4.080 24 C -0.175 4.175 25 C 0.078 3.922 26 F -0.120 7.120 27 C -0.173 4.173 28 C -0.096 4.096 29 C -0.098 4.098 30 H 0.078 0.922 31 H 0.069 0.931 32 H 0.080 0.920 33 H 0.101 0.899 34 H 0.080 0.920 35 H 0.049 0.951 36 H 0.061 0.939 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.116 0.884 40 H 0.054 0.946 41 H 0.132 0.868 42 H 0.082 0.918 43 H 0.118 0.882 44 H 0.156 0.844 45 H 0.153 0.847 46 H 0.155 0.845 47 H 0.154 0.846 48 H 0.104 0.896 49 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -6.045 -5.292 22.763 24.139 hybrid contribution 1.113 -1.159 -0.370 1.649 sum -4.932 -6.452 22.393 23.821 Atomic orbital electron populations 1.22223 0.96760 1.01380 1.02382 1.21411 0.93546 0.84316 1.02553 1.48267 1.63989 1.13173 1.07700 1.19252 0.96174 0.93665 0.78051 1.21412 0.96935 1.31844 1.06234 0.92611 1.24937 0.97816 0.94947 0.96439 1.69932 1.35672 1.33394 1.14280 0.86511 0.84711 0.77684 0.78581 1.20677 1.21077 1.19955 1.20065 0.78919 0.87055 0.84655 1.90630 1.44998 1.17707 1.86767 1.22093 1.02375 0.94202 0.90715 1.61841 1.16937 1.43994 1.01429 1.23010 0.87371 0.98994 1.02239 1.22690 0.99873 0.95981 0.82252 1.87943 1.22774 1.83432 1.35933 1.20801 0.83761 0.97111 0.90360 0.90236 1.19673 0.94620 0.98594 0.96134 1.20917 0.99719 0.94216 0.93187 1.21186 0.95689 1.03117 0.97543 1.17781 0.94742 0.96973 0.82740 1.91501 1.92368 1.84126 1.44042 1.21092 1.00358 0.99480 0.96415 1.20850 0.95784 0.98587 0.94360 1.22761 1.01533 0.96241 0.89297 0.92208 0.93088 0.91953 0.89934 0.92016 0.95084 0.93855 0.92717 0.92417 0.88442 0.94604 0.86793 0.91750 0.88176 0.84426 0.84680 0.84547 0.84595 0.89583 0.93876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.16 10.24 37.16 0.38 -1.78 16 2 C 0.11 1.62 5.93 -4.04 -0.02 1.60 16 3 N -0.60 -12.17 2.46 -175.06 -0.43 -12.60 16 4 C 0.25 6.32 5.16 -5.20 -0.03 6.29 16 5 C -0.53 -14.58 9.39 -34.44 -0.32 -14.90 16 6 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 7 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 8 N -0.89 -26.26 13.29 55.43 0.74 -25.52 16 9 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 13 C 0.51 10.10 7.38 -10.98 -0.08 10.02 16 14 O -0.52 -12.60 13.93 5.56 0.08 -12.52 16 15 C 0.04 0.54 4.00 -4.97 -0.02 0.52 16 16 N -0.52 -7.33 4.46 -235.75 -1.05 -8.38 16 17 C 0.01 0.17 5.29 -3.71 -0.02 0.15 16 18 C 0.07 0.85 7.01 37.21 0.26 1.11 16 19 O -0.38 -4.62 9.62 -35.23 -0.34 -4.96 16 20 C 0.14 1.46 3.01 -27.84 -0.08 1.38 16 21 H 0.08 0.85 8.05 -51.93 -0.42 0.43 16 22 C -0.09 -0.84 5.01 -104.62 -0.52 -1.36 16 23 C -0.06 -0.57 9.35 -39.59 -0.37 -0.94 16 24 C -0.16 -1.34 10.03 -39.51 -0.40 -1.74 16 25 C 0.10 0.88 7.30 -39.42 -0.29 0.59 16 26 F -0.14 -1.39 17.27 2.25 0.04 -1.35 16 27 C -0.15 -1.23 10.03 -39.51 -0.40 -1.63 16 28 C -0.08 -0.62 9.68 -39.59 -0.38 -1.00 16 29 C 0.03 0.33 4.91 -3.72 -0.02 0.31 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.05 0.61 7.22 -51.93 -0.37 0.24 16 32 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.08 1.33 8.07 -51.93 -0.42 0.91 16 34 H 0.06 0.78 6.44 -51.93 -0.33 0.45 16 35 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 36 H 0.04 1.26 7.42 -51.92 -0.39 0.87 16 37 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 38 H 0.06 0.77 7.38 -51.93 -0.38 0.39 16 39 H 0.10 1.20 7.08 -51.93 -0.37 0.83 16 40 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.11 2.04 5.88 -51.93 -0.31 1.73 16 42 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.10 1.07 8.14 -51.93 -0.42 0.64 16 44 H 0.14 1.23 7.63 -52.49 -0.40 0.83 16 45 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 46 H 0.14 0.83 8.06 -52.49 -0.42 0.40 16 47 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 48 H 0.09 0.83 8.09 -51.93 -0.42 0.41 16 49 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 401.52 15.07 6.05 6.05 Total: -1.00 -32.59 401.52 -9.93 -42.52 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: -7.58 Total: -0.03 kcal Atomic # 6 Polarization: 2.65 SS G_CDS: -2.41 Total: 0.24 kcal Atomic # 7 Polarization: -45.75 SS G_CDS: -0.75 Total: -46.50 kcal Atomic # 8 Polarization: -17.22 SS G_CDS: -0.26 Total: -17.48 kcal Atomic # 9 Polarization: -1.39 SS G_CDS: 0.04 Total: -1.35 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -32.59 -9.93 -42.52 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076878641.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.172 kcal (2) G-P(sol) polarization free energy of solvation -32.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds