Wall clock time and date at job start Tue Mar 31 2020 06:01:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.47066 * 2 1 4 4 C 1.50704 * 109.46657 * 240.00345 * 2 1 3 5 5 H 1.07999 * 119.99730 * 245.45202 * 4 2 1 6 6 C 1.37883 * 119.99827 * 65.45731 * 4 2 1 7 7 N 1.31510 * 120.00216 * 9.61394 * 6 4 2 8 8 Si 1.86800 * 119.99523 * 189.61595 * 6 4 2 9 9 H 1.48502 * 109.47311 * 84.99514 * 8 6 4 10 10 H 1.48501 * 109.47042 * 204.99254 * 8 6 4 11 11 H 1.48496 * 109.47302 * 324.99208 * 8 6 4 12 12 N 1.46491 * 109.47408 * 120.00498 * 2 1 3 13 13 C 1.46500 * 120.00112 * 59.99737 * 12 2 1 14 14 C 1.34778 * 120.00039 * 240.00032 * 12 2 1 15 15 O 1.21285 * 119.99896 * 0.02562 * 14 12 2 16 16 C 1.50703 * 120.00281 * 179.97438 * 14 12 2 17 17 H 1.08997 * 115.55642 * 34.30457 * 16 14 12 18 18 C 1.53074 * 117.51325 * 248.60788 * 16 14 12 19 19 C 1.52994 * 117.49898 * 179.97438 * 16 14 12 20 20 H 1.08998 * 117.49844 * 215.00123 * 19 16 14 21 21 C 1.50702 * 117.49908 * 359.97438 * 19 16 14 22 22 C 1.38261 * 119.99865 * 60.17430 * 21 19 16 23 23 C 1.38218 * 120.02330 * 180.25928 * 22 21 19 24 24 C 1.38238 * 120.00726 * 359.75591 * 23 22 21 25 25 C 1.38302 * 119.99068 * 359.97438 * 24 23 22 26 26 Br 1.89102 * 120.01045 * 180.02562 * 25 24 23 27 27 C 1.38196 * 119.99187 * 239.90961 * 21 19 16 28 28 H 1.08995 * 109.47210 * 183.28624 * 1 2 3 29 29 H 1.09005 * 109.46850 * 303.28330 * 1 2 3 30 30 H 1.08997 * 109.47070 * 63.28068 * 1 2 3 31 31 H 0.97001 * 119.99860 * 179.97438 * 7 6 4 32 32 H 1.09002 * 109.46852 * 270.00026 * 13 12 2 33 33 H 1.08997 * 109.47108 * 30.00193 * 13 12 2 34 34 H 1.08998 * 109.47340 * 150.00318 * 13 12 2 35 35 H 1.08996 * 117.49360 * 145.03142 * 18 16 14 36 36 H 1.09002 * 117.50965 * 359.97438 * 18 16 14 37 37 H 1.08005 * 119.98776 * 359.97253 * 22 21 19 38 38 H 1.07997 * 119.99637 * 179.74094 * 23 22 21 39 39 H 1.07998 * 120.00287 * 179.97438 * 24 23 22 40 40 H 1.07995 * 120.01039 * 0.02562 * 27 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.5786 -1.6370 -1.1340 6 6 1.7944 -0.1772 -2.4797 7 7 1.3001 1.0361 -2.5936 8 14 2.1741 -1.1785 -4.0102 9 1 1.0212 -2.0605 -4.3235 10 1 2.4211 -0.2623 -5.1525 11 1 3.3820 -2.0088 -3.7716 12 7 2.0184 -0.6907 1.1960 13 6 1.6645 -2.0932 1.4278 14 6 2.7933 -0.0357 2.0832 15 8 3.0859 1.1256 1.8916 16 6 3.2953 -0.7460 3.3139 17 1 3.5214 -1.8046 3.1865 18 6 2.7322 -0.3014 4.6661 19 6 4.1710 0.0517 4.2822 20 1 4.9732 -0.4821 4.7916 21 6 4.4661 1.4874 3.9319 22 6 3.4299 2.3922 3.7933 23 6 3.6996 3.7079 3.4668 24 6 5.0061 4.1209 3.2836 25 6 6.0434 3.2175 3.4276 26 35 7.8308 3.7819 3.1778 27 6 5.7729 1.9007 3.7546 28 1 -0.3633 -1.0259 0.0589 29 1 -0.3633 0.5640 0.8591 30 1 -0.3633 0.4620 -0.9179 31 1 1.1331 1.4113 -3.4724 32 1 0.7377 -2.1444 1.9992 33 1 1.5296 -2.5969 0.4706 34 1 2.4630 -2.5820 1.9861 35 1 2.5881 -1.0677 5.4277 36 1 1.9990 0.5052 4.6655 37 1 2.4090 2.0697 3.9357 38 1 2.8896 4.4133 3.3546 39 1 5.2168 5.1488 3.0281 40 1 6.5825 1.1948 3.8666 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078420751.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:15 Heat of formation + Delta-G solvation = 29.310338 kcal Electronic energy + Delta-G solvation = -23123.120664 eV Core-core repulsion = 19757.411363 eV Total energy + Delta-G solvation = -3365.709301 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 351.058 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.21710 -38.49382 -36.39485 -35.05771 -32.81501 -31.93411 -30.74906 -29.59113 -28.80703 -26.11682 -25.22322 -24.31233 -23.64653 -22.28859 -20.86116 -19.94154 -18.20256 -17.22814 -16.41482 -16.36158 -15.33963 -15.11058 -14.72101 -14.49238 -14.25360 -13.92332 -13.46464 -13.20337 -13.08797 -12.56358 -12.42453 -12.35454 -11.91495 -11.77928 -11.54090 -11.24197 -11.07769 -11.02121 -10.89399 -10.82535 -10.68511 -10.40325 -10.27425 -10.23321 -10.17265 -10.10647 -9.24955 -9.03489 -8.53210 -8.41827 -7.89275 -7.56559 -6.09798 -4.14425 1.45203 1.58052 1.82971 3.09174 3.26102 3.33370 3.35131 3.82328 3.91049 4.18669 4.39549 4.65473 4.88550 4.98252 5.03016 5.13159 5.21927 5.25258 5.32374 5.49528 5.65643 5.71882 5.75774 5.87091 6.00255 6.04017 6.05441 6.17600 6.35166 6.44286 6.63935 6.64991 6.73011 6.82885 6.96847 7.12178 7.33676 7.53716 7.68774 7.92011 8.16538 8.52900 8.84640 9.07914 9.50761 10.97514 Molecular weight = 351.06amu Principal moments of inertia in cm(-1) A = 0.011903 B = 0.003441 C = 0.002964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2351.748288 B = 8135.732708 C = 9443.287073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.257 3.743 3 H 0.070 0.930 4 C -0.530 4.530 5 H 0.059 0.941 6 C 0.068 3.932 7 N -0.884 5.884 8 Si 0.893 3.107 9 H -0.279 1.279 10 H -0.286 1.286 11 H -0.275 1.275 12 N -0.587 5.587 13 C 0.084 3.916 14 C 0.526 3.474 15 O -0.533 6.533 16 C -0.175 4.175 17 H 0.124 0.876 18 C -0.149 4.149 19 C -0.090 4.090 20 H 0.118 0.882 21 C -0.035 4.035 22 C -0.027 4.027 23 C -0.121 4.121 24 C -0.091 4.091 25 C -0.097 4.097 26 Br -0.071 7.071 27 C -0.085 4.085 28 H 0.031 0.969 29 H 0.014 0.986 30 H 0.075 0.925 31 H 0.263 0.737 32 H 0.042 0.958 33 H 0.078 0.922 34 H 0.054 0.946 35 H 0.105 0.895 36 H 0.102 0.898 37 H 0.118 0.882 38 H 0.124 0.876 39 H 0.124 0.876 40 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.629 0.580 16.731 18.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.157 3.843 3 H 0.088 0.912 4 C -0.568 4.568 5 H 0.077 0.923 6 C -0.135 4.135 7 N -0.521 5.521 8 Si 0.721 3.279 9 H -0.205 1.205 10 H -0.212 1.212 11 H -0.200 1.200 12 N -0.318 5.318 13 C -0.061 4.061 14 C 0.312 3.688 15 O -0.411 6.411 16 C -0.196 4.196 17 H 0.142 0.858 18 C -0.186 4.186 19 C -0.108 4.108 20 H 0.136 0.864 21 C -0.036 4.036 22 C -0.046 4.046 23 C -0.140 4.140 24 C -0.111 4.111 25 C -0.176 4.176 26 Br 0.014 6.986 27 C -0.105 4.105 28 H 0.050 0.950 29 H 0.033 0.967 30 H 0.094 0.906 31 H 0.073 0.927 32 H 0.060 0.940 33 H 0.097 0.903 34 H 0.072 0.928 35 H 0.124 0.876 36 H 0.120 0.880 37 H 0.136 0.864 38 H 0.142 0.858 39 H 0.142 0.858 40 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 7.370 1.539 16.343 17.994 hybrid contribution -0.284 -0.966 -1.166 1.541 sum 7.086 0.574 15.177 16.759 Atomic orbital electron populations 1.22008 0.98692 0.98796 1.00303 1.18924 0.90261 0.95102 0.79978 0.91202 1.21263 1.36561 1.08576 0.90440 0.92304 1.24887 0.95113 0.94596 0.98924 1.69967 1.44361 1.13681 1.24079 0.86590 0.78675 0.80059 0.82572 1.20484 1.21179 1.19987 1.48190 1.48716 1.11516 1.23362 1.21611 0.98762 0.83540 1.02137 1.19457 0.79160 0.86736 0.83414 1.90710 1.58044 1.16508 1.75854 1.22517 1.05453 1.00381 0.91252 0.85835 1.23099 0.96216 1.03408 0.95914 1.21009 0.94592 0.93176 1.02036 0.86399 1.18746 0.92564 0.92956 0.99315 1.20849 0.98470 0.92196 0.93070 1.20948 0.95777 0.96357 1.00873 1.20937 0.92009 0.98858 0.99249 1.21453 0.89919 0.96431 1.09835 1.96615 1.14731 1.90732 1.96517 1.20649 0.96435 0.93754 0.99669 0.95002 0.96666 0.90642 0.92680 0.93954 0.90328 0.92773 0.87632 0.87996 0.86375 0.85766 0.85827 0.85875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.22 9.12 37.16 0.34 -2.88 16 2 C 0.26 6.43 2.50 -69.08 -0.17 6.26 16 3 H 0.07 2.05 6.84 -51.93 -0.36 1.70 16 4 C -0.53 -14.22 8.01 -34.44 -0.28 -14.50 16 5 H 0.06 1.56 7.16 -52.49 -0.38 1.18 16 6 C 0.07 1.86 5.17 -17.82 -0.09 1.77 16 7 N -0.88 -25.27 12.16 55.43 0.67 -24.60 16 8 Si 0.89 21.02 29.55 -169.99 -5.02 16.00 16 9 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 10 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 12 N -0.59 -12.07 2.75 -175.26 -0.48 -12.56 16 13 C 0.08 1.35 9.19 59.85 0.55 1.90 16 14 C 0.53 10.27 7.33 -10.98 -0.08 10.19 16 15 O -0.53 -12.06 11.04 5.55 0.06 -11.99 16 16 C -0.17 -2.45 5.29 -91.73 -0.49 -2.94 16 17 H 0.12 1.48 6.44 -51.93 -0.33 1.15 16 18 C -0.15 -1.66 9.58 -26.67 -0.26 -1.91 16 19 C -0.09 -1.13 6.04 -91.75 -0.55 -1.68 16 20 H 0.12 1.19 8.14 -51.93 -0.42 0.77 16 21 C -0.03 -0.53 4.36 -104.63 -0.46 -0.98 16 22 C -0.03 -0.43 6.18 -39.58 -0.24 -0.68 16 23 C -0.12 -1.84 10.05 -39.59 -0.40 -2.23 16 24 C -0.09 -1.35 9.79 -39.56 -0.39 -1.74 16 25 C -0.10 -1.47 6.22 -39.52 -0.25 -1.72 16 26 Br -0.07 -0.95 33.70 -68.01 -2.29 -3.24 16 27 C -0.09 -1.28 9.48 -39.56 -0.37 -1.65 16 28 H 0.03 0.67 7.56 -51.93 -0.39 0.27 16 29 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.07 1.91 6.84 -51.93 -0.36 1.56 16 31 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 32 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.08 1.36 6.92 -51.93 -0.36 1.00 16 34 H 0.05 0.71 6.00 -51.93 -0.31 0.40 16 35 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.10 1.20 6.18 -51.93 -0.32 0.88 16 37 H 0.12 1.80 5.79 -52.48 -0.30 1.50 16 38 H 0.12 1.65 8.06 -52.49 -0.42 1.23 16 39 H 0.12 1.61 8.06 -52.49 -0.42 1.19 16 40 H 0.12 1.63 8.06 -52.49 -0.42 1.21 16 LS Contribution 343.59 15.07 5.18 5.18 Total: -1.00 -30.79 343.59 -10.22 -41.01 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -5.20 Total: 3.01 kcal Atomic # 6 Polarization: -9.67 SS G_CDS: -3.13 Total: -12.81 kcal Atomic # 7 Polarization: -37.35 SS G_CDS: 0.19 Total: -37.15 kcal Atomic # 8 Polarization: -12.06 SS G_CDS: 0.06 Total: -11.99 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Atomic # 35 Polarization: -0.95 SS G_CDS: -2.29 Total: -3.24 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.79 -10.22 -41.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078420751.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.324 kcal (2) G-P(sol) polarization free energy of solvation -30.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.014 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds