Wall clock time and date at job start Tue Mar 31 2020 06:52:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30271 * 126.28266 * 2 1 4 4 N 1.28671 * 109.38066 * 179.73059 * 3 2 1 5 5 C 1.30282 * 109.37794 * 0.44150 * 4 3 2 6 6 C 1.50697 * 126.28214 * 179.82451 * 5 4 3 7 7 N 1.46903 * 109.46885 * 89.69100 * 6 5 4 8 8 C 1.46903 * 111.00163 * 293.95373 * 7 6 5 9 9 C 1.46904 * 111.00177 * 170.00110 * 7 6 5 10 10 H 1.08995 * 110.87405 * 62.39011 * 9 7 6 11 11 C 1.55141 * 110.98654 * 298.54693 * 9 7 6 12 12 C 1.54325 * 103.01679 * 206.21596 * 11 9 7 13 13 N 1.47434 * 107.23276 * 22.28467 * 12 11 9 14 14 C 1.46902 * 111.00091 * 123.25545 * 13 12 11 15 15 C 1.50706 * 109.46577 * 69.87481 * 14 13 12 16 16 O 1.21274 * 120.00042 * 359.72339 * 15 14 13 17 17 N 1.34777 * 119.99766 * 179.97438 * 15 14 13 18 18 C 1.46504 * 119.99854 * 0.02562 * 17 15 14 19 19 C 1.46496 * 120.00266 * 179.97438 * 17 15 14 20 20 C 1.50703 * 109.47077 * 90.00076 * 19 17 15 21 21 H 1.08005 * 119.99703 * 0.02562 * 20 19 17 22 22 C 1.37872 * 120.00292 * 180.02562 * 20 19 17 23 23 N 1.31518 * 119.99761 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 120.00272 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47148 * 89.99653 * 24 22 20 26 26 H 1.48496 * 109.47010 * 210.00013 * 24 22 20 27 27 H 1.48497 * 109.46708 * 330.00096 * 24 22 20 28 28 C 1.47846 * 108.56752 * 0.98953 * 13 12 11 29 29 O 1.34363 * 107.43498 * 359.56382 * 5 4 3 30 30 H 1.09000 * 109.47286 * 270.00319 * 1 2 3 31 31 H 1.09007 * 109.46785 * 30.00340 * 1 2 3 32 32 H 1.09001 * 109.47053 * 149.99841 * 1 2 3 33 33 H 1.09001 * 109.47335 * 329.69737 * 6 5 4 34 34 H 1.08994 * 109.47569 * 209.68631 * 6 5 4 35 35 H 1.08994 * 109.46976 * 296.04526 * 8 7 6 36 36 H 1.08998 * 109.46865 * 56.04911 * 8 7 6 37 37 H 1.09001 * 109.47120 * 176.04453 * 8 7 6 38 38 H 1.09002 * 110.70329 * 87.83636 * 11 9 7 39 39 H 1.08997 * 110.70931 * 324.59756 * 11 9 7 40 40 H 1.09001 * 109.88240 * 262.88007 * 12 11 9 41 41 H 1.08996 * 110.02146 * 141.76946 * 12 11 9 42 42 H 1.09000 * 109.47263 * 309.87681 * 14 13 12 43 43 H 1.09001 * 109.47582 * 189.86960 * 14 13 12 44 44 H 1.09002 * 109.47335 * 89.99996 * 18 17 15 45 45 H 1.09001 * 109.47076 * 209.99400 * 18 17 15 46 46 H 1.08996 * 109.47068 * 329.99428 * 18 17 15 47 47 H 1.08997 * 109.47682 * 210.00272 * 19 17 15 48 48 H 1.09004 * 109.47271 * 330.00368 * 19 17 15 49 49 H 0.96999 * 119.99754 * 180.02562 * 23 22 20 50 50 H 1.09003 * 110.37517 * 94.73798 * 28 13 12 51 51 H 1.09007 * 110.37420 * 217.07073 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2779 1.0501 0.0000 4 7 3.5090 0.6760 0.0057 5 6 3.5654 -0.6256 0.0001 6 6 4.8176 -1.4640 0.0001 7 7 5.2244 -1.7364 1.3851 8 6 5.6314 -0.5005 2.0670 9 6 6.2959 -2.7403 1.4313 10 1 7.1885 -2.3795 0.9203 11 6 5.8193 -4.0895 0.8318 12 6 6.7179 -5.1228 1.5435 13 7 7.1968 -4.4996 2.7909 14 6 6.8362 -5.3146 3.9587 15 6 7.6477 -6.5844 3.9549 16 8 8.4440 -6.7925 3.0641 17 7 7.4849 -7.4911 4.9387 18 6 6.5186 -7.2425 6.0114 19 6 8.2733 -8.7258 4.9347 20 6 9.5560 -8.5052 5.6945 21 1 9.7629 -7.5417 6.1364 22 6 10.4653 -9.5333 5.8254 23 7 10.2130 -10.7067 5.2877 24 14 12.0549 -9.2600 6.7678 25 1 11.8455 -9.5948 8.1993 26 1 13.1190 -10.1304 6.2063 27 1 12.4637 -7.8375 6.6467 28 6 6.6173 -3.1432 2.8920 29 8 2.3021 -1.0832 0.0001 30 1 -0.3634 0.0001 1.0276 31 1 -0.3633 0.8900 -0.5139 32 1 -0.3633 -0.8900 -0.5139 33 1 5.6147 -0.9266 -0.5137 34 1 4.6244 -2.4057 -0.5136 35 1 6.5157 -0.0906 1.5791 36 1 4.8199 0.2256 2.0180 37 1 5.8604 -0.7194 3.1099 38 1 5.9845 -4.1123 -0.2454 39 1 4.7695 -4.2659 1.0657 40 1 7.5654 -5.3778 0.9072 41 1 6.1441 -6.0204 1.7739 42 1 5.7753 -5.5612 3.9161 43 1 7.0426 -4.7542 4.8706 44 1 5.5474 -7.6471 5.7266 45 1 6.8595 -7.7263 6.9268 46 1 6.4301 -6.1691 6.1790 47 1 7.7021 -9.5233 5.4100 48 1 8.5036 -9.0067 3.9070 49 1 10.8526 -11.4301 5.3801 50 1 5.7058 -3.1635 3.4895 51 1 7.3409 -2.4528 3.3257 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078891397.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:17 Heat of formation + Delta-G solvation = 35.897955 kcal Electronic energy + Delta-G solvation = -31032.977340 eV Core-core repulsion = 26777.523912 eV Total energy + Delta-G solvation = -4255.453428 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 351.206 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -44.60908 -39.96113 -38.66449 -36.74913 -36.52986 -34.69378 -33.46350 -32.62476 -31.54125 -30.27308 -28.60445 -28.02534 -27.56342 -26.45650 -25.45069 -24.37620 -23.08840 -22.58534 -22.45913 -20.85287 -20.55507 -18.34799 -17.89139 -17.48128 -16.84557 -16.46984 -16.42764 -16.17759 -15.51718 -15.47304 -15.19605 -14.89116 -14.66548 -14.41649 -13.98238 -13.74123 -13.58015 -13.46295 -13.28541 -13.18370 -13.04905 -12.77398 -12.51526 -12.39432 -12.24066 -12.18317 -12.16025 -11.92376 -11.77797 -11.48398 -11.33443 -11.31322 -11.17579 -11.15641 -10.89692 -10.82427 -10.54972 -10.12967 -9.94556 -9.59461 -8.96621 -8.87482 -8.41473 -8.17929 -7.59700 -6.02149 -4.06586 0.70802 1.80531 1.95787 3.16527 3.31634 3.38231 3.41847 3.46810 3.50458 3.81192 3.95330 4.12059 4.27275 4.41703 4.48660 4.50272 4.64090 4.73061 4.78613 4.89277 4.92608 5.00461 5.05802 5.09658 5.16906 5.21551 5.22231 5.32667 5.33199 5.34458 5.42608 5.46609 5.54298 5.59871 5.63409 5.71943 5.74943 5.86690 5.92746 6.20520 6.22723 6.34259 6.49725 6.90315 7.00160 7.14901 7.46484 7.58234 7.90060 7.94834 8.26180 8.46090 8.93789 9.16920 9.58606 11.05855 Molecular weight = 351.21amu Principal moments of inertia in cm(-1) A = 0.026011 B = 0.001719 C = 0.001691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.194312 B =16281.023766 C =16556.981897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.161 3.839 3 N -0.291 5.291 4 N -0.283 5.283 5 C 0.178 3.822 6 C 0.146 3.854 7 N -0.532 5.532 8 C 0.017 3.983 9 C 0.075 3.925 10 H 0.069 0.931 11 C -0.140 4.140 12 C 0.056 3.944 13 N -0.508 5.508 14 C 0.034 3.966 15 C 0.505 3.495 16 O -0.523 6.523 17 N -0.607 5.607 18 C 0.084 3.916 19 C 0.247 3.753 20 C -0.525 4.525 21 H 0.057 0.943 22 C 0.060 3.940 23 N -0.896 5.896 24 Si 0.898 3.102 25 H -0.281 1.281 26 H -0.285 1.285 27 H -0.274 1.274 28 C 0.055 3.945 29 O -0.217 6.217 30 H 0.100 0.900 31 H 0.106 0.894 32 H 0.093 0.907 33 H 0.088 0.912 34 H 0.111 0.889 35 H 0.037 0.963 36 H 0.071 0.929 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.077 0.923 40 H 0.086 0.914 41 H 0.057 0.943 42 H 0.057 0.943 43 H 0.096 0.904 44 H 0.042 0.958 45 H 0.074 0.926 46 H 0.055 0.945 47 H 0.031 0.969 48 H 0.043 0.957 49 H 0.263 0.737 50 H 0.057 0.943 51 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.278 20.222 -9.512 30.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.050 4.050 3 N -0.139 5.139 4 N -0.131 5.131 5 C -0.034 4.034 6 C 0.017 3.983 7 N -0.257 5.257 8 C -0.131 4.131 9 C -0.033 4.033 10 H 0.087 0.913 11 C -0.178 4.178 12 C -0.072 4.072 13 N -0.232 5.232 14 C -0.097 4.097 15 C 0.290 3.710 16 O -0.398 6.398 17 N -0.340 5.340 18 C -0.060 4.060 19 C 0.128 3.872 20 C -0.564 4.564 21 H 0.075 0.925 22 C -0.142 4.142 23 N -0.535 5.535 24 Si 0.726 3.274 25 H -0.207 1.207 26 H -0.211 1.211 27 H -0.199 1.199 28 C -0.074 4.074 29 O -0.096 6.096 30 H 0.118 0.882 31 H 0.125 0.875 32 H 0.112 0.888 33 H 0.106 0.894 34 H 0.129 0.871 35 H 0.056 0.944 36 H 0.089 0.911 37 H 0.096 0.904 38 H 0.093 0.907 39 H 0.096 0.904 40 H 0.105 0.895 41 H 0.075 0.925 42 H 0.075 0.925 43 H 0.114 0.886 44 H 0.061 0.939 45 H 0.092 0.908 46 H 0.073 0.927 47 H 0.049 0.951 48 H 0.061 0.939 49 H 0.072 0.928 50 H 0.076 0.924 51 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -19.251 20.959 -9.760 30.086 hybrid contribution 0.260 -0.850 0.393 0.971 sum -18.992 20.109 -9.367 29.203 Atomic orbital electron populations 1.20373 0.80156 1.05733 1.05391 1.28057 0.97929 0.79655 0.99309 1.74402 0.96041 1.25636 1.17797 1.74408 1.12382 1.09199 1.17062 1.27757 0.85175 0.91285 0.99175 1.20479 0.87328 0.98355 0.92147 1.61960 1.39504 1.11174 1.13111 1.22532 1.00253 0.90674 0.99630 1.22822 0.91711 0.91272 0.97529 0.91331 1.22976 1.00681 0.93784 1.00397 1.22727 0.97776 0.95566 0.91139 1.63266 1.57218 1.01178 1.01577 1.22252 0.97694 0.94689 0.95066 1.20119 0.83829 0.84344 0.82724 1.90663 1.35913 1.76886 1.36360 1.48164 1.40184 1.21996 1.23693 1.21617 0.91940 1.00331 0.92119 1.19257 0.89718 0.79496 0.98761 1.21448 1.03335 0.97706 1.33862 0.92468 1.24938 0.98346 0.95042 0.95838 1.69935 1.36438 1.02374 1.44735 0.86495 0.83039 0.78235 0.79655 1.20695 1.21104 1.19871 1.23009 0.98397 0.90902 0.95055 1.84803 1.17477 1.38159 1.69122 0.88181 0.87526 0.88796 0.89432 0.87101 0.94390 0.91073 0.90421 0.90658 0.90419 0.89532 0.92478 0.92461 0.88579 0.93922 0.90757 0.92679 0.95126 0.93885 0.92770 0.92449 0.90053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.19 10.51 36.01 0.38 0.19 16 2 C 0.16 1.36 8.48 -12.94 -0.11 1.25 16 3 N -0.29 -3.25 12.22 32.55 0.40 -2.85 16 4 N -0.28 -3.25 11.38 32.55 0.37 -2.88 16 5 C 0.18 1.72 7.12 -12.94 -0.09 1.63 16 6 C 0.15 1.10 5.47 -4.98 -0.03 1.07 16 7 N -0.53 -4.52 4.65 -233.76 -1.09 -5.60 16 8 C 0.02 0.14 9.20 60.07 0.55 0.69 16 9 C 0.07 0.68 2.70 -65.58 -0.18 0.50 16 10 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 11 C -0.14 -1.30 5.31 -24.90 -0.13 -1.43 16 12 C 0.06 0.74 5.64 -2.84 -0.02 0.72 16 13 N -0.51 -7.26 4.85 -232.69 -1.13 -8.39 16 14 C 0.03 0.51 3.58 -4.97 -0.02 0.50 16 15 C 0.50 10.44 7.32 -10.98 -0.08 10.36 16 16 O -0.52 -13.10 15.11 5.56 0.08 -13.02 16 17 N -0.61 -12.85 2.86 -182.95 -0.52 -13.37 16 18 C 0.08 1.31 10.24 59.85 0.61 1.93 16 19 C 0.25 6.49 5.16 -5.19 -0.03 6.47 16 20 C -0.52 -15.02 9.39 -34.44 -0.32 -15.34 16 21 H 0.06 1.64 7.81 -52.48 -0.41 1.23 16 22 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 23 N -0.90 -26.76 13.29 55.43 0.74 -26.03 16 24 Si 0.90 22.07 29.54 -169.99 -5.02 17.05 16 25 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 26 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 27 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 28 C 0.05 0.58 5.15 -2.30 -0.01 0.57 16 29 O -0.22 -2.06 10.87 5.38 0.06 -2.00 16 30 H 0.10 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.11 0.21 8.14 -51.92 -0.42 -0.21 16 32 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 33 H 0.09 0.57 8.12 -51.93 -0.42 0.15 16 34 H 0.11 0.68 6.73 -51.93 -0.35 0.33 16 35 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.07 0.67 6.53 -51.93 -0.34 0.34 16 37 H 0.08 0.61 7.15 -51.93 -0.37 0.23 16 38 H 0.07 0.58 7.87 -51.93 -0.41 0.17 16 39 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 40 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 41 H 0.06 0.81 7.31 -51.93 -0.38 0.43 16 42 H 0.06 0.74 7.93 -51.93 -0.41 0.32 16 43 H 0.10 1.29 7.33 -51.93 -0.38 0.91 16 44 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.07 1.20 8.07 -51.93 -0.42 0.78 16 46 H 0.05 0.69 6.44 -51.93 -0.33 0.36 16 47 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 48 H 0.04 1.27 7.42 -51.93 -0.39 0.89 16 49 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 50 H 0.06 0.59 7.81 -51.93 -0.41 0.19 16 51 H 0.08 0.84 8.01 -51.93 -0.42 0.43 16 LS Contribution 412.86 15.07 6.22 6.22 Total: -1.00 -36.57 412.86 -7.83 -44.40 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: -8.37 Total: -4.25 kcal Atomic # 6 Polarization: 10.30 SS G_CDS: 0.43 Total: 10.74 kcal Atomic # 7 Polarization: -57.89 SS G_CDS: -1.23 Total: -59.13 kcal Atomic # 8 Polarization: -15.17 SS G_CDS: 0.14 Total: -15.02 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -36.57 -7.83 -44.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078891397.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.296 kcal (2) G-P(sol) polarization free energy of solvation -36.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.399 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds