Wall clock time and date at job start Tue Mar 31 2020 05:41:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47509 * 2 1 4 4 C 1.53013 * 109.47073 * 240.00244 * 2 1 3 5 5 C 1.50701 * 109.47378 * 120.00738 * 2 1 3 6 6 O 1.21278 * 119.99876 * 359.97438 * 5 2 1 7 7 N 1.34774 * 120.00143 * 180.02562 * 5 2 1 8 8 C 1.46500 * 119.99707 * 179.97438 * 7 5 2 9 9 C 1.53001 * 109.46941 * 179.97438 * 8 7 5 10 10 C 1.50701 * 109.47378 * 180.02562 * 9 8 7 11 11 O 1.21297 * 119.99912 * 359.97438 * 10 9 8 12 12 N 1.34770 * 120.00505 * 180.02562 * 10 9 8 13 13 C 1.46505 * 119.99822 * 4.73018 * 12 10 9 14 14 C 1.50700 * 109.47457 * 270.00654 * 13 12 10 15 15 H 1.08002 * 119.99601 * 359.97438 * 14 13 12 16 16 C 1.37872 * 120.00123 * 179.97438 * 14 13 12 17 17 N 1.31514 * 119.99966 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 120.00078 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.46698 * 90.00122 * 18 16 14 20 20 H 1.48494 * 109.47057 * 210.00394 * 18 16 14 21 21 H 1.48502 * 109.46944 * 330.00447 * 18 16 14 22 22 C 1.40029 * 120.00429 * 184.73644 * 12 10 9 23 23 C 1.38849 * 120.04594 * 67.63838 * 22 12 10 24 24 C 1.38112 * 119.95571 * 179.72453 * 23 22 12 25 25 C 1.38469 * 120.04443 * 0.55038 * 24 23 22 26 26 F 1.35105 * 119.95548 * 179.70138 * 25 24 23 27 27 C 1.38476 * 120.09159 * 359.72205 * 25 24 23 28 28 C 1.38115 * 120.04287 * 0.02562 * 27 25 24 29 29 H 1.08996 * 109.46776 * 299.99988 * 1 2 3 30 30 H 1.08995 * 109.46872 * 59.99935 * 1 2 3 31 31 H 1.09003 * 109.47296 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47395 * 180.02562 * 3 2 1 33 33 H 1.09002 * 109.47135 * 300.00313 * 3 2 1 34 34 H 1.08999 * 109.46597 * 60.00177 * 3 2 1 35 35 H 1.08997 * 109.46784 * 299.99986 * 4 2 1 36 36 H 1.08997 * 109.46688 * 60.00235 * 4 2 1 37 37 H 1.08998 * 109.46847 * 180.02562 * 4 2 1 38 38 H 0.96996 * 120.00132 * 359.97438 * 7 5 2 39 39 H 1.09003 * 109.47131 * 59.99623 * 8 7 5 40 40 H 1.08996 * 109.47084 * 299.99175 * 8 7 5 41 41 H 1.08997 * 109.47304 * 59.99531 * 9 8 7 42 42 H 1.09008 * 109.46888 * 299.99265 * 9 8 7 43 43 H 1.08996 * 109.46793 * 30.00439 * 13 12 10 44 44 H 1.09004 * 109.47073 * 150.00226 * 13 12 10 45 45 H 0.97005 * 119.99892 * 179.97438 * 17 16 14 46 46 H 1.08004 * 120.02235 * 359.97438 * 23 22 12 47 47 H 1.08000 * 119.97608 * 180.24655 * 24 23 22 48 48 H 1.08003 * 119.98106 * 179.97438 * 27 25 24 49 49 H 1.07998 * 120.02353 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2494 5 6 2.0324 -0.7106 1.2304 6 8 1.2443 -1.1712 2.0289 7 7 3.3575 -0.8333 1.4439 8 6 3.8458 -1.5235 2.6402 9 6 5.3758 -1.5236 2.6402 10 6 5.8782 -2.2342 3.8705 11 8 5.0900 -2.6949 4.6692 12 7 7.2032 -2.3571 4.0840 13 6 8.1544 -1.7113 3.1760 14 6 8.5024 -2.6582 2.0565 15 1 8.0596 -3.6427 2.0247 16 6 9.3859 -2.2676 1.0728 17 7 9.9255 -1.0688 1.1117 18 14 9.8178 -3.4416 -0.3146 19 1 8.8672 -3.2498 -1.4392 20 1 11.2002 -3.1675 -0.7826 21 1 9.7293 -4.8407 0.1753 22 6 7.6708 -3.1020 5.1736 23 6 7.4891 -4.4782 5.2041 24 6 7.9561 -5.2119 6.2770 25 6 8.5950 -4.5745 7.3272 26 9 9.0457 -5.2932 8.3787 27 6 8.7722 -3.2014 7.3014 28 6 8.3113 -2.4647 6.2279 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 3.1301 1.4424 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6768 1.9562 0.8900 35 1 1.6767 -1.7489 -1.2494 36 1 1.6767 -0.2073 -2.1393 37 1 3.1300 -0.7216 -1.2491 38 1 3.9878 -0.4646 0.8054 39 1 3.4826 -2.5513 2.6404 40 1 3.4822 -1.0096 3.5300 41 1 5.7392 -0.4960 2.6398 42 1 5.7390 -2.0379 1.7503 43 1 7.7056 -0.8084 2.7619 44 1 9.0591 -1.4487 3.7243 45 1 10.5474 -0.7942 0.4198 46 1 6.9865 -4.9752 4.3874 47 1 7.8185 -6.2829 6.2992 48 1 9.2704 -2.7060 8.1217 49 1 8.4493 -1.3938 6.2083 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078778733.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:53 Heat of formation + Delta-G solvation = -109.570523 kcal Electronic energy + Delta-G solvation = -30831.786590 eV Core-core repulsion = 26479.698030 eV Total energy + Delta-G solvation = -4352.088560 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 350.179 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -48.66119 -40.25574 -39.89641 -38.04764 -35.77510 -35.19254 -34.96638 -32.76646 -30.94462 -30.89664 -29.06301 -27.55164 -27.32034 -27.13493 -24.68777 -23.38779 -22.63641 -22.46838 -21.56199 -19.70662 -18.66987 -17.47126 -16.97311 -16.93883 -16.74948 -16.17837 -15.94966 -15.65805 -15.47008 -15.30112 -14.81409 -14.49637 -14.28786 -14.13189 -13.86857 -13.80554 -13.34276 -13.30396 -13.20951 -12.72881 -12.55061 -12.53948 -12.37968 -12.27949 -12.05014 -11.95184 -11.89594 -11.81984 -11.44240 -11.22541 -11.16087 -11.09876 -11.08905 -10.89635 -10.85736 -10.35132 -9.98905 -9.68631 -9.37887 -8.96251 -8.85079 -8.72209 -8.63904 -7.78821 -6.34184 -4.42354 1.38758 1.51045 2.70465 3.05203 3.11961 3.12919 3.21085 3.24858 3.69304 3.87037 4.20772 4.49020 4.50371 4.58911 4.69447 4.98367 4.99664 5.00634 5.06684 5.15900 5.24573 5.34716 5.37947 5.40822 5.51187 5.52379 5.62242 5.64508 5.68220 5.73363 5.80428 5.86149 5.90210 6.01722 6.12170 6.12424 6.15528 6.25072 6.34549 6.41778 6.52201 6.60114 6.71064 6.94683 7.03867 7.42661 7.56029 7.60138 7.84845 7.99005 8.28734 8.58866 8.74942 9.26155 10.72560 Molecular weight = 350.18amu Principal moments of inertia in cm(-1) A = 0.008530 B = 0.003042 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3281.791454 B = 9202.517620 C =11619.952571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.087 4.087 3 C -0.141 4.141 4 C -0.142 4.142 5 C 0.520 3.480 6 O -0.541 6.541 7 N -0.727 5.727 8 C 0.135 3.865 9 C -0.146 4.146 10 C 0.527 3.473 11 O -0.554 6.554 12 N -0.561 5.561 13 C 0.238 3.762 14 C -0.542 4.542 15 H 0.062 0.938 16 C 0.069 3.931 17 N -0.889 5.889 18 Si 0.896 3.104 19 H -0.278 1.278 20 H -0.284 1.284 21 H -0.272 1.272 22 C 0.167 3.833 23 C -0.079 4.079 24 C -0.144 4.144 25 C 0.080 3.920 26 F -0.147 7.147 27 C -0.144 4.144 28 C -0.096 4.096 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.067 0.933 37 H 0.063 0.937 38 H 0.401 0.599 39 H 0.073 0.927 40 H 0.072 0.928 41 H 0.100 0.900 42 H 0.114 0.886 43 H 0.044 0.956 44 H 0.040 0.960 45 H 0.267 0.733 46 H 0.131 0.869 47 H 0.133 0.867 48 H 0.134 0.866 49 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.391 3.083 -1.068 9.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.091 4.091 3 C -0.199 4.199 4 C -0.199 4.199 5 C 0.306 3.694 6 O -0.417 6.417 7 N -0.379 5.379 8 C 0.011 3.989 9 C -0.186 4.186 10 C 0.316 3.684 11 O -0.433 6.433 12 N -0.289 5.289 13 C 0.120 3.880 14 C -0.580 4.580 15 H 0.081 0.919 16 C -0.135 4.135 17 N -0.526 5.526 18 Si 0.724 3.276 19 H -0.204 1.204 20 H -0.210 1.210 21 H -0.197 1.197 22 C 0.076 3.924 23 C -0.098 4.098 24 C -0.163 4.163 25 C 0.061 3.939 26 F -0.125 7.125 27 C -0.164 4.164 28 C -0.116 4.116 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.086 0.914 37 H 0.082 0.918 38 H 0.236 0.764 39 H 0.092 0.908 40 H 0.090 0.910 41 H 0.118 0.882 42 H 0.132 0.868 43 H 0.062 0.938 44 H 0.058 0.942 45 H 0.077 0.923 46 H 0.148 0.852 47 H 0.151 0.849 48 H 0.152 0.848 49 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -9.212 2.635 -0.153 9.582 hybrid contribution 1.094 -0.526 -1.075 1.621 sum -8.118 2.109 -1.228 8.477 Atomic orbital electron populations 1.21648 0.92085 1.02793 1.01874 1.20826 0.97974 0.96485 0.93774 1.21875 1.01488 0.93713 1.02788 1.21882 1.01554 1.00604 0.95893 1.20533 0.82122 0.79507 0.87221 1.90698 1.55367 1.48590 1.47077 1.46039 1.07196 1.58850 1.25779 1.21074 0.92461 0.98138 0.87181 1.21760 0.94831 1.03192 0.98803 1.20303 0.81674 0.79725 0.86692 1.90689 1.55235 1.50250 1.47154 1.45973 1.06643 1.50222 1.26026 1.19618 0.87592 0.93174 0.87617 1.21413 1.27283 1.01055 1.08248 0.91939 1.24905 0.95292 0.95288 0.98010 1.69908 1.29830 1.18333 1.34568 0.86512 0.77940 0.81289 0.81899 1.20387 1.20979 1.19720 1.17589 0.96565 0.90256 0.88010 1.21102 0.98204 0.92908 0.97618 1.20931 1.00981 1.00661 0.93746 1.17629 1.00645 0.89751 0.85907 1.91457 1.87421 1.78164 1.55495 1.20891 1.03285 0.92059 1.00121 1.21072 0.98382 1.00335 0.91783 0.91985 0.92162 0.91977 0.91862 0.91408 0.92045 0.92019 0.91407 0.91812 0.76410 0.90848 0.90961 0.88223 0.86774 0.93777 0.94168 0.92338 0.85156 0.84895 0.84829 0.84920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.23 7.76 37.16 0.29 -0.94 16 2 C -0.09 -0.87 0.87 -155.65 -0.14 -1.00 16 3 C -0.14 -1.15 8.37 37.16 0.31 -0.84 16 4 C -0.14 -1.20 8.37 37.16 0.31 -0.89 16 5 C 0.52 7.09 6.48 -10.99 -0.07 7.02 16 6 O -0.54 -9.58 15.98 5.56 0.09 -9.49 16 7 N -0.73 -9.18 5.34 -60.29 -0.32 -9.50 16 8 C 0.14 2.04 4.96 -4.04 -0.02 2.02 16 9 C -0.15 -2.26 4.48 -27.88 -0.12 -2.39 16 10 C 0.53 9.94 7.52 -10.99 -0.08 9.85 16 11 O -0.55 -11.69 15.73 5.54 0.09 -11.60 16 12 N -0.56 -10.90 2.51 -114.71 -0.29 -11.19 16 13 C 0.24 5.09 4.88 -5.19 -0.03 5.07 16 14 C -0.54 -12.81 9.16 -34.44 -0.32 -13.12 16 15 H 0.06 1.51 7.81 -52.49 -0.41 1.10 16 16 C 0.07 1.68 5.46 -17.82 -0.10 1.58 16 17 N -0.89 -22.62 13.29 55.43 0.74 -21.88 16 18 Si 0.90 19.21 29.54 -169.99 -5.02 14.19 16 19 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 20 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 21 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 22 C 0.17 3.13 4.76 -83.66 -0.40 2.74 16 23 C -0.08 -1.39 9.53 -39.40 -0.38 -1.77 16 24 C -0.14 -2.25 10.02 -39.54 -0.40 -2.64 16 25 C 0.08 1.24 7.30 -39.41 -0.29 0.95 16 26 F -0.15 -2.21 17.27 2.25 0.04 -2.17 16 27 C -0.14 -2.15 10.02 -39.54 -0.40 -2.55 16 28 C -0.10 -1.59 9.69 -39.40 -0.38 -1.97 16 29 H 0.06 0.66 8.10 -51.93 -0.42 0.24 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.66 8.10 -51.93 -0.42 0.24 16 32 H 0.06 0.48 7.56 -51.93 -0.39 0.09 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.06 0.51 7.56 -51.93 -0.39 0.12 16 38 H 0.40 4.12 7.31 -40.82 -0.30 3.82 16 39 H 0.07 1.24 8.10 -51.93 -0.42 0.82 16 40 H 0.07 1.19 8.10 -51.93 -0.42 0.77 16 41 H 0.10 1.42 7.26 -51.93 -0.38 1.04 16 42 H 0.11 1.81 7.91 -51.92 -0.41 1.40 16 43 H 0.04 0.93 6.47 -51.93 -0.34 0.60 16 44 H 0.04 0.92 7.86 -51.93 -0.41 0.52 16 45 H 0.27 6.51 8.31 -40.82 -0.34 6.17 16 46 H 0.13 2.29 8.06 -52.48 -0.42 1.87 16 47 H 0.13 1.75 8.06 -52.49 -0.42 1.32 16 48 H 0.13 1.63 8.06 -52.48 -0.42 1.20 16 49 H 0.13 2.01 8.06 -52.49 -0.42 1.59 16 LS Contribution 414.02 15.07 6.24 6.24 Total: -1.00 -29.45 414.02 -8.29 -37.73 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: -7.65 Total: 6.55 kcal Atomic # 6 Polarization: 3.31 SS G_CDS: -2.20 Total: 1.12 kcal Atomic # 7 Polarization: -42.69 SS G_CDS: 0.13 Total: -42.56 kcal Atomic # 8 Polarization: -21.27 SS G_CDS: 0.18 Total: -21.09 kcal Atomic # 9 Polarization: -2.21 SS G_CDS: 0.04 Total: -2.17 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -5.02 Total: 14.19 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -29.45 -8.29 -37.73 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078778733.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.839 kcal (2) G-P(sol) polarization free energy of solvation -29.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds