Wall clock time and date at job start Tue Mar 31 2020 06:39:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30820 * 1 3 3 Si 1.86802 * 120.00152 * 2 1 4 4 H 1.48496 * 109.47320 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47261 * 300.00266 * 3 2 1 6 6 H 1.48506 * 109.47053 * 59.99777 * 3 2 1 7 7 C 1.39936 * 120.00258 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00252 * 163.54913 * 7 2 1 9 9 C 1.41444 * 119.99489 * 343.54349 * 7 2 1 10 10 C 1.40786 * 120.17196 * 155.11804 * 9 7 2 11 11 C 1.37716 * 120.03882 * 180.02562 * 10 9 7 12 12 C 1.38369 * 120.41199 * 359.70216 * 11 10 9 13 13 C 1.39886 * 120.35677 * 0.55677 * 12 11 10 14 14 C 1.47860 * 120.02683 * 179.74388 * 13 12 11 15 15 O 1.21567 * 120.00341 * 179.71666 * 14 13 12 16 16 N 1.34781 * 119.99695 * 359.72287 * 14 13 12 17 17 C 1.40125 * 119.99738 * 184.42833 * 16 14 13 18 18 C 1.38500 * 120.52568 * 332.58144 * 17 16 14 19 19 N 1.31980 * 120.74071 * 180.28864 * 18 17 16 20 20 C 1.31959 * 121.96011 * 359.71050 * 19 18 17 21 21 C 1.38021 * 120.97647 * 0.02953 * 20 19 18 22 22 C 1.39275 * 119.14150 * 359.97004 * 21 20 19 23 23 N 1.39380 * 120.88686 * 180.02562 * 22 21 20 24 24 C 1.46849 * 111.00110 * 64.21246 * 23 22 21 25 25 C 1.53032 * 109.52854 * 174.16132 * 24 23 22 26 26 C 1.53125 * 109.27525 * 59.17895 * 25 24 23 27 27 C 1.53113 * 109.16165 * 302.34524 * 26 25 24 28 28 C 1.46847 * 111.00263 * 300.00657 * 23 22 21 29 29 C 1.39045 * 119.94933 * 359.46348 * 13 12 11 30 30 H 0.97004 * 119.99823 * 359.97438 * 1 2 3 31 31 H 1.07995 * 119.97967 * 0.02562 * 10 9 7 32 32 H 1.07997 * 119.79043 * 179.97438 * 11 10 9 33 33 H 1.08000 * 119.81853 * 180.29719 * 12 11 10 34 34 H 0.96994 * 120.00055 * 4.42892 * 16 14 13 35 35 H 1.08008 * 119.62853 * 0.02562 * 18 17 16 36 36 H 1.07992 * 119.51634 * 179.97438 * 20 19 18 37 37 H 1.07995 * 120.43050 * 180.02562 * 21 20 19 38 38 H 1.09009 * 109.46135 * 294.17962 * 24 23 22 39 39 H 1.09000 * 109.46165 * 54.14118 * 24 23 22 40 40 H 1.09002 * 109.50540 * 299.24461 * 25 24 23 41 41 H 1.08991 * 109.53739 * 179.13894 * 25 24 23 42 42 H 1.09004 * 109.51743 * 182.44119 * 26 25 24 43 43 H 1.08991 * 109.57473 * 62.28604 * 26 25 24 44 44 H 1.09002 * 109.50563 * 297.71692 * 27 26 25 45 45 H 1.09006 * 109.53740 * 177.61251 * 27 26 25 46 46 H 1.09006 * 109.45725 * 305.85241 * 28 23 22 47 47 H 1.09000 * 109.46553 * 65.82744 * 28 23 22 48 48 H 1.08001 * 120.20347 * 180.23407 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7022 1.3464 -0.0006 5 1 1.8835 2.3965 -1.2125 6 1 1.8835 2.3965 1.2125 7 6 2.0079 -1.2119 -0.0005 8 1 3.0548 -1.2309 -0.2654 9 6 1.3441 -2.4118 0.3459 10 6 1.8230 -3.6478 -0.1285 11 6 1.1743 -4.8144 0.2101 12 6 0.0539 -4.7827 1.0216 13 6 -0.4396 -3.5636 1.4981 14 6 -1.6407 -3.5378 2.3601 15 8 -2.0662 -2.4785 2.7781 16 7 -2.2636 -4.6887 2.6825 17 6 -3.4537 -4.6579 3.4216 18 6 -3.7162 -3.6106 4.2891 19 7 -4.8331 -3.5802 4.9915 20 6 -5.7434 -4.5309 4.8975 21 6 -5.5621 -5.6071 4.0525 22 6 -4.3986 -5.6827 3.2908 23 7 -4.1783 -6.7529 2.4253 24 6 -5.1749 -6.7713 1.3469 25 6 -4.8179 -7.8664 0.3392 26 6 -4.7868 -9.2203 1.0539 27 6 -3.7763 -9.1590 2.2026 28 6 -4.1635 -8.0264 3.1563 29 6 0.2035 -2.3766 1.1652 30 1 -0.4850 0.8401 0.0004 31 1 2.6996 -3.6810 -0.7584 32 1 1.5448 -5.7603 -0.1564 33 1 -0.4446 -5.7038 1.2851 34 1 -1.8881 -5.5382 2.4029 35 1 -2.9968 -2.8120 4.3951 36 1 -6.6432 -4.4665 5.4912 37 1 -6.3131 -6.3800 3.9822 38 1 -6.1607 -6.9715 1.7668 39 1 -5.1840 -5.8042 0.8442 40 1 -3.8381 -7.6595 -0.0912 41 1 -5.5659 -7.8904 -0.4532 42 1 -4.4906 -9.9973 0.3492 43 1 -5.7763 -9.4465 1.4509 44 1 -2.7801 -8.9724 1.8015 45 1 -3.7799 -10.1062 2.7422 46 1 -3.4378 -7.9709 3.9678 47 1 -5.1540 -8.2208 3.5675 48 1 -0.1718 -1.4334 1.5339 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079041096.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:52 Heat of formation + Delta-G solvation = 23.929997 kcal Electronic energy + Delta-G solvation = -30656.214624 eV Core-core repulsion = 26675.258394 eV Total energy + Delta-G solvation = -3980.956229 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 351.169 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.03110 -39.39376 -38.48053 -37.11780 -34.93177 -34.01219 -33.72279 -31.12486 -30.85263 -30.31184 -29.53627 -28.97281 -25.40505 -25.04928 -23.98557 -23.33715 -22.43056 -21.79647 -20.99183 -19.93504 -19.67785 -18.07426 -17.59275 -17.14113 -16.46029 -15.77456 -15.40220 -15.20653 -15.11868 -14.71959 -14.61012 -14.47516 -14.08406 -13.93195 -13.77692 -13.71823 -13.33635 -13.27264 -13.22463 -12.77963 -12.61081 -12.51439 -12.38251 -11.71065 -11.49650 -11.24000 -11.13398 -11.02520 -10.83136 -10.78017 -10.74111 -10.62185 -10.50918 -10.07576 -9.75802 -9.52305 -9.37315 -9.27723 -9.13276 -8.76041 -8.06707 -7.67938 -7.57558 -6.83549 -4.46468 1.13578 1.18318 2.12353 2.76137 3.06450 3.10552 3.11964 3.35022 3.49306 3.63725 3.89104 3.95241 4.49876 4.57488 4.59971 4.63074 4.69495 4.84122 4.95368 4.98737 5.08685 5.12793 5.25695 5.30264 5.42332 5.49452 5.53746 5.58158 5.60961 5.63703 5.77612 5.83205 5.88260 5.95726 6.02626 6.05548 6.15455 6.21547 6.45883 6.65298 6.68773 6.83656 6.91310 6.94271 7.15095 7.20214 7.30557 7.61133 7.66518 7.83111 7.94390 8.09264 8.12175 8.44387 8.66452 8.76151 8.77884 10.10669 Molecular weight = 351.17amu Principal moments of inertia in cm(-1) A = 0.012756 B = 0.002929 C = 0.002531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2194.555310 B = 9557.390403 C =11061.582853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.784 5.784 2 C 0.072 3.928 3 Si 0.911 3.089 4 H -0.260 1.260 5 H -0.274 1.274 6 H -0.270 1.270 7 C -0.458 4.458 8 H 0.082 0.918 9 C 0.098 3.902 10 C -0.208 4.208 11 C -0.096 4.096 12 C -0.215 4.215 13 C -0.129 4.129 14 C 0.564 3.436 15 O -0.525 6.525 16 N -0.657 5.657 17 C 0.139 3.861 18 C 0.090 3.910 19 N -0.466 5.466 20 C 0.072 3.928 21 C -0.183 4.183 22 C 0.089 3.911 23 N -0.499 5.499 24 C 0.064 3.936 25 C -0.118 4.118 26 C -0.121 4.121 27 C -0.118 4.118 28 C 0.059 3.941 29 C -0.087 4.087 30 H 0.285 0.715 31 H 0.097 0.903 32 H 0.094 0.906 33 H 0.091 0.909 34 H 0.418 0.582 35 H 0.186 0.814 36 H 0.151 0.849 37 H 0.129 0.871 38 H 0.038 0.962 39 H 0.077 0.923 40 H 0.076 0.924 41 H 0.069 0.931 42 H 0.065 0.935 43 H 0.057 0.943 44 H 0.075 0.925 45 H 0.068 0.932 46 H 0.076 0.924 47 H 0.038 0.962 48 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.266 -15.559 4.145 19.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.408 5.408 2 C -0.147 4.147 3 Si 0.735 3.265 4 H -0.183 1.183 5 H -0.199 1.199 6 H -0.195 1.195 7 C -0.486 4.486 8 H 0.100 0.900 9 C 0.095 3.905 10 C -0.228 4.228 11 C -0.115 4.115 12 C -0.235 4.235 13 C -0.132 4.132 14 C 0.358 3.642 15 O -0.402 6.402 16 N -0.301 5.301 17 C 0.038 3.962 18 C -0.070 4.070 19 N -0.175 5.175 20 C -0.086 4.086 21 C -0.206 4.206 22 C -0.016 4.016 23 N -0.220 5.220 24 C -0.062 4.062 25 C -0.156 4.156 26 C -0.158 4.158 27 C -0.155 4.155 28 C -0.067 4.067 29 C -0.107 4.107 30 H 0.096 0.904 31 H 0.115 0.885 32 H 0.112 0.888 33 H 0.109 0.891 34 H 0.257 0.743 35 H 0.203 0.797 36 H 0.168 0.832 37 H 0.147 0.853 38 H 0.056 0.944 39 H 0.096 0.904 40 H 0.095 0.905 41 H 0.087 0.913 42 H 0.084 0.916 43 H 0.076 0.924 44 H 0.094 0.906 45 H 0.087 0.913 46 H 0.094 0.906 47 H 0.057 0.943 48 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -10.380 -13.878 4.690 17.954 hybrid contribution -0.320 -0.647 -0.522 0.891 sum -10.700 -14.525 4.167 18.516 Atomic orbital electron populations 1.69775 1.07557 1.29754 1.33705 1.25971 0.94805 1.01606 0.92286 0.86218 0.80834 0.80748 0.78735 1.18335 1.19903 1.19502 1.19635 0.97767 0.90820 1.40424 0.89981 1.17599 0.91233 0.92532 0.89126 1.21132 1.03164 0.92824 1.05677 1.20429 0.95881 0.96786 0.98369 1.20348 1.01042 0.94599 1.07510 1.19300 0.95876 0.95655 1.02400 1.19121 0.83650 0.82186 0.79289 1.90639 1.65700 1.30448 1.53446 1.43525 1.22150 1.11114 1.53315 1.18950 0.87719 0.95921 0.93580 1.23577 0.95285 0.97869 0.90317 1.67834 1.01837 1.26139 1.21682 1.22524 0.98446 0.90113 0.97492 1.22382 0.98079 1.00733 0.99390 1.18759 0.92542 0.94156 0.96158 1.59264 1.50316 1.01451 1.11003 1.22135 0.91987 1.00292 0.91836 1.21611 1.02967 0.93776 0.97242 1.21580 0.99144 0.97431 0.97690 1.21608 1.00302 0.97155 0.96475 1.22185 1.00466 0.88006 0.96050 1.21682 0.96167 0.96270 0.96607 0.90413 0.88514 0.88781 0.89079 0.74349 0.79735 0.83162 0.85347 0.94381 0.90406 0.90531 0.91255 0.91618 0.92391 0.90646 0.91322 0.90560 0.94337 0.84566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.36 10.90 55.55 0.61 -19.75 16 2 C 0.07 1.79 5.17 -17.35 -0.09 1.70 16 3 Si 0.91 18.49 29.59 -169.99 -5.03 13.46 16 4 H -0.26 -5.17 7.11 56.52 0.40 -4.76 16 5 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 6 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 7 C -0.46 -11.74 9.06 -37.73 -0.34 -12.08 16 8 H 0.08 2.00 7.90 -52.49 -0.41 1.59 16 9 C 0.10 2.51 5.57 -106.87 -0.60 1.91 16 10 C -0.21 -4.78 9.78 -38.81 -0.38 -5.16 16 11 C -0.10 -1.98 10.01 -39.72 -0.40 -2.38 16 12 C -0.21 -4.36 9.55 -38.92 -0.37 -4.73 16 13 C -0.13 -2.94 5.87 -105.04 -0.62 -3.55 16 14 C 0.56 11.96 7.66 -12.32 -0.09 11.86 16 15 O -0.53 -12.43 13.37 5.31 0.07 -12.36 16 16 N -0.66 -11.24 5.22 -10.46 -0.05 -11.29 16 17 C 0.14 2.25 6.47 -83.31 -0.54 1.71 16 18 C 0.09 1.57 9.95 -17.39 -0.17 1.40 16 19 N -0.47 -7.52 10.35 -13.18 -0.14 -7.66 16 20 C 0.07 0.92 11.17 -17.58 -0.20 0.72 16 21 C -0.18 -2.14 8.81 -39.28 -0.35 -2.48 16 22 C 0.09 1.18 4.71 -83.38 -0.39 0.79 16 23 N -0.50 -5.64 4.12 -170.77 -0.70 -6.34 16 24 C 0.06 0.66 5.18 -3.84 -0.02 0.64 16 25 C -0.12 -1.03 6.09 -26.65 -0.16 -1.20 16 26 C -0.12 -0.89 6.00 -26.61 -0.16 -1.05 16 27 C -0.12 -0.91 6.09 -26.65 -0.16 -1.08 16 28 C 0.06 0.54 5.13 -3.83 -0.02 0.52 16 29 C -0.09 -2.25 8.23 -38.44 -0.32 -2.57 16 30 H 0.28 6.81 8.30 -40.82 -0.34 6.47 16 31 H 0.10 2.07 8.06 -52.49 -0.42 1.65 16 32 H 0.09 1.64 8.06 -52.49 -0.42 1.21 16 33 H 0.09 1.55 6.39 -52.49 -0.34 1.21 16 34 H 0.42 6.41 6.46 -40.82 -0.26 6.14 16 35 H 0.19 3.60 5.65 -52.48 -0.30 3.31 16 36 H 0.15 1.44 8.06 -52.49 -0.42 1.02 16 37 H 0.13 1.17 7.30 -52.49 -0.38 0.79 16 38 H 0.04 0.36 7.63 -51.92 -0.40 -0.04 16 39 H 0.08 0.94 8.11 -51.93 -0.42 0.52 16 40 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.08 0.73 8.11 -51.93 -0.42 0.31 16 47 H 0.04 0.33 7.41 -51.93 -0.39 -0.06 16 48 H 0.14 3.80 5.71 -52.49 -0.30 3.50 16 LS Contribution 387.36 15.07 5.84 5.84 Total: -1.00 -28.37 387.36 -11.34 -39.71 By element: Atomic # 1 Polarization: 19.96 SS G_CDS: -6.56 Total: 13.41 kcal Atomic # 6 Polarization: -9.64 SS G_CDS: -5.37 Total: -15.02 kcal Atomic # 7 Polarization: -44.75 SS G_CDS: -0.29 Total: -45.04 kcal Atomic # 8 Polarization: -12.43 SS G_CDS: 0.07 Total: -12.36 kcal Atomic # 14 Polarization: 18.49 SS G_CDS: -5.03 Total: 13.46 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -28.37 -11.34 -39.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079041096.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.643 kcal (2) G-P(sol) polarization free energy of solvation -28.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds