Wall clock time and date at job start Tue Mar 31 2020 05:45:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46506 * 109.47320 * 2 1 4 4 C 1.46499 * 119.99537 * 269.99999 * 3 2 1 5 5 C 1.50697 * 109.46949 * 269.99553 * 4 3 2 6 6 H 1.08004 * 120.00186 * 0.02562 * 5 4 3 7 7 C 1.37881 * 120.00081 * 180.02562 * 5 4 3 8 8 N 1.31517 * 119.99813 * 180.02562 * 7 5 4 9 9 Si 1.86797 * 120.00047 * 0.02562 * 7 5 4 10 10 H 1.48497 * 109.47231 * 89.99796 * 9 7 5 11 11 H 1.48499 * 109.47342 * 210.00322 * 9 7 5 12 12 H 1.48505 * 109.46935 * 330.00024 * 9 7 5 13 13 C 1.34777 * 120.00264 * 89.99349 * 3 2 1 14 14 O 1.21283 * 119.99750 * 180.02562 * 13 3 2 15 15 C 1.50702 * 119.99928 * 0.28128 * 13 3 2 16 16 N 1.46902 * 109.47027 * 179.72353 * 15 13 3 17 17 C 1.47009 * 110.99749 * 66.04308 * 16 15 13 18 18 C 1.53109 * 109.25434 * 182.39152 * 17 16 15 19 19 O 1.43017 * 109.25694 * 303.15206 * 18 17 16 20 20 C 1.43015 * 113.73545 * 58.67036 * 19 18 17 21 21 H 1.09004 * 109.50739 * 61.26433 * 20 19 18 22 22 C 1.50705 * 109.50289 * 181.34863 * 20 19 18 23 23 C 1.38240 * 119.97334 * 39.72814 * 22 20 19 24 24 C 1.38207 * 120.02410 * 179.72619 * 23 22 20 25 25 C 1.38457 * 119.97178 * 0.52492 * 24 23 22 26 26 F 1.35097 * 120.02451 * 179.72907 * 25 24 23 27 27 C 1.38464 * 119.95142 * 359.74744 * 25 24 23 28 28 C 1.38203 * 119.96980 * 0.02562 * 27 25 24 29 29 C 1.47016 * 110.99814 * 189.68148 * 16 15 13 30 30 H 1.08997 * 109.47106 * 300.00561 * 1 2 3 31 31 H 1.09004 * 109.46895 * 60.00075 * 1 2 3 32 32 H 1.08992 * 109.47180 * 180.02562 * 1 2 3 33 33 H 1.08994 * 109.47354 * 239.99891 * 2 1 3 34 34 H 1.09001 * 109.47139 * 119.99465 * 2 1 3 35 35 H 1.09001 * 109.47567 * 29.99407 * 4 3 2 36 36 H 1.09005 * 109.47076 * 149.99913 * 4 3 2 37 37 H 0.97004 * 119.99796 * 179.97438 * 8 7 5 38 38 H 1.09004 * 109.46965 * 299.72211 * 15 13 3 39 39 H 1.08994 * 109.46990 * 59.72065 * 15 13 3 40 40 H 1.09001 * 109.51188 * 302.32338 * 17 16 15 41 41 H 1.09001 * 109.51091 * 62.42093 * 17 16 15 42 42 H 1.09000 * 109.50177 * 63.09107 * 18 17 16 43 43 H 1.08997 * 109.50540 * 183.21875 * 18 17 16 44 44 H 1.07994 * 119.99014 * 359.97438 * 23 22 20 45 45 H 1.08000 * 120.01312 * 180.25123 * 24 23 22 46 46 H 1.07995 * 120.01657 * 180.02562 * 27 25 24 47 47 H 1.07997 * 119.98151 * 179.97438 * 28 27 25 48 48 H 1.09000 * 109.50250 * 297.53949 * 29 16 15 49 49 H 1.09004 * 109.50921 * 57.66929 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2625 2.0717 -1.2688 5 6 3.6858 1.8349 -1.7037 6 1 4.3427 1.2302 -1.0961 7 6 4.1495 2.3903 -2.8775 8 7 5.3915 2.1832 -3.2573 9 14 3.0137 3.4369 -3.9282 10 1 3.1174 4.8568 -3.5060 11 1 3.4067 3.3146 -5.3550 12 1 1.6138 2.9711 -3.7587 13 6 2.2429 2.0167 1.1672 14 8 2.6468 3.1603 1.1671 15 6 1.9977 1.3042 2.4723 16 7 2.3209 2.2026 3.5888 17 6 1.3938 3.3426 3.6330 18 6 1.8022 4.2817 4.7712 19 8 1.8217 3.5517 6.0009 20 6 2.7146 2.4346 5.9931 21 1 3.7339 2.7845 5.8291 22 6 2.6354 1.7178 7.3164 23 6 1.4129 1.5525 7.9402 24 6 1.3383 0.8904 9.1511 25 6 2.4900 0.4022 9.7446 26 9 2.4190 -0.2404 10.9308 27 6 3.7147 0.5734 9.1216 28 6 3.7862 1.2317 7.9085 29 6 2.3156 1.4769 4.8674 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.5818 1.6876 -2.0285 36 1 2.0956 3.1410 -1.1385 37 1 5.7176 2.5736 -4.0832 38 1 0.9499 1.0100 2.5343 39 1 2.6281 0.4167 2.5258 40 1 1.4328 3.8805 2.6857 41 1 0.3800 2.9810 3.8047 42 1 2.7948 4.6853 4.5716 43 1 1.0844 5.0986 4.8443 44 1 0.5153 1.9373 7.4793 45 1 0.3826 0.7577 9.6363 46 1 4.6137 0.1926 9.5833 47 1 4.7413 1.3656 7.4226 48 1 1.3166 1.0855 5.0595 49 1 3.0274 0.6527 4.8211 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076878644.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:04 Heat of formation + Delta-G solvation = -80.463370 kcal Electronic energy + Delta-G solvation = -31002.692880 eV Core-core repulsion = 26651.866500 eV Total energy + Delta-G solvation = -4350.826379 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 350.179 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -49.20411 -40.40940 -39.36425 -38.45231 -35.81489 -35.12746 -32.83417 -32.72521 -31.48741 -30.42787 -29.76117 -29.08866 -27.43211 -25.01268 -24.29349 -23.41578 -23.03079 -22.32748 -21.57224 -20.41705 -18.42877 -18.01631 -17.04832 -16.93725 -16.83311 -16.59188 -16.10052 -15.88210 -15.50180 -15.37380 -15.36152 -14.76796 -14.61817 -14.38765 -14.03311 -13.86283 -13.66054 -13.58200 -13.51401 -13.41079 -12.98756 -12.66256 -12.57597 -12.28643 -12.09516 -12.01574 -11.78862 -11.52110 -11.47561 -11.34370 -11.24810 -11.00864 -10.74822 -10.67593 -10.51407 -10.16479 -9.90001 -9.54167 -9.44781 -9.07230 -8.85450 -8.59987 -8.34019 -7.73870 -6.09589 -4.08205 0.73939 0.89906 3.12878 3.27284 3.28742 3.33137 3.34901 3.45092 3.60590 3.92344 4.01352 4.38149 4.39935 4.50584 4.55040 4.72665 4.84995 4.91198 4.97578 5.00427 5.08439 5.14262 5.20226 5.24353 5.28600 5.36892 5.46249 5.49161 5.51145 5.54678 5.63759 5.65431 5.66531 5.77640 5.87053 5.90303 5.91926 5.95740 6.09977 6.18450 6.33284 6.52558 6.63489 6.82446 6.87381 6.94431 7.05631 7.32817 7.59957 8.22586 8.46014 8.92251 8.98089 9.50618 11.03815 Molecular weight = 350.18amu Principal moments of inertia in cm(-1) A = 0.019039 B = 0.002108 C = 0.002085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.310134 B =13282.676599 C =13428.643875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.106 3.894 3 N -0.594 5.594 4 C 0.218 3.782 5 C -0.527 4.527 6 H 0.074 0.926 7 C 0.072 3.928 8 N -0.897 5.897 9 Si 0.876 3.124 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.267 1.267 13 C 0.510 3.490 14 O -0.523 6.523 15 C 0.039 3.961 16 N -0.517 5.517 17 C 0.012 3.988 18 C 0.068 3.932 19 O -0.381 6.381 20 C 0.137 3.863 21 H 0.080 0.920 22 C -0.090 4.090 23 C -0.062 4.062 24 C -0.157 4.157 25 C 0.098 3.902 26 F -0.142 7.142 27 C -0.155 4.155 28 C -0.076 4.076 29 C 0.031 3.969 30 H 0.049 0.951 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.085 0.915 34 H 0.066 0.934 35 H 0.029 0.971 36 H 0.035 0.965 37 H 0.264 0.736 38 H 0.058 0.942 39 H 0.101 0.899 40 H 0.111 0.889 41 H 0.035 0.965 42 H 0.065 0.935 43 H 0.099 0.901 44 H 0.136 0.864 45 H 0.135 0.865 46 H 0.137 0.863 47 H 0.137 0.863 48 H 0.043 0.957 49 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.356 -4.623 22.364 25.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.018 4.018 3 N -0.326 5.326 4 C 0.098 3.902 5 C -0.566 4.566 6 H 0.092 0.908 7 C -0.131 4.131 8 N -0.536 5.536 9 Si 0.703 3.297 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.191 1.191 13 C 0.296 3.704 14 O -0.399 6.399 15 C -0.092 4.092 16 N -0.242 5.242 17 C -0.115 4.115 18 C -0.009 4.009 19 O -0.300 6.300 20 C 0.079 3.921 21 H 0.098 0.902 22 C -0.091 4.091 23 C -0.080 4.080 24 C -0.176 4.176 25 C 0.079 3.921 26 F -0.120 7.120 27 C -0.173 4.173 28 C -0.094 4.094 29 C -0.098 4.098 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.104 0.896 34 H 0.085 0.915 35 H 0.047 0.953 36 H 0.053 0.947 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.119 0.881 40 H 0.129 0.871 41 H 0.053 0.947 42 H 0.083 0.917 43 H 0.117 0.883 44 H 0.154 0.846 45 H 0.153 0.847 46 H 0.155 0.845 47 H 0.155 0.845 48 H 0.061 0.939 49 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -9.646 -3.752 22.311 24.595 hybrid contribution -1.110 -0.159 -0.619 1.280 sum -10.755 -3.911 21.692 24.526 Atomic orbital electron populations 1.22232 0.96830 1.01589 1.02122 1.21440 0.93312 0.83954 1.03124 1.47950 1.64330 1.13374 1.06986 1.19628 0.97315 0.93302 0.80001 1.21321 0.95313 1.32849 1.07083 0.90765 1.24865 0.94989 0.95835 0.97378 1.69899 1.15120 1.44988 1.23545 0.86853 0.81412 0.81623 0.79785 1.19930 1.21098 1.19149 1.20102 0.78533 0.87119 0.84663 1.90630 1.44593 1.17977 1.86747 1.22067 1.00562 0.96151 0.90425 1.61799 1.51978 1.08886 1.01518 1.22994 0.93020 0.93410 1.02097 1.22685 1.02410 0.93441 0.82341 1.87950 1.64088 1.42190 1.35800 1.20822 0.94667 0.86213 0.90371 0.90167 1.19654 0.93629 0.99688 0.96089 1.20892 0.98189 0.95393 0.93560 1.21175 0.97798 1.01346 0.97291 1.17780 0.94865 0.96763 0.82729 1.91500 1.97212 1.79322 1.43981 1.21108 0.96808 1.02609 0.96808 1.20889 0.98405 0.96153 0.93948 1.22769 1.01150 0.96719 0.89141 0.93212 0.92160 0.91949 0.89615 0.91544 0.95346 0.94671 0.92579 0.92385 0.88131 0.87128 0.94724 0.91665 0.88260 0.84575 0.84691 0.84501 0.84519 0.93872 0.89405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.01 10.24 37.16 0.38 -1.63 16 2 C 0.11 1.56 5.94 -4.04 -0.02 1.53 16 3 N -0.59 -11.66 2.46 -175.06 -0.43 -12.09 16 4 C 0.22 5.19 4.23 -5.20 -0.02 5.17 16 5 C -0.53 -14.93 9.94 -34.44 -0.34 -15.27 16 6 H 0.07 2.32 8.06 -52.48 -0.42 1.89 16 7 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 8 N -0.90 -27.50 13.96 55.43 0.77 -26.72 16 9 Si 0.88 21.36 27.47 -169.99 -4.67 16.69 16 10 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.27 -6.10 6.54 56.52 0.37 -5.73 16 13 C 0.51 9.88 7.38 -10.98 -0.08 9.80 16 14 O -0.52 -12.24 13.90 5.55 0.08 -12.16 16 15 C 0.04 0.55 4.00 -4.97 -0.02 0.53 16 16 N -0.52 -7.20 4.47 -235.75 -1.05 -8.25 16 17 C 0.01 0.17 5.29 -3.71 -0.02 0.15 16 18 C 0.07 0.79 7.01 37.21 0.26 1.06 16 19 O -0.38 -4.47 9.78 -35.23 -0.34 -4.82 16 20 C 0.14 1.45 3.01 -27.83 -0.08 1.37 16 21 H 0.08 0.88 8.00 -51.93 -0.42 0.46 16 22 C -0.09 -0.84 4.98 -104.62 -0.52 -1.36 16 23 C -0.06 -0.55 9.35 -39.59 -0.37 -0.92 16 24 C -0.16 -1.33 10.03 -39.51 -0.40 -1.72 16 25 C 0.10 0.89 7.30 -39.42 -0.29 0.60 16 26 F -0.14 -1.39 17.27 2.25 0.04 -1.35 16 27 C -0.15 -1.26 10.03 -39.51 -0.40 -1.65 16 28 C -0.08 -0.62 9.67 -39.59 -0.38 -1.01 16 29 C 0.03 0.33 4.91 -3.71 -0.02 0.31 16 30 H 0.05 0.56 7.24 -51.93 -0.38 0.18 16 31 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.09 1.34 8.07 -51.93 -0.42 0.92 16 34 H 0.07 0.81 6.43 -51.93 -0.33 0.48 16 35 H 0.03 0.65 7.13 -51.93 -0.37 0.28 16 36 H 0.04 0.90 6.85 -51.93 -0.36 0.54 16 37 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 38 H 0.06 0.70 7.19 -51.93 -0.37 0.33 16 39 H 0.10 1.28 7.30 -51.93 -0.38 0.91 16 40 H 0.11 1.78 5.85 -51.93 -0.30 1.47 16 41 H 0.03 0.43 8.14 -51.93 -0.42 0.00 16 42 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.14 1.15 7.77 -52.49 -0.41 0.74 16 45 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 46 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 47 H 0.14 0.89 8.04 -52.49 -0.42 0.47 16 48 H 0.04 0.45 8.14 -51.93 -0.42 0.02 16 49 H 0.09 0.87 8.09 -51.93 -0.42 0.45 16 LS Contribution 398.12 15.07 6.00 6.00 Total: -1.00 -33.91 398.12 -9.58 -43.49 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -7.55 Total: 0.28 kcal Atomic # 6 Polarization: 1.35 SS G_CDS: -2.42 Total: -1.07 kcal Atomic # 7 Polarization: -46.36 SS G_CDS: -0.71 Total: -47.07 kcal Atomic # 8 Polarization: -16.71 SS G_CDS: -0.27 Total: -16.98 kcal Atomic # 9 Polarization: -1.39 SS G_CDS: 0.04 Total: -1.35 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.67 Total: 16.69 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -33.91 -9.58 -43.49 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076878644.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.978 kcal (2) G-P(sol) polarization free energy of solvation -33.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds