Wall clock time and date at job start Tue Mar 31 2020 05:47:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34326 * 126.44451 * 2 1 4 4 N 1.34479 * 107.66930 * 179.72569 * 3 2 1 5 5 C 1.30249 * 108.70071 * 0.42995 * 4 3 2 6 6 C 1.50699 * 125.61900 * 179.83922 * 5 4 3 7 7 N 1.46895 * 109.47642 * 89.68892 * 6 5 4 8 8 C 1.46903 * 111.00138 * 66.04253 * 7 6 5 9 9 C 1.46894 * 111.00395 * 189.99965 * 7 6 5 10 10 H 1.09002 * 110.64692 * 298.29933 * 9 7 6 11 11 C 1.54596 * 110.72523 * 61.45606 * 9 7 6 12 12 C 1.53989 * 105.14146 * 140.49237 * 11 9 7 13 13 N 1.47897 * 107.05997 * 1.22653 * 12 11 9 14 14 C 1.46900 * 111.00012 * 214.15446 * 13 12 11 15 15 C 1.50695 * 109.47273 * 176.63546 * 14 13 12 16 16 O 1.21278 * 119.99986 * 6.14183 * 15 14 13 17 17 N 1.34777 * 119.99971 * 186.13379 * 15 14 13 18 18 C 1.46503 * 120.00324 * 0.02562 * 17 15 14 19 19 C 1.46504 * 119.99773 * 180.02562 * 17 15 14 20 20 C 1.50704 * 109.46937 * 90.00381 * 19 17 15 21 21 H 1.08004 * 120.00086 * 359.97438 * 20 19 17 22 22 C 1.37878 * 119.99803 * 179.97438 * 20 19 17 23 23 N 1.31516 * 119.99785 * 179.97438 * 22 20 19 24 24 Si 1.86794 * 120.00040 * 0.02562 * 22 20 19 25 25 H 1.48498 * 109.47426 * 89.99565 * 24 22 20 26 26 H 1.48508 * 109.46926 * 209.99685 * 24 22 20 27 27 H 1.48498 * 109.47065 * 329.99381 * 24 22 20 28 28 C 1.48530 * 105.81852 * 334.66855 * 13 12 11 29 29 O 1.33972 * 108.76212 * 359.56848 * 5 4 3 30 30 H 1.09001 * 109.47193 * 270.01668 * 1 2 3 31 31 H 1.08996 * 109.47182 * 30.02417 * 1 2 3 32 32 H 1.09008 * 109.47288 * 150.02334 * 1 2 3 33 33 H 1.08003 * 126.16593 * 359.97438 * 3 2 1 34 34 H 1.09006 * 109.47320 * 329.68514 * 6 5 4 35 35 H 1.09007 * 109.47180 * 209.69185 * 6 5 4 36 36 H 1.08993 * 109.47250 * 183.95408 * 8 7 6 37 37 H 1.09000 * 109.47114 * 303.95872 * 8 7 6 38 38 H 1.09004 * 109.46627 * 63.95777 * 8 7 6 39 39 H 1.08995 * 110.30743 * 21.57302 * 11 9 7 40 40 H 1.08999 * 110.30516 * 259.41270 * 11 9 7 41 41 H 1.09000 * 109.91852 * 241.86729 * 12 11 9 42 42 H 1.09006 * 110.08048 * 120.66737 * 12 11 9 43 43 H 1.09001 * 109.47097 * 56.63605 * 14 13 12 44 44 H 1.09002 * 109.47406 * 296.64048 * 14 13 12 45 45 H 1.08999 * 109.47021 * 89.99690 * 18 17 15 46 46 H 1.08993 * 109.47392 * 209.99920 * 18 17 15 47 47 H 1.08996 * 109.46571 * 329.99962 * 18 17 15 48 48 H 1.09000 * 109.47147 * 210.00026 * 19 17 15 49 49 H 1.08995 * 109.47407 * 330.00592 * 19 17 15 50 50 H 0.96997 * 119.99791 * 180.02562 * 23 22 20 51 51 H 1.09001 * 110.66783 * 157.64509 * 28 13 12 52 52 H 1.09005 * 110.66576 * 280.77430 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3049 1.0806 0.0000 4 7 3.5782 0.6477 0.0061 5 6 3.5765 -0.6547 0.0006 6 6 4.8004 -1.5340 0.0011 7 7 5.1978 -1.8195 1.3861 8 6 4.1826 -2.6334 2.0680 9 6 6.5134 -2.4714 1.4327 10 1 6.4871 -3.4277 0.9104 11 6 7.6016 -1.5508 0.8342 12 6 8.8320 -1.7407 1.7404 13 7 8.4630 -2.7361 2.7701 14 6 9.1173 -2.4360 4.0507 15 6 8.6544 -3.4200 5.0940 16 8 7.9461 -4.3519 4.7767 17 7 9.0277 -3.2645 6.3797 18 6 9.8830 -2.1385 6.7631 19 6 8.5781 -4.2214 7.3938 20 6 9.5774 -5.3443 7.5029 21 1 10.4589 -5.3452 6.8789 22 6 9.3662 -6.3703 8.3993 23 7 10.2379 -7.3505 8.4941 24 14 7.8412 -6.3690 9.4780 25 1 6.7415 -7.0837 8.7815 26 1 8.1419 -7.0537 10.7611 27 1 7.4279 -4.9688 9.7492 28 6 6.9851 -2.6590 2.8965 29 8 2.3074 -1.0840 0.0003 30 1 -0.3633 0.0003 1.0277 31 1 -0.3633 0.8897 -0.5142 32 1 -0.3634 -0.8902 -0.5135 33 1 1.9822 2.1112 -0.0004 34 1 5.6150 -1.0232 -0.5127 35 1 4.5764 -2.4689 -0.5128 36 1 4.4677 -2.7711 3.1109 37 1 3.2182 -2.1276 2.0186 38 1 4.1085 -3.6054 1.5802 39 1 7.2723 -0.5120 0.8561 40 1 7.8334 -1.8534 -0.1870 41 1 9.0933 -0.7948 2.2149 42 1 9.6751 -2.1074 1.1548 43 1 8.8567 -1.4250 4.3638 44 1 10.1983 -2.5126 3.9332 45 1 9.2610 -1.2844 7.0308 46 1 10.4968 -2.4230 7.6177 47 1 10.5275 -1.8704 5.9260 48 1 8.4918 -3.7171 8.3563 49 1 7.6074 -4.6256 7.1070 50 1 10.0891 -8.0725 9.1245 51 1 6.5860 -3.5834 3.3139 52 1 6.6953 -1.8035 3.5068 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084258666.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:01 Heat of formation + Delta-G solvation = 22.617920 kcal Electronic energy + Delta-G solvation = -31294.841847 eV Core-core repulsion = 27104.238464 eV Total energy + Delta-G solvation = -4190.603383 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 350.211 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -43.62217 -39.91366 -38.65258 -36.58082 -34.99248 -34.84046 -33.01807 -32.55656 -31.54352 -29.82365 -28.79200 -27.95936 -26.92389 -26.07403 -25.42105 -24.04464 -22.44890 -22.18883 -21.30874 -20.84710 -20.21108 -18.46926 -17.34954 -17.23801 -16.94326 -16.70033 -16.35657 -15.63136 -15.38137 -15.30324 -15.01771 -14.90196 -14.44724 -14.28023 -13.91993 -13.71848 -13.56203 -13.43921 -13.20283 -13.07627 -12.85964 -12.74164 -12.48568 -12.40282 -12.21142 -12.14864 -11.97413 -11.95450 -11.60449 -11.46010 -11.33793 -11.28916 -10.93416 -10.88025 -10.82327 -10.77433 -10.51342 -10.12281 -9.51554 -9.03782 -8.94494 -8.69004 -8.57323 -8.29467 -7.66853 -6.06855 -4.05362 1.09143 2.26031 2.40208 3.29874 3.35638 3.36802 3.37520 3.45758 3.69596 3.80383 4.31264 4.38204 4.40889 4.43701 4.59539 4.65066 4.66665 4.88090 4.94256 4.96693 5.03707 5.07825 5.16695 5.22387 5.26485 5.27961 5.30856 5.38335 5.49104 5.51897 5.54541 5.63762 5.68949 5.71722 5.73301 5.79502 5.84497 5.90757 5.96227 6.00245 6.15365 6.19631 6.59698 6.64939 6.67920 6.91315 6.98394 7.03595 7.36572 7.47240 7.62839 8.26824 8.49187 8.95763 9.02902 9.53398 11.06594 Molecular weight = 350.21amu Principal moments of inertia in cm(-1) A = 0.014305 B = 0.002131 C = 0.001962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1956.919479 B =13137.574319 C =14266.635523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.051 4.051 3 C -0.044 4.044 4 N -0.465 5.465 5 C 0.200 3.800 6 C 0.150 3.850 7 N -0.529 5.529 8 C 0.019 3.981 9 C 0.080 3.920 10 H 0.064 0.936 11 C -0.127 4.127 12 C 0.038 3.962 13 N -0.497 5.497 14 C 0.032 3.968 15 C 0.508 3.492 16 O -0.525 6.525 17 N -0.600 5.600 18 C 0.084 3.916 19 C 0.217 3.783 20 C -0.527 4.527 21 H 0.074 0.926 22 C 0.071 3.929 23 N -0.897 5.897 24 Si 0.877 3.123 25 H -0.274 1.274 26 H -0.285 1.285 27 H -0.266 1.266 28 C 0.047 3.953 29 O -0.203 6.203 30 H 0.084 0.916 31 H 0.091 0.909 32 H 0.077 0.923 33 H 0.182 0.818 34 H 0.118 0.882 35 H 0.065 0.935 36 H 0.080 0.920 37 H 0.064 0.936 38 H 0.035 0.965 39 H 0.082 0.918 40 H 0.072 0.928 41 H 0.046 0.954 42 H 0.081 0.919 43 H 0.057 0.943 44 H 0.102 0.898 45 H 0.044 0.956 46 H 0.076 0.924 47 H 0.059 0.941 48 H 0.029 0.971 49 H 0.036 0.964 50 H 0.264 0.736 51 H 0.104 0.896 52 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.208 18.553 -18.645 29.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.104 4.104 3 C -0.183 4.183 4 N -0.194 5.194 5 C -0.008 4.008 6 C 0.021 3.979 7 N -0.255 5.255 8 C -0.129 4.129 9 C -0.029 4.029 10 H 0.082 0.918 11 C -0.165 4.165 12 C -0.090 4.090 13 N -0.222 5.222 14 C -0.100 4.100 15 C 0.293 3.707 16 O -0.401 6.401 17 N -0.333 5.333 18 C -0.060 4.060 19 C 0.097 3.903 20 C -0.566 4.566 21 H 0.093 0.907 22 C -0.131 4.131 23 N -0.536 5.536 24 Si 0.704 3.296 25 H -0.199 1.199 26 H -0.211 1.211 27 H -0.191 1.191 28 C -0.080 4.080 29 O -0.090 6.090 30 H 0.103 0.897 31 H 0.110 0.890 32 H 0.096 0.904 33 H 0.199 0.801 34 H 0.136 0.864 35 H 0.083 0.917 36 H 0.098 0.902 37 H 0.082 0.918 38 H 0.053 0.947 39 H 0.100 0.900 40 H 0.091 0.909 41 H 0.065 0.935 42 H 0.099 0.901 43 H 0.075 0.925 44 H 0.120 0.880 45 H 0.062 0.938 46 H 0.095 0.905 47 H 0.077 0.923 48 H 0.047 0.953 49 H 0.054 0.946 50 H 0.074 0.926 51 H 0.122 0.878 52 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -13.786 18.108 -18.578 29.378 hybrid contribution -1.504 -0.292 0.616 1.651 sum -15.290 17.815 -17.962 29.560 Atomic orbital electron populations 1.20273 0.84034 1.04308 1.03878 1.23485 0.95059 0.84684 1.07161 1.23104 0.87883 1.00333 1.06981 1.70424 1.22837 1.09156 1.17008 1.25997 0.83791 0.90288 1.00696 1.20415 0.89583 0.96167 0.91685 1.62008 1.02928 1.47199 1.13318 1.22494 0.94801 0.95352 1.00248 1.22610 0.86815 0.95714 0.97723 0.91795 1.22520 0.94234 1.00634 0.99103 1.22864 0.98065 0.94154 0.93946 1.64545 1.05979 1.45996 1.05633 1.22245 1.00989 0.97075 0.89659 1.20137 0.81465 0.86212 0.82838 1.90631 1.37570 1.32072 1.79789 1.47842 1.49800 1.27629 1.08069 1.21655 0.94242 0.88634 1.01519 1.19640 0.96610 0.88272 0.85820 1.21336 1.07974 1.05263 1.22002 0.90746 1.24868 0.96331 0.95061 0.96848 1.69900 1.35716 1.11137 1.36841 0.86844 0.83890 0.78709 0.80186 1.19936 1.21096 1.19118 1.23335 0.87690 1.02685 0.94330 1.84408 1.17997 1.36691 1.69871 0.89733 0.88991 0.90377 0.80073 0.86375 0.91720 0.90153 0.91769 0.94666 0.89972 0.90944 0.93530 0.90069 0.92475 0.87968 0.93754 0.90483 0.92254 0.95322 0.94637 0.92597 0.87765 0.93244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.31 10.43 36.00 0.38 0.06 16 2 C -0.05 -0.44 7.39 -35.69 -0.26 -0.71 16 3 C -0.04 -0.42 11.80 -17.77 -0.21 -0.63 16 4 N -0.47 -5.60 11.29 -11.10 -0.13 -5.73 16 5 C 0.20 2.21 6.92 -12.95 -0.09 2.12 16 6 C 0.15 1.40 5.44 -4.98 -0.03 1.38 16 7 N -0.53 -5.78 4.59 -234.09 -1.07 -6.85 16 8 C 0.02 0.21 9.18 60.07 0.55 0.76 16 9 C 0.08 0.90 2.74 -65.85 -0.18 0.72 16 10 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 11 C -0.13 -1.21 5.31 -25.38 -0.13 -1.35 16 12 C 0.04 0.41 6.70 -2.76 -0.02 0.39 16 13 N -0.50 -7.29 5.11 -231.90 -1.18 -8.47 16 14 C 0.03 0.48 3.77 -4.98 -0.02 0.46 16 15 C 0.51 10.34 7.31 -10.99 -0.08 10.25 16 16 O -0.52 -12.75 13.87 5.56 0.08 -12.67 16 17 N -0.60 -12.40 2.86 -182.96 -0.52 -12.92 16 18 C 0.08 1.28 10.13 59.85 0.61 1.88 16 19 C 0.22 5.35 4.23 -5.19 -0.02 5.33 16 20 C -0.53 -15.28 9.94 -34.44 -0.34 -15.63 16 21 H 0.07 2.37 8.06 -52.48 -0.42 1.95 16 22 C 0.07 2.09 5.47 -17.82 -0.10 2.00 16 23 N -0.90 -27.89 13.96 55.43 0.77 -27.12 16 24 Si 0.88 21.73 27.47 -169.99 -4.67 17.06 16 25 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 26 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 27 H -0.27 -6.21 6.54 56.52 0.37 -5.84 16 28 C 0.05 0.68 3.98 -1.90 -0.01 0.67 16 29 O -0.20 -2.18 10.05 5.35 0.05 -2.13 16 30 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.08 0.32 8.14 -51.92 -0.42 -0.10 16 33 H 0.18 1.19 8.06 -52.48 -0.42 0.77 16 34 H 0.12 0.97 6.74 -51.93 -0.35 0.62 16 35 H 0.06 0.52 8.12 -51.93 -0.42 0.10 16 36 H 0.08 0.96 7.09 -51.93 -0.37 0.59 16 37 H 0.06 0.71 6.60 -51.93 -0.34 0.37 16 38 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.08 0.79 7.79 -51.93 -0.40 0.38 16 40 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.05 0.46 7.68 -51.93 -0.40 0.06 16 42 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 43 H 0.06 0.73 7.77 -51.93 -0.40 0.33 16 44 H 0.10 1.40 7.71 -51.93 -0.40 1.00 16 45 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.08 1.22 8.07 -51.93 -0.42 0.80 16 47 H 0.06 0.74 6.61 -51.93 -0.34 0.40 16 48 H 0.03 0.67 7.13 -51.93 -0.37 0.30 16 49 H 0.04 0.93 6.85 -51.93 -0.36 0.58 16 50 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 51 H 0.10 1.81 6.29 -51.93 -0.33 1.49 16 52 H 0.05 0.73 8.01 -51.93 -0.42 0.31 16 LS Contribution 412.71 15.07 6.22 6.22 Total: -1.00 -36.61 412.71 -9.13 -45.74 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -8.72 Total: -0.85 kcal Atomic # 6 Polarization: 7.68 SS G_CDS: 0.04 Total: 7.72 kcal Atomic # 7 Polarization: -58.96 SS G_CDS: -2.13 Total: -61.09 kcal Atomic # 8 Polarization: -14.93 SS G_CDS: 0.13 Total: -14.80 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.67 Total: 17.06 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -36.61 -9.13 -45.74 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084258666.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.358 kcal (2) G-P(sol) polarization free energy of solvation -36.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.740 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds