Wall clock time and date at job start Tue Mar 31 2020 06:52:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30276 * 126.28021 * 2 1 4 4 N 1.28668 * 109.37839 * 179.73366 * 3 2 1 5 5 C 1.30276 * 109.38387 * 0.44106 * 4 3 2 6 6 C 1.50697 * 126.28206 * 179.82847 * 5 4 3 7 7 N 1.46901 * 109.47250 * 89.69380 * 6 5 4 8 8 C 1.46901 * 111.00134 * 66.03848 * 7 6 5 9 9 C 1.46898 * 110.99925 * 190.00108 * 7 6 5 10 10 H 1.09001 * 110.26985 * 302.08384 * 9 7 6 11 11 C 1.54588 * 110.31303 * 64.27895 * 9 7 6 12 12 C 1.54944 * 102.92243 * 140.87057 * 11 9 7 13 13 N 1.48533 * 103.22389 * 322.59042 * 12 11 9 14 14 C 1.46907 * 110.99646 * 159.72133 * 13 12 11 15 15 C 1.50701 * 109.47219 * 52.59606 * 14 13 12 16 16 O 1.21284 * 120.00056 * 0.02562 * 15 14 13 17 17 N 1.34776 * 119.99532 * 179.97438 * 15 14 13 18 18 C 1.46494 * 120.00583 * 0.02562 * 17 15 14 19 19 C 1.46503 * 119.99393 * 180.02562 * 17 15 14 20 20 C 1.50699 * 109.46825 * 269.99942 * 19 17 15 21 21 H 1.07999 * 120.00803 * 0.02562 * 20 19 17 22 22 C 1.37881 * 119.99889 * 180.02562 * 20 19 17 23 23 N 1.31520 * 120.00186 * 180.02562 * 22 20 19 24 24 Si 1.86798 * 120.00030 * 0.02562 * 22 20 19 25 25 H 1.48506 * 109.47297 * 89.99863 * 24 22 20 26 26 H 1.48503 * 109.47261 * 330.00044 * 24 22 20 27 27 H 1.48500 * 109.47454 * 210.00037 * 24 22 20 28 28 C 1.47900 * 105.82427 * 39.20479 * 13 12 11 29 29 O 1.34363 * 107.43309 * 359.56838 * 5 4 3 30 30 H 1.08996 * 109.47263 * 270.00019 * 1 2 3 31 31 H 1.09004 * 109.46945 * 30.00310 * 1 2 3 32 32 H 1.09001 * 109.46577 * 150.00177 * 1 2 3 33 33 H 1.08997 * 109.47617 * 329.68793 * 6 5 4 34 34 H 1.09000 * 109.46853 * 209.69238 * 6 5 4 35 35 H 1.08998 * 109.47151 * 183.95340 * 8 7 6 36 36 H 1.08998 * 109.47155 * 303.96004 * 8 7 6 37 37 H 1.09007 * 109.46624 * 63.96051 * 8 7 6 38 38 H 1.08996 * 110.72723 * 259.23456 * 11 9 7 39 39 H 1.09006 * 110.72374 * 22.34019 * 11 9 7 40 40 H 1.08993 * 110.66954 * 204.14999 * 12 11 9 41 41 H 1.09003 * 110.66047 * 81.02545 * 12 11 9 42 42 H 1.09003 * 109.46839 * 292.59881 * 14 13 12 43 43 H 1.08990 * 109.46913 * 172.60183 * 14 13 12 44 44 H 1.09001 * 109.47000 * 270.00032 * 18 17 15 45 45 H 1.09004 * 109.46862 * 29.99455 * 18 17 15 46 46 H 1.08990 * 109.47708 * 149.99604 * 18 17 15 47 47 H 1.09004 * 109.46958 * 150.00353 * 19 17 15 48 48 H 1.08997 * 109.47731 * 30.00029 * 19 17 15 49 49 H 0.96998 * 120.00124 * 180.02562 * 23 22 20 50 50 H 1.09001 * 109.91816 * 94.02186 * 28 13 12 51 51 H 1.09000 * 109.91332 * 215.11751 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2779 1.0502 0.0000 4 7 3.5090 0.6761 0.0056 5 6 3.5655 -0.6254 0.0000 6 6 4.8177 -1.4637 0.0000 7 7 5.2246 -1.7362 1.3849 8 6 4.2370 -2.5831 2.0669 9 6 6.5611 -2.3442 1.4310 10 1 6.5764 -3.2668 0.8507 11 6 7.6202 -1.3534 0.8957 12 6 8.8222 -1.5843 1.8458 13 7 8.1752 -1.8088 3.1639 14 6 9.0835 -2.5061 4.0841 15 6 10.3964 -1.7690 4.1489 16 8 10.5592 -0.7617 3.4934 17 7 11.3891 -2.2288 4.9361 18 6 11.1922 -3.4452 5.7283 19 6 12.6651 -1.5119 4.9994 20 6 13.5957 -2.0484 3.9424 21 1 13.2692 -2.8436 3.2885 22 6 14.8641 -1.5242 3.8101 23 7 15.6760 -1.9921 2.8873 24 14 15.4292 -0.1494 4.9414 25 1 16.0655 -0.7327 6.1498 26 1 14.2596 0.6717 5.3453 27 1 16.4119 0.7059 4.2286 28 6 6.9714 -2.6229 2.8889 29 8 2.3022 -1.0831 0.0000 30 1 -0.3633 0.0000 1.0276 31 1 -0.3633 0.8900 -0.5139 32 1 -0.3632 -0.8900 -0.5138 33 1 5.6148 -0.9263 -0.5139 34 1 4.6245 -2.4054 -0.5139 35 1 4.5268 -2.7115 3.1098 36 1 3.2565 -2.1095 2.0178 37 1 4.1949 -3.5570 1.5790 38 1 7.8893 -1.5948 -0.1325 39 1 7.2597 -0.3272 0.9679 40 1 9.4629 -0.7032 1.8768 41 1 9.3899 -2.4636 1.5411 42 1 9.2542 -3.5215 3.7262 43 1 8.6372 -2.5414 5.0778 44 1 10.7867 -3.1810 6.7050 45 1 10.4955 -4.1060 5.2123 46 1 12.1476 -3.9537 5.8569 47 1 13.1128 -1.6531 5.9832 48 1 12.4940 -0.4493 4.8273 49 1 16.5685 -1.6235 2.7944 50 1 7.2021 -3.6808 3.0140 51 1 6.1666 -2.3359 3.5657 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078891401.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:21 Heat of formation + Delta-G solvation = 46.972024 kcal Electronic energy + Delta-G solvation = -31234.564254 eV Core-core repulsion = 26979.591033 eV Total energy + Delta-G solvation = -4254.973221 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 351.206 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -44.53344 -40.01034 -38.78997 -36.63367 -36.43745 -34.85917 -33.41804 -32.59321 -31.59049 -30.30335 -28.89694 -28.14928 -27.36980 -26.53760 -25.63191 -24.44045 -22.95605 -22.36172 -22.25748 -21.00497 -20.17554 -18.51398 -17.92176 -17.49184 -16.96265 -16.89279 -16.22862 -16.19272 -15.61341 -15.43719 -15.11063 -14.93729 -14.70539 -14.19022 -14.08605 -13.73826 -13.71837 -13.58396 -13.23950 -12.93105 -12.80951 -12.71544 -12.57296 -12.48773 -12.35847 -12.11536 -12.06530 -11.99173 -11.80771 -11.58983 -11.41552 -11.29251 -11.21993 -11.08244 -11.01232 -10.65724 -10.48935 -10.09220 -9.85727 -9.54796 -8.91985 -8.80067 -8.59402 -8.22980 -7.69300 -6.09250 -4.08030 0.77834 1.85257 2.08631 3.27600 3.31289 3.34758 3.36149 3.41484 3.55534 3.65883 3.97903 4.18335 4.35717 4.40044 4.40720 4.60789 4.74233 4.75581 4.82332 4.92916 4.95357 4.99378 5.09744 5.09982 5.13886 5.23134 5.24995 5.29530 5.33202 5.36854 5.40268 5.48827 5.55118 5.61303 5.67573 5.69754 5.80848 5.84694 6.13098 6.17723 6.42972 6.47727 6.64080 6.67037 6.94975 7.00611 7.09372 7.35745 7.61095 8.02373 8.25054 8.46617 8.92209 9.00996 9.51337 11.04038 Molecular weight = 351.21amu Principal moments of inertia in cm(-1) A = 0.022646 B = 0.001835 C = 0.001780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.097625 B =15255.821753 C =15724.918488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.157 3.843 3 N -0.288 5.288 4 N -0.265 5.265 5 C 0.173 3.827 6 C 0.150 3.850 7 N -0.524 5.524 8 C 0.015 3.985 9 C 0.077 3.923 10 H 0.054 0.946 11 C -0.123 4.123 12 C 0.036 3.964 13 N -0.494 5.494 14 C 0.029 3.971 15 C 0.508 3.492 16 O -0.524 6.524 17 N -0.599 5.599 18 C 0.083 3.917 19 C 0.216 3.784 20 C -0.529 4.529 21 H 0.073 0.927 22 C 0.072 3.928 23 N -0.898 5.898 24 Si 0.875 3.125 25 H -0.276 1.276 26 H -0.263 1.263 27 H -0.284 1.284 28 C 0.042 3.958 29 O -0.229 6.229 30 H 0.099 0.901 31 H 0.106 0.894 32 H 0.091 0.909 33 H 0.126 0.874 34 H 0.068 0.932 35 H 0.082 0.918 36 H 0.062 0.938 37 H 0.032 0.968 38 H 0.071 0.929 39 H 0.091 0.909 40 H 0.121 0.879 41 H 0.040 0.960 42 H 0.059 0.941 43 H 0.098 0.902 44 H 0.046 0.954 45 H 0.057 0.943 46 H 0.076 0.924 47 H 0.025 0.975 48 H 0.042 0.958 49 H 0.264 0.736 50 H 0.046 0.954 51 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.080 -5.595 -3.211 30.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.054 4.054 3 N -0.136 5.136 4 N -0.111 5.111 5 C -0.038 4.038 6 C 0.021 3.979 7 N -0.250 5.250 8 C -0.132 4.132 9 C -0.031 4.031 10 H 0.072 0.928 11 C -0.161 4.161 12 C -0.092 4.092 13 N -0.218 5.218 14 C -0.103 4.103 15 C 0.294 3.706 16 O -0.400 6.400 17 N -0.332 5.332 18 C -0.061 4.061 19 C 0.096 3.904 20 C -0.567 4.567 21 H 0.091 0.909 22 C -0.130 4.130 23 N -0.536 5.536 24 Si 0.702 3.298 25 H -0.202 1.202 26 H -0.187 1.187 27 H -0.209 1.209 28 C -0.087 4.087 29 O -0.109 6.109 30 H 0.117 0.883 31 H 0.125 0.875 32 H 0.110 0.890 33 H 0.144 0.856 34 H 0.086 0.914 35 H 0.101 0.899 36 H 0.081 0.919 37 H 0.051 0.949 38 H 0.089 0.911 39 H 0.110 0.890 40 H 0.138 0.862 41 H 0.058 0.942 42 H 0.077 0.923 43 H 0.116 0.884 44 H 0.064 0.936 45 H 0.076 0.924 46 H 0.095 0.905 47 H 0.043 0.957 48 H 0.060 0.940 49 H 0.074 0.926 50 H 0.064 0.936 51 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -29.518 -2.870 -3.114 29.820 hybrid contribution 0.250 -2.359 -0.124 2.375 sum -29.268 -5.229 -3.239 29.908 Atomic orbital electron populations 1.20350 0.80237 1.05651 1.05277 1.28036 0.97832 0.79762 0.99754 1.74463 0.96180 1.25612 1.17330 1.74445 1.11821 1.09138 1.15718 1.27760 0.84648 0.91692 0.99742 1.20495 0.88405 0.97007 0.92004 1.62025 1.02577 1.47358 1.13029 1.22559 0.95426 0.94892 1.00360 1.22570 0.87412 0.96085 0.96995 0.92824 1.22733 0.94273 1.00586 0.98501 1.23508 0.95751 1.03460 0.86448 1.64689 1.04778 1.41289 1.11065 1.22282 0.92748 0.96006 0.99229 1.20115 0.84656 0.85657 0.80205 1.90605 1.81579 1.25513 1.42331 1.47823 1.15008 1.26475 1.43893 1.21664 1.02567 0.87327 0.94556 1.19659 0.80144 0.93701 0.96923 1.21318 0.97293 1.20993 1.17104 0.90904 1.24860 0.96416 0.96440 0.95311 1.69896 1.07832 1.42592 1.33314 0.86855 0.79164 0.82831 0.80958 1.20152 1.18747 1.20932 1.23039 0.94842 0.95517 0.95269 1.84778 1.17737 1.38495 1.69865 0.88286 0.87512 0.88978 0.85590 0.91365 0.89942 0.91878 0.94940 0.91076 0.89044 0.86155 0.94185 0.92298 0.88423 0.93563 0.92403 0.90547 0.95722 0.93982 0.92571 0.93626 0.89246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.20 10.51 36.01 0.38 0.18 16 2 C 0.16 1.40 8.48 -12.94 -0.11 1.29 16 3 N -0.29 -3.60 12.22 32.55 0.40 -3.20 16 4 N -0.26 -3.56 12.22 32.55 0.40 -3.17 16 5 C 0.17 1.85 7.04 -12.94 -0.09 1.76 16 6 C 0.15 1.28 5.47 -4.98 -0.03 1.25 16 7 N -0.52 -5.01 4.55 -234.70 -1.07 -6.08 16 8 C 0.02 0.12 9.05 60.07 0.54 0.66 16 9 C 0.08 0.76 2.73 -66.36 -0.18 0.58 16 10 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 11 C -0.12 -1.43 5.44 -24.87 -0.14 -1.57 16 12 C 0.04 0.55 5.30 -1.89 -0.01 0.54 16 13 N -0.49 -7.26 5.26 -231.89 -1.22 -8.48 16 14 C 0.03 0.42 4.07 -4.97 -0.02 0.40 16 15 C 0.51 10.20 7.38 -10.99 -0.08 10.12 16 16 O -0.52 -12.59 13.10 5.55 0.07 -12.51 16 17 N -0.60 -12.19 2.86 -182.96 -0.52 -12.72 16 18 C 0.08 1.23 10.24 59.84 0.61 1.85 16 19 C 0.22 5.28 4.23 -5.19 -0.02 5.26 16 20 C -0.53 -15.11 9.94 -34.44 -0.34 -15.45 16 21 H 0.07 2.28 8.06 -52.49 -0.42 1.85 16 22 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 23 N -0.90 -27.60 13.96 55.43 0.77 -26.82 16 24 Si 0.88 21.60 27.47 -169.99 -4.67 16.93 16 25 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 26 H -0.26 -6.37 6.54 56.52 0.37 -6.00 16 27 H -0.28 -6.99 7.11 56.52 0.40 -6.58 16 28 C 0.04 0.45 5.89 -2.75 -0.02 0.44 16 29 O -0.23 -2.18 10.17 5.37 0.05 -2.13 16 30 H 0.10 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.11 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.09 0.15 8.14 -51.93 -0.42 -0.28 16 33 H 0.13 1.03 6.93 -51.93 -0.36 0.67 16 34 H 0.07 0.43 8.12 -51.93 -0.42 0.01 16 35 H 0.08 0.62 6.08 -51.93 -0.32 0.30 16 36 H 0.06 0.53 6.62 -51.93 -0.34 0.19 16 37 H 0.03 0.21 8.14 -51.92 -0.42 -0.21 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.09 1.18 7.98 -51.93 -0.41 0.77 16 40 H 0.12 2.30 5.97 -51.93 -0.31 1.99 16 41 H 0.04 0.63 8.02 -51.93 -0.42 0.21 16 42 H 0.06 0.78 7.07 -51.93 -0.37 0.41 16 43 H 0.10 1.22 8.11 -51.93 -0.42 0.80 16 44 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.06 0.70 6.44 -51.93 -0.33 0.37 16 46 H 0.08 1.19 8.07 -51.93 -0.42 0.77 16 47 H 0.02 0.57 7.50 -51.93 -0.39 0.18 16 48 H 0.04 1.11 6.48 -51.93 -0.34 0.78 16 49 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 50 H 0.05 0.44 7.57 -51.93 -0.39 0.04 16 51 H 0.09 0.95 6.04 -51.93 -0.31 0.63 16 LS Contribution 404.17 15.07 6.09 6.09 Total: -1.00 -37.26 404.17 -7.40 -44.66 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: -8.11 Total: -1.88 kcal Atomic # 6 Polarization: 8.91 SS G_CDS: 0.40 Total: 9.31 kcal Atomic # 7 Polarization: -59.23 SS G_CDS: -1.24 Total: -60.47 kcal Atomic # 8 Polarization: -14.77 SS G_CDS: 0.13 Total: -14.64 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.67 Total: 16.93 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -37.26 -7.40 -44.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078891401.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.629 kcal (2) G-P(sol) polarization free energy of solvation -37.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds