Wall clock time and date at job start Tue Mar 31 2020 05:21:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30876 * 1 3 3 Si 1.86805 * 119.99792 * 2 1 4 4 H 1.48495 * 109.47130 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46674 * 299.99669 * 3 2 1 6 6 H 1.48496 * 109.47201 * 59.99667 * 3 2 1 7 7 C 1.39888 * 120.00161 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99935 * 197.93121 * 7 2 1 9 9 C 1.41221 * 120.00004 * 17.93882 * 7 2 1 10 10 C 1.40832 * 120.17809 * 204.53980 * 9 7 2 11 11 C 1.36437 * 119.81044 * 180.02562 * 10 9 7 12 12 C 1.39308 * 120.18362 * 359.97438 * 11 10 9 13 13 O 1.35682 * 119.81855 * 179.97438 * 12 11 10 14 14 C 1.42898 * 117.00258 * 180.02562 * 13 12 11 15 15 C 1.52994 * 109.47101 * 179.97438 * 14 13 12 16 16 N 1.46500 * 109.47059 * 65.00299 * 15 14 13 17 17 C 1.34774 * 120.00147 * 180.02562 * 16 15 14 18 18 O 1.21612 * 120.00141 * 359.97438 * 17 16 15 19 19 C 1.47382 * 120.00327 * 179.97438 * 17 16 15 20 20 C 1.39319 * 120.33995 * 0.02562 * 19 17 16 21 21 C 1.38271 * 120.19700 * 179.97438 * 20 19 17 22 22 C 1.38061 * 120.88844 * 359.97438 * 21 20 19 23 23 C 1.38984 * 120.26412 * 0.04969 * 22 21 20 24 24 N 1.37801 * 133.37559 * 179.97438 * 23 22 21 25 25 H 0.97004 * 125.06877 * 359.97438 * 24 23 22 26 26 C 1.36543 * 109.85183 * 180.02562 * 24 23 22 27 27 C 1.34548 * 109.90066 * 359.97438 * 26 24 23 28 28 C 1.40666 * 119.51944 * 359.67243 * 23 22 21 29 29 C 1.39314 * 120.36941 * 0.25980 * 12 11 10 30 30 C 1.36444 * 120.18085 * 359.47715 * 29 12 11 31 31 H 0.96999 * 120.00298 * 0.02562 * 1 2 3 32 32 H 1.07995 * 120.09496 * 359.97438 * 10 9 7 33 33 H 1.08002 * 119.90689 * 179.97438 * 11 10 9 34 34 H 1.09001 * 109.46909 * 300.00162 * 14 13 12 35 35 H 1.09001 * 109.46747 * 60.00017 * 14 13 12 36 36 H 1.09004 * 109.47159 * 184.99961 * 15 14 13 37 37 H 1.09001 * 109.47472 * 305.00079 * 15 14 13 38 38 H 0.97000 * 120.00115 * 359.97438 * 16 15 14 39 39 H 1.07998 * 119.90530 * 0.02562 * 20 19 17 40 40 H 1.08002 * 119.55707 * 179.97438 * 21 20 19 41 41 H 1.07991 * 119.87010 * 180.02562 * 22 21 20 42 42 H 1.08006 * 125.05174 * 179.97438 * 26 24 23 43 43 H 1.07998 * 126.49555 * 180.02562 * 27 26 24 44 44 H 1.07995 * 119.90996 * 179.72377 * 29 12 11 45 45 H 1.07991 * 120.09377 * 180.25736 * 30 29 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 3.7027 1.3465 0.0006 5 1 1.8839 2.3964 -1.2126 6 1 1.8839 2.3965 1.2124 7 6 2.0082 -1.2114 0.0005 8 1 3.0489 -1.2340 0.2885 9 6 1.3536 -2.4049 -0.3756 10 6 1.8264 -3.6480 0.0877 11 6 1.1886 -4.7964 -0.2808 12 6 0.0724 -4.7416 -1.1125 13 8 -0.5559 -5.8883 -1.4748 14 6 -1.6940 -5.7623 -2.3298 15 6 -2.2641 -7.1505 -2.6279 16 7 -2.7735 -7.7454 -1.3898 17 6 -3.3251 -8.9749 -1.4101 18 8 -3.4005 -9.5903 -2.4563 19 6 -3.8371 -9.5736 -0.1645 20 6 -3.7549 -8.8747 1.0379 21 6 -4.2366 -9.4391 2.2046 22 6 -4.8051 -10.6972 2.2013 23 6 -4.9010 -11.4194 1.0177 24 7 -5.4030 -12.6645 0.7068 25 1 -5.8038 -13.2784 1.3420 26 6 -5.2512 -12.9054 -0.6286 27 6 -4.6599 -11.8514 -1.2198 28 6 -4.4207 -10.8564 -0.1786 29 6 -0.3989 -3.5165 -1.5792 30 6 0.2243 -2.3584 -1.2157 31 1 -0.4850 0.8400 -0.0004 32 1 2.6919 -3.6921 0.7322 33 1 1.5501 -5.7505 0.0733 34 1 -2.4534 -5.1554 -1.8367 35 1 -1.3961 -5.2842 -3.2629 36 1 -3.0762 -7.0624 -3.3496 37 1 -1.4792 -7.7849 -3.0397 38 1 -2.7131 -7.2547 -0.5552 39 1 -3.3144 -7.8889 1.0586 40 1 -4.1673 -8.8883 3.1310 41 1 -5.1765 -11.1220 3.1221 42 1 -5.5598 -13.8081 -1.1351 43 1 -4.4134 -11.7571 -2.2671 44 1 -1.2621 -3.4830 -2.2272 45 1 -0.1447 -1.4091 -1.5749 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078986434.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:27 Heat of formation + Delta-G solvation = 5.475536 kcal Electronic energy + Delta-G solvation = -28380.050379 eV Core-core repulsion = 24327.886721 eV Total energy + Delta-G solvation = -4052.163658 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 350.142 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.51378 -39.59678 -38.74957 -36.91141 -36.55518 -34.68895 -33.32710 -32.24983 -30.48598 -29.68125 -29.40936 -29.09933 -28.35697 -24.90908 -24.26377 -22.91277 -21.92104 -21.21197 -21.01988 -20.56227 -20.25996 -18.41919 -17.40249 -17.12984 -16.99936 -16.29092 -16.12150 -15.47077 -15.28281 -15.12924 -14.80971 -14.48349 -14.35893 -14.21030 -13.96996 -13.51840 -13.15358 -13.14061 -12.88730 -12.79228 -12.35270 -12.29628 -11.93076 -11.91211 -11.78250 -11.65037 -11.44437 -11.24113 -11.04893 -10.98905 -10.62506 -9.99335 -9.93113 -9.81950 -9.77788 -9.40733 -9.05573 -9.02089 -8.50805 -7.95248 -7.68253 -7.05009 -6.75670 -4.27829 0.48491 1.32747 2.49632 2.73425 2.83478 2.87830 2.93978 3.07339 3.12485 3.17431 3.21019 3.83141 3.93251 4.00623 4.47527 4.57089 4.59007 4.73968 4.86339 4.94937 5.07922 5.12536 5.29318 5.32302 5.54825 5.59488 5.64456 5.66661 5.69945 5.88852 5.94526 6.08709 6.13752 6.20070 6.25361 6.40521 6.44922 6.54092 6.68937 6.84719 6.86721 7.04341 7.23380 7.25393 7.38045 7.53142 7.55388 7.87902 7.97981 8.12445 8.25742 8.40653 8.62195 8.87836 8.96290 10.19050 Molecular weight = 350.14amu Principal moments of inertia in cm(-1) A = 0.022034 B = 0.001767 C = 0.001699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.463276 B =15843.680205 C =16476.571690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.799 5.799 2 C 0.075 3.925 3 Si 0.906 3.094 4 H -0.261 1.261 5 H -0.273 1.273 6 H -0.275 1.275 7 C -0.462 4.462 8 H 0.077 0.923 9 C 0.087 3.913 10 C -0.197 4.197 11 C -0.111 4.111 12 C -0.012 4.012 13 O -0.327 6.327 14 C 0.054 3.946 15 C 0.126 3.874 16 N -0.718 5.718 17 C 0.558 3.442 18 O -0.539 6.539 19 C -0.089 4.089 20 C -0.104 4.104 21 C -0.108 4.108 22 C -0.104 4.104 23 C 0.083 3.917 24 N -0.597 5.597 25 H 0.415 0.585 26 C 0.046 3.954 27 C -0.185 4.185 28 C -0.058 4.058 29 C -0.173 4.173 30 C -0.134 4.134 31 H 0.279 0.721 32 H 0.099 0.901 33 H 0.096 0.904 34 H 0.059 0.941 35 H 0.069 0.931 36 H 0.083 0.917 37 H 0.077 0.923 38 H 0.405 0.595 39 H 0.131 0.869 40 H 0.133 0.867 41 H 0.123 0.877 42 H 0.172 0.828 43 H 0.157 0.843 44 H 0.095 0.905 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.498 -19.099 1.983 22.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C -0.142 4.142 3 Si 0.731 3.269 4 H -0.184 1.184 5 H -0.198 1.198 6 H -0.201 1.201 7 C -0.492 4.492 8 H 0.096 0.904 9 C 0.085 3.915 10 C -0.216 4.216 11 C -0.130 4.130 12 C -0.055 4.055 13 O -0.243 6.243 14 C -0.023 4.023 15 C 0.002 3.998 16 N -0.371 5.371 17 C 0.346 3.654 18 O -0.418 6.418 19 C -0.093 4.093 20 C -0.124 4.124 21 C -0.127 4.127 22 C -0.125 4.125 23 C -0.024 4.024 24 N -0.201 5.201 25 H 0.252 0.748 26 C -0.080 4.080 27 C -0.210 4.210 28 C -0.064 4.064 29 C -0.192 4.192 30 C -0.154 4.154 31 H 0.090 0.910 32 H 0.118 0.882 33 H 0.115 0.885 34 H 0.077 0.923 35 H 0.087 0.913 36 H 0.101 0.899 37 H 0.096 0.904 38 H 0.241 0.759 39 H 0.148 0.852 40 H 0.151 0.849 41 H 0.141 0.859 42 H 0.189 0.811 43 H 0.174 0.826 44 H 0.113 0.887 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -12.734 -19.637 1.324 23.442 hybrid contribution 0.012 1.022 0.682 1.229 sum -12.722 -18.614 2.005 22.636 Atomic orbital electron populations 1.69839 1.07528 1.28994 1.36197 1.25877 0.94713 1.01252 0.92362 0.86296 0.81034 0.81098 0.78495 1.18428 1.19781 1.20077 1.19509 0.98147 0.91208 1.40327 0.90444 1.17615 0.91815 0.92198 0.89878 1.20596 1.03204 0.92238 1.05593 1.19609 0.95497 0.97634 1.00279 1.18535 0.97828 0.83729 1.05364 1.85835 1.42263 1.30994 1.65249 1.22720 0.88584 0.95758 0.95230 1.21436 0.98531 0.93208 0.86608 1.45897 1.61143 1.17755 1.12263 1.18119 0.77744 0.81020 0.88495 1.90732 1.57118 1.61555 1.32352 1.19349 1.02389 0.94159 0.93371 1.21211 0.99678 0.99835 0.91667 1.20749 0.98918 0.94651 0.98378 1.20178 1.02390 0.94905 0.95066 1.18184 1.01739 0.87151 0.95338 1.41707 1.54369 1.15129 1.08866 0.74803 1.21967 1.02596 1.00630 0.82840 1.21949 1.06546 0.92764 0.99750 1.18969 1.00608 0.93702 0.93102 1.20614 1.01522 0.92905 1.04152 1.20944 0.98508 0.96512 0.99416 0.91031 0.88240 0.88547 0.92292 0.91269 0.89851 0.90446 0.75865 0.85167 0.84867 0.85905 0.81091 0.82561 0.88738 0.86125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.34 10.96 55.54 0.61 -19.74 16 2 C 0.07 1.85 5.13 -17.34 -0.09 1.76 16 3 Si 0.91 18.45 29.60 -169.99 -5.03 13.42 16 4 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 5 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 6 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 7 C -0.46 -12.08 9.04 -37.83 -0.34 -12.42 16 8 H 0.08 1.95 7.91 -52.49 -0.41 1.54 16 9 C 0.09 2.29 5.57 -106.80 -0.60 1.69 16 10 C -0.20 -4.75 9.74 -39.25 -0.38 -5.13 16 11 C -0.11 -2.52 9.92 -39.83 -0.40 -2.91 16 12 C -0.01 -0.25 6.71 -38.78 -0.26 -0.51 16 13 O -0.33 -6.20 10.07 -18.75 -0.19 -6.39 16 14 C 0.05 0.79 4.86 37.15 0.18 0.97 16 15 C 0.13 1.67 6.06 -4.04 -0.02 1.64 16 16 N -0.72 -9.60 5.45 -61.40 -0.33 -9.93 16 17 C 0.56 8.21 7.76 -12.54 -0.10 8.11 16 18 O -0.54 -9.23 15.09 5.27 0.08 -9.15 16 19 C -0.09 -1.17 5.90 -104.75 -0.62 -1.79 16 20 C -0.10 -1.13 9.53 -39.17 -0.37 -1.50 16 21 C -0.11 -0.98 9.99 -39.63 -0.40 -1.38 16 22 C -0.10 -0.92 10.06 -39.37 -0.40 -1.31 16 23 C 0.08 0.85 7.27 -83.99 -0.61 0.24 16 24 N -0.60 -4.48 6.06 -10.66 -0.06 -4.54 16 25 H 0.42 1.65 8.96 -40.82 -0.37 1.29 16 26 C 0.05 0.37 11.82 -16.76 -0.20 0.17 16 27 C -0.19 -2.16 10.24 -37.78 -0.39 -2.54 16 28 C -0.06 -0.74 6.15 -104.85 -0.64 -1.39 16 29 C -0.17 -3.91 8.96 -39.83 -0.36 -4.26 16 30 C -0.13 -3.40 8.64 -39.25 -0.34 -3.74 16 31 H 0.28 6.45 8.30 -40.82 -0.34 6.11 16 32 H 0.10 2.24 8.06 -52.49 -0.42 1.82 16 33 H 0.10 1.97 8.06 -52.49 -0.42 1.55 16 34 H 0.06 0.85 7.66 -51.93 -0.40 0.45 16 35 H 0.07 0.98 7.64 -51.93 -0.40 0.59 16 36 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 37 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.41 4.97 6.51 -40.82 -0.27 4.70 16 39 H 0.13 1.24 6.40 -52.49 -0.34 0.90 16 40 H 0.13 0.90 8.06 -52.49 -0.42 0.47 16 41 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 42 H 0.17 0.72 8.06 -52.48 -0.42 0.30 16 43 H 0.16 1.94 7.16 -52.49 -0.38 1.56 16 44 H 0.09 1.88 6.27 -52.49 -0.33 1.55 16 45 H 0.12 3.15 6.16 -52.49 -0.32 2.83 16 LS Contribution 381.43 15.07 5.75 5.75 Total: -1.00 -31.93 381.43 -10.81 -42.73 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: -5.30 Total: 12.15 kcal Atomic # 6 Polarization: -17.99 SS G_CDS: -6.32 Total: -24.31 kcal Atomic # 7 Polarization: -34.42 SS G_CDS: 0.21 Total: -34.21 kcal Atomic # 8 Polarization: -15.42 SS G_CDS: -0.11 Total: -15.53 kcal Atomic # 14 Polarization: 18.45 SS G_CDS: -5.03 Total: 13.42 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -31.93 -10.81 -42.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078986434.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.210 kcal (2) G-P(sol) polarization free energy of solvation -31.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.735 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds