Wall clock time and date at job start Tue Mar 31 2020 06:44:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 110.32084 * 2 1 4 4 C 1.54905 * 110.46276 * 237.70333 * 2 1 3 5 5 C 1.55157 * 101.57793 * 278.12095 * 4 2 1 6 6 H 1.09004 * 110.87360 * 82.93492 * 5 4 2 7 7 C 1.50707 * 110.71607 * 206.13427 * 5 4 2 8 8 C 1.38238 * 119.99792 * 233.52391 * 7 5 4 9 9 C 1.38235 * 119.99712 * 179.97438 * 8 7 5 10 10 C 1.38234 * 120.00220 * 359.97124 * 9 8 7 11 11 C 1.38233 * 120.00037 * 0.28719 * 10 9 8 12 12 C 1.38234 * 120.00179 * 53.50328 * 7 5 4 13 13 C 1.54323 * 102.94557 * 324.49756 * 5 4 2 14 14 H 1.09003 * 109.88292 * 262.62673 * 13 5 4 15 15 C 1.52995 * 109.88170 * 141.61206 * 13 5 4 16 16 N 1.47024 * 107.26884 * 22.19349 * 13 5 4 17 17 S 1.65596 * 125.64490 * 181.02386 * 16 13 5 18 18 O 1.42103 * 104.27500 * 206.07079 * 17 16 13 19 19 O 1.42097 * 104.28177 * 333.92842 * 17 16 13 20 20 C 1.81398 * 104.44907 * 90.00432 * 17 16 13 21 21 C 1.53003 * 109.47285 * 179.97438 * 20 17 16 22 22 C 1.52994 * 109.47308 * 179.97438 * 21 20 17 23 23 C 1.50706 * 109.47298 * 179.97438 * 22 21 20 24 24 H 1.07998 * 119.99812 * 0.02562 * 23 22 21 25 25 C 1.37872 * 119.99921 * 179.97438 * 23 22 21 26 26 N 1.31512 * 120.00611 * 0.02562 * 25 23 22 27 27 Si 1.86806 * 119.99641 * 180.02562 * 25 23 22 28 28 H 1.48498 * 109.47250 * 90.00169 * 27 25 23 29 29 H 1.48503 * 109.46880 * 210.00035 * 27 25 23 30 30 H 1.48496 * 109.47154 * 329.99811 * 27 25 23 31 31 H 1.09003 * 109.47270 * 297.76158 * 1 2 3 32 32 H 1.08998 * 109.47128 * 57.76377 * 1 2 3 33 33 H 1.09002 * 109.46913 * 177.76299 * 1 2 3 34 34 H 1.08996 * 111.00554 * 160.04721 * 4 2 1 35 35 H 1.09000 * 111.00261 * 36.19738 * 4 2 1 36 36 H 1.08005 * 120.00068 * 359.97438 * 8 7 5 37 37 H 1.07999 * 119.99770 * 179.97438 * 9 8 7 38 38 H 1.08002 * 119.99744 * 180.02562 * 10 9 8 39 39 H 1.07998 * 120.00395 * 179.72811 * 11 10 9 40 40 H 1.07999 * 119.99968 * 359.97438 * 12 7 5 41 41 H 1.08998 * 109.47320 * 60.00005 * 15 13 5 42 42 H 1.09001 * 109.46595 * 179.97438 * 15 13 5 43 43 H 1.08998 * 109.47267 * 299.99574 * 15 13 5 44 44 H 1.08998 * 109.47269 * 299.99161 * 20 17 16 45 45 H 1.09004 * 109.47674 * 60.00029 * 20 17 16 46 46 H 1.09005 * 109.47174 * 299.99895 * 21 20 17 47 47 H 1.09000 * 109.47381 * 59.99296 * 21 20 17 48 48 H 1.08995 * 109.47615 * 299.99920 * 22 21 20 49 49 H 1.09004 * 109.47400 * 60.00258 * 22 21 20 50 50 H 0.96992 * 120.00451 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9086 1.0222 0.0000 4 6 2.0716 -0.7754 -1.2268 5 6 1.9793 -2.2434 -0.7329 6 1 0.9724 -2.6373 -0.8718 7 6 2.9905 -3.1085 -1.4402 8 6 2.5832 -4.2617 -2.0846 9 6 3.5107 -5.0549 -2.7338 10 6 4.8452 -4.6946 -2.7393 11 6 5.2532 -3.5442 -2.0904 12 6 4.3251 -2.7485 -1.4451 13 6 2.3169 -2.1249 0.7683 14 1 3.3689 -2.3595 0.9313 15 6 1.4391 -3.0828 1.5762 16 7 2.0431 -0.7371 1.1691 17 16 2.2722 -0.1068 2.6832 18 8 1.3489 0.9708 2.7574 19 8 2.1614 -1.2274 3.5498 20 6 3.9760 0.5152 2.6615 21 6 4.3118 1.1302 4.0216 22 6 5.7491 1.6543 4.0035 23 6 6.0796 2.2607 5.3430 24 1 5.3388 2.2708 6.1288 25 6 7.3282 2.8015 5.5657 26 7 8.2305 2.7888 4.6091 27 14 7.7381 3.5524 7.2263 28 1 8.3055 2.5073 8.1157 29 1 8.7315 4.6413 7.0455 30 1 6.5031 4.1057 7.8378 31 1 -0.3634 0.4787 0.9094 32 1 -0.3633 0.5482 -0.8692 33 1 -0.3633 -1.0269 -0.0401 34 1 3.1042 -0.4989 -1.4391 35 1 1.4388 -0.6164 -2.0999 36 1 1.5405 -4.5430 -2.0807 37 1 3.1926 -5.9561 -3.2369 38 1 5.5697 -5.3141 -3.2469 39 1 6.2965 -3.2650 -2.0909 40 1 4.6432 -1.8472 -0.9423 41 1 1.6192 -4.1061 1.2468 42 1 1.6834 -2.9940 2.6348 43 1 0.3898 -2.8309 1.4228 44 1 4.6606 -0.3076 2.4555 45 1 4.0760 1.2741 1.8854 46 1 3.6272 1.9532 4.2273 47 1 4.2117 0.3718 4.7980 48 1 6.4335 0.8312 3.7981 49 1 5.8496 2.4128 3.2271 50 1 9.1087 3.1696 4.7656 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078904028.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:59 Heat of formation + Delta-G solvation = -65.588221 kcal Electronic energy + Delta-G solvation = -29598.666854 eV Core-core repulsion = 25716.980023 eV Total energy + Delta-G solvation = -3881.686830 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 351.166 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.38701 -38.51125 -36.94507 -35.72864 -34.66995 -33.16432 -32.23965 -32.18182 -31.15019 -29.46142 -28.25367 -27.75573 -24.70337 -23.72594 -23.06484 -22.40301 -21.50504 -20.48110 -20.31239 -18.66233 -17.82084 -16.87214 -16.61403 -16.11932 -15.73950 -15.56092 -15.21295 -14.76205 -14.49973 -14.31686 -14.00818 -13.98014 -13.85707 -13.66063 -13.45761 -13.07450 -12.79134 -12.61478 -12.60087 -12.31288 -12.19001 -11.92222 -11.86692 -11.76345 -11.73808 -11.63530 -11.42003 -11.28872 -11.21003 -10.94225 -10.92343 -10.85665 -10.79379 -10.61185 -10.41197 -9.95839 -9.53283 -9.24404 -9.14822 -8.94344 -8.86014 -8.41313 -6.06198 -4.09289 0.42297 1.09560 1.16729 2.75112 3.30106 3.36168 3.40334 3.50039 4.00919 4.09840 4.23358 4.36364 4.42272 4.59411 4.68924 4.76642 4.89448 4.91307 4.96976 5.03604 5.10644 5.14378 5.15528 5.24844 5.30196 5.30793 5.36609 5.37331 5.52373 5.54725 5.59557 5.74524 5.79127 5.81296 5.84948 5.88416 6.00333 6.14913 6.20265 6.23224 6.25990 6.29534 6.35964 6.41528 6.44429 6.44806 6.76304 6.86590 7.56234 7.66165 7.91770 8.32265 8.96896 9.55469 11.05043 Molecular weight = 351.17amu Principal moments of inertia in cm(-1) A = 0.011896 B = 0.002747 C = 0.002398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2353.252372 B =10191.298934 C =11672.691643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.149 3.851 3 H 0.086 0.914 4 C -0.119 4.119 5 C -0.053 4.053 6 H 0.093 0.907 7 C -0.071 4.071 8 C -0.115 4.115 9 C -0.120 4.120 10 C -0.125 4.125 11 C -0.116 4.116 12 C -0.114 4.114 13 C 0.159 3.841 14 H 0.077 0.923 15 C -0.183 4.183 16 N -1.009 6.009 17 S 2.610 3.390 18 O -0.956 6.956 19 O -0.954 6.954 20 C -0.610 4.610 21 C -0.105 4.105 22 C 0.031 3.969 23 C -0.526 4.526 24 H 0.058 0.942 25 C 0.058 3.942 26 N -0.895 5.895 27 Si 0.894 3.106 28 H -0.279 1.279 29 H -0.286 1.286 30 H -0.273 1.273 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.058 0.942 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.121 0.879 37 H 0.120 0.880 38 H 0.119 0.881 39 H 0.123 0.877 40 H 0.125 0.875 41 H 0.062 0.938 42 H 0.093 0.907 43 H 0.057 0.943 44 H 0.126 0.874 45 H 0.126 0.874 46 H 0.065 0.935 47 H 0.065 0.935 48 H 0.020 0.980 49 H 0.020 0.980 50 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.868 -14.118 -18.665 26.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.043 3.957 3 H 0.104 0.896 4 C -0.158 4.158 5 C -0.073 4.073 6 H 0.112 0.888 7 C -0.072 4.072 8 C -0.133 4.133 9 C -0.138 4.138 10 C -0.143 4.143 11 C -0.134 4.134 12 C -0.132 4.132 13 C 0.053 3.947 14 H 0.095 0.905 15 C -0.241 4.241 16 N -0.845 5.845 17 S 2.709 3.291 18 O -0.947 6.947 19 O -0.945 6.945 20 C -0.742 4.742 21 C -0.145 4.145 22 C -0.007 4.007 23 C -0.564 4.564 24 H 0.076 0.924 25 C -0.144 4.144 26 N -0.534 5.534 27 Si 0.722 3.278 28 H -0.205 1.205 29 H -0.212 1.212 30 H -0.197 1.197 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.077 0.923 34 H 0.100 0.900 35 H 0.102 0.898 36 H 0.139 0.861 37 H 0.138 0.862 38 H 0.137 0.863 39 H 0.141 0.859 40 H 0.143 0.857 41 H 0.081 0.919 42 H 0.111 0.889 43 H 0.076 0.924 44 H 0.144 0.856 45 H 0.144 0.856 46 H 0.084 0.916 47 H 0.084 0.916 48 H 0.039 0.961 49 H 0.039 0.961 50 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -13.352 -14.019 -17.921 26.381 hybrid contribution 1.071 0.464 0.435 1.246 sum -12.281 -13.555 -17.486 25.305 Atomic orbital electron populations 1.22228 0.94888 1.02331 1.03068 1.21496 0.94334 0.95664 0.84210 0.89624 1.22979 1.02420 0.93193 0.97197 1.21293 0.98164 0.94761 0.93105 0.88831 1.19686 0.94021 0.95373 0.98078 1.21044 0.99590 0.94553 0.98111 1.21126 0.93400 0.99624 0.99653 1.21166 0.96044 0.97208 0.99844 1.21193 0.99695 0.94977 0.97539 1.21099 0.92633 1.00017 0.99446 1.21332 0.99427 0.80804 0.93102 0.90519 1.22535 0.99838 0.98534 1.03200 1.58973 1.79730 1.18398 1.27363 1.05116 0.77987 0.74169 0.71824 1.93559 1.59783 1.56480 1.84852 1.93521 1.86816 1.50751 1.63416 1.30608 1.22653 1.12022 1.08903 1.21497 1.03427 0.99668 0.89882 1.19054 0.87916 0.96207 0.97511 1.21254 0.98385 1.38388 0.98418 0.92378 1.25016 0.96352 0.95997 0.96991 1.69952 1.05219 1.45786 1.32483 0.86559 0.78281 0.78947 0.84054 1.20549 1.21154 1.19732 0.91121 0.91633 0.92279 0.90031 0.89772 0.86143 0.86221 0.86254 0.85933 0.85731 0.91871 0.88873 0.92360 0.85570 0.85561 0.91650 0.91634 0.96148 0.96148 0.92893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.56 9.51 37.16 0.35 -1.20 16 2 C 0.15 1.45 3.32 -66.42 -0.22 1.23 16 3 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 4 C -0.12 -0.92 5.94 -24.58 -0.15 -1.06 16 5 C -0.05 -0.44 2.32 -89.93 -0.21 -0.65 16 6 H 0.09 0.68 7.24 -51.93 -0.38 0.31 16 7 C -0.07 -0.61 4.92 -104.62 -0.51 -1.12 16 8 C -0.11 -0.90 9.68 -39.58 -0.38 -1.28 16 9 C -0.12 -0.91 10.05 -39.58 -0.40 -1.31 16 10 C -0.12 -0.98 10.05 -39.58 -0.40 -1.38 16 11 C -0.12 -0.99 10.05 -39.58 -0.40 -1.39 16 12 C -0.11 -1.02 8.15 -39.58 -0.32 -1.35 16 13 C 0.16 1.66 3.17 -66.95 -0.21 1.45 16 14 H 0.08 0.80 7.11 -51.93 -0.37 0.43 16 15 C -0.18 -1.99 8.97 37.16 0.33 -1.66 16 16 N -1.01 -11.77 2.98 -97.52 -0.29 -12.06 16 17 S 2.61 39.63 5.64 -107.50 -0.61 39.02 16 18 O -0.96 -16.85 16.96 -57.54 -0.98 -17.82 16 19 O -0.95 -16.59 15.01 -57.54 -0.86 -17.46 16 20 C -0.61 -9.65 6.18 37.16 0.23 -9.42 16 21 C -0.11 -2.17 5.16 -26.73 -0.14 -2.30 16 22 C 0.03 0.80 4.97 -27.88 -0.14 0.66 16 23 C -0.53 -14.91 9.11 -34.44 -0.31 -15.22 16 24 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 25 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 26 N -0.90 -26.63 13.29 55.43 0.74 -25.90 16 27 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 28 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 29 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 30 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 31 H 0.07 0.82 7.49 -51.93 -0.39 0.43 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.51 7.40 -51.93 -0.38 0.12 16 34 H 0.08 0.62 6.75 -51.93 -0.35 0.27 16 35 H 0.08 0.52 8.04 -51.93 -0.42 0.11 16 36 H 0.12 0.75 7.98 -52.48 -0.42 0.33 16 37 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 38 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 39 H 0.12 0.90 8.06 -52.49 -0.42 0.47 16 40 H 0.12 1.07 7.28 -52.49 -0.38 0.69 16 41 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.09 1.25 5.69 -51.93 -0.30 0.96 16 43 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.13 1.80 8.14 -51.92 -0.42 1.38 16 45 H 0.13 1.79 8.14 -51.92 -0.42 1.37 16 46 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 47 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 48 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 49 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 50 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 408.38 15.07 6.15 6.15 Total: -1.00 -34.01 408.38 -12.26 -46.27 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -8.42 Total: -0.39 kcal Atomic # 6 Polarization: -31.47 SS G_CDS: -2.97 Total: -34.45 kcal Atomic # 7 Polarization: -38.41 SS G_CDS: 0.45 Total: -37.96 kcal Atomic # 8 Polarization: -33.44 SS G_CDS: -1.84 Total: -35.28 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Atomic # 16 Polarization: 39.63 SS G_CDS: -0.61 Total: 39.02 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -34.01 -12.26 -46.27 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078904028.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.321 kcal (2) G-P(sol) polarization free energy of solvation -34.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds