Wall clock time and date at job start Tue Mar 31 2020 05:44:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46501 * 109.47186 * 2 1 4 4 C 1.46497 * 120.00007 * 85.20585 * 3 2 1 5 5 C 1.50698 * 109.46959 * 83.64373 * 4 3 2 6 6 H 1.08002 * 120.00280 * 359.97438 * 5 4 3 7 7 C 1.37881 * 120.00002 * 179.97438 * 5 4 3 8 8 N 1.31517 * 119.99982 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 120.00031 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47181 * 60.00241 * 9 7 5 11 11 H 1.48500 * 109.47050 * 180.02562 * 9 7 5 12 12 H 1.48508 * 109.46744 * 299.99824 * 9 7 5 13 13 C 1.34780 * 119.99855 * 265.21164 * 3 2 1 14 14 O 1.21586 * 119.99639 * 2.82381 * 13 3 2 15 15 C 1.47594 * 119.99876 * 182.82692 * 13 3 2 16 16 C 1.39742 * 120.06520 * 43.99996 * 15 13 3 17 17 C 1.37701 * 119.96679 * 179.97438 * 16 15 13 18 18 C 1.39074 * 120.10219 * 359.97438 * 17 16 15 19 19 N 1.39547 * 119.93396 * 180.02562 * 18 17 16 20 20 C 1.34774 * 120.00193 * 31.45830 * 19 18 17 21 21 O 1.21288 * 119.99968 * 5.53783 * 20 19 18 22 22 C 1.50699 * 120.00109 * 185.54317 * 20 19 18 23 23 C 1.52999 * 109.47002 * 179.97438 * 22 20 19 24 24 C 1.53003 * 109.47195 * 65.00079 * 23 22 20 25 25 C 1.53002 * 109.47043 * 184.99961 * 23 22 20 26 26 C 1.39307 * 120.13125 * 0.02562 * 18 17 16 27 27 F 1.35100 * 119.98209 * 179.97438 * 26 18 17 28 28 C 1.37874 * 120.02950 * 359.70174 * 26 18 17 29 29 H 1.09000 * 109.47087 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47563 * 300.00380 * 1 2 3 31 31 H 1.09003 * 109.47124 * 60.00058 * 1 2 3 32 32 H 1.08995 * 109.47350 * 239.99653 * 2 1 3 33 33 H 1.09003 * 109.47124 * 119.99942 * 2 1 3 34 34 H 1.09009 * 109.46919 * 203.63888 * 4 3 2 35 35 H 1.08992 * 109.47428 * 323.64084 * 4 3 2 36 36 H 0.97001 * 119.99848 * 180.02562 * 8 7 5 37 37 H 1.07999 * 120.01912 * 359.97438 * 16 15 13 38 38 H 1.08000 * 119.94970 * 179.97438 * 17 16 15 39 39 H 0.97004 * 119.99497 * 211.45632 * 19 18 17 40 40 H 1.08999 * 109.47023 * 299.99925 * 22 20 19 41 41 H 1.09000 * 109.46981 * 59.99739 * 22 20 19 42 42 H 1.09001 * 109.47282 * 305.00025 * 23 22 20 43 43 H 1.09001 * 109.47049 * 59.99804 * 24 23 22 44 44 H 1.08993 * 109.46975 * 180.02562 * 24 23 22 45 45 H 1.09000 * 109.46726 * 300.00142 * 24 23 22 46 46 H 1.08996 * 109.47109 * 60.00121 * 25 23 22 47 47 H 1.08998 * 109.46739 * 180.02562 * 25 23 22 48 48 H 1.09001 * 109.47134 * 300.00156 * 25 23 22 49 49 H 1.08001 * 120.04775 * 180.29674 * 28 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1625 2.1072 1.2643 5 6 3.4870 1.7608 1.8941 6 1 4.1544 1.0687 1.4021 7 6 3.8468 2.3273 3.0985 8 7 3.0339 3.1697 3.6979 9 14 5.4889 1.8985 3.8790 10 1 6.5895 2.2824 2.9590 11 1 5.6351 2.6342 5.1606 12 1 5.5472 0.4373 4.1381 13 6 2.3348 1.9841 -1.1632 14 8 2.1666 1.3998 -2.2161 15 6 2.8856 3.3534 -1.1587 16 6 3.8765 3.7064 -0.2387 17 6 4.3894 4.9843 -0.2367 18 6 3.9231 5.9245 -1.1493 19 7 4.4457 7.2184 -1.1445 20 6 5.7272 7.4263 -0.7827 21 8 6.4548 6.4821 -0.5584 22 6 6.2561 8.8317 -0.6566 23 6 7.7265 8.7875 -0.2358 24 6 8.5558 8.1411 -1.3473 25 6 8.2287 10.2111 0.0131 26 6 2.9355 5.5771 -2.0683 27 9 2.4844 6.4929 -2.9531 28 6 2.4221 4.2975 -2.0788 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 2.1200 3.1797 1.0742 35 1 1.3544 1.8254 1.9392 36 1 3.2872 3.5685 4.5451 37 1 4.2399 2.9773 0.4704 38 1 5.1548 5.2570 0.4747 39 1 3.8865 7.9682 -1.4016 40 1 6.1676 9.3407 -1.6164 41 1 5.6795 9.3709 0.0950 42 1 7.8253 8.2023 0.6784 43 1 8.4569 8.7263 -2.2616 44 1 9.6032 8.1092 -1.0474 45 1 8.1979 7.1269 -1.5246 46 1 7.6380 10.6716 0.8049 47 1 9.2763 10.1796 0.3124 48 1 8.1299 10.7964 -0.9012 49 1 1.6599 4.0265 -2.7943 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084408801.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:54 Heat of formation + Delta-G solvation = -101.780821 kcal Electronic energy + Delta-G solvation = -31669.283003 eV Core-core repulsion = 27317.532230 eV Total energy + Delta-G solvation = -4351.750773 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 350.179 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -48.69839 -40.57696 -39.54363 -37.73521 -35.82239 -35.32747 -34.68882 -32.89917 -31.00398 -30.37314 -29.49326 -27.91307 -27.25776 -27.18920 -24.12648 -23.17894 -22.55746 -22.13784 -20.89240 -19.98250 -19.00262 -17.92205 -17.18263 -17.06531 -16.52299 -16.23006 -15.68341 -15.54083 -15.40579 -15.26647 -14.82313 -14.51063 -14.28366 -14.12276 -13.92047 -13.62342 -13.56288 -13.11914 -12.76541 -12.56231 -12.52379 -12.34651 -12.22408 -12.09885 -12.02959 -11.91540 -11.60486 -11.40659 -11.32159 -11.09951 -11.02201 -10.94499 -10.86336 -10.81778 -10.47545 -10.31769 -10.09222 -9.83275 -9.69312 -9.18799 -8.65715 -8.42393 -7.88723 -7.74565 -6.28480 -4.36225 1.16062 1.62130 2.53023 2.93507 3.20744 3.25818 3.28226 3.35338 3.79597 4.14261 4.26859 4.44992 4.45988 4.57327 4.70008 4.99945 5.04310 5.08832 5.24361 5.28157 5.32586 5.42341 5.50928 5.57881 5.64843 5.67291 5.70870 5.74693 5.80881 5.81768 5.89065 5.96340 6.17572 6.19997 6.26872 6.29072 6.35510 6.43999 6.47951 6.64239 6.73898 6.87760 6.92617 7.15453 7.25862 7.34675 7.48739 7.65658 7.94838 8.05763 8.26316 8.68035 8.91485 9.29880 10.76691 Molecular weight = 350.18amu Principal moments of inertia in cm(-1) A = 0.009411 B = 0.003703 C = 0.002857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2974.497149 B = 7559.342383 C = 9798.030235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.114 3.886 3 N -0.587 5.587 4 C 0.230 3.770 5 C -0.547 4.547 6 H 0.066 0.934 7 C 0.073 3.927 8 N -0.879 5.879 9 Si 0.890 3.110 10 H -0.271 1.271 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.559 3.441 14 O -0.568 6.568 15 C -0.113 4.113 16 C -0.056 4.056 17 C -0.106 4.106 18 C 0.129 3.871 19 N -0.671 5.671 20 C 0.511 3.489 21 O -0.507 6.507 22 C -0.135 4.135 23 C -0.083 4.083 24 C -0.155 4.155 25 C -0.147 4.147 26 C 0.044 3.956 27 F -0.145 7.145 28 C -0.089 4.089 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.052 0.948 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.046 0.954 35 H 0.036 0.964 36 H 0.268 0.732 37 H 0.186 0.814 38 H 0.146 0.854 39 H 0.410 0.590 40 H 0.095 0.905 41 H 0.097 0.903 42 H 0.081 0.919 43 H 0.047 0.953 44 H 0.053 0.947 45 H 0.075 0.925 46 H 0.055 0.945 47 H 0.058 0.942 48 H 0.054 0.946 49 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.975 11.776 -6.374 13.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.009 4.009 3 N -0.316 5.316 4 C 0.110 3.890 5 C -0.585 4.585 6 H 0.084 0.916 7 C -0.133 4.133 8 N -0.516 5.516 9 Si 0.717 3.283 10 H -0.196 1.196 11 H -0.210 1.210 12 H -0.199 1.199 13 C 0.347 3.653 14 O -0.450 6.450 15 C -0.117 4.117 16 C -0.074 4.074 17 C -0.126 4.126 18 C 0.034 3.966 19 N -0.316 5.316 20 C 0.299 3.701 21 O -0.381 6.381 22 C -0.175 4.175 23 C -0.102 4.102 24 C -0.212 4.212 25 C -0.205 4.205 26 C 0.022 3.978 27 F -0.123 7.123 28 C -0.110 4.110 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.092 0.908 33 H 0.098 0.902 34 H 0.064 0.936 35 H 0.054 0.946 36 H 0.078 0.922 37 H 0.202 0.798 38 H 0.164 0.836 39 H 0.246 0.754 40 H 0.113 0.887 41 H 0.116 0.884 42 H 0.099 0.901 43 H 0.066 0.934 44 H 0.072 0.928 45 H 0.094 0.906 46 H 0.074 0.926 47 H 0.077 0.923 48 H 0.073 0.927 49 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 3.405 10.999 -6.547 13.245 hybrid contribution 0.314 0.544 0.360 0.724 sum 3.719 11.543 -6.187 13.614 Atomic orbital electron populations 1.22100 0.96765 1.01280 1.01999 1.21272 0.93546 0.83356 1.02692 1.48169 1.61883 1.13648 1.07908 1.19618 0.97349 0.92800 0.79188 1.21396 1.03140 1.28014 1.05950 0.91618 1.24938 0.97361 0.94496 0.96459 1.69914 1.36200 1.28373 1.17079 0.86657 0.83868 0.78884 0.78888 1.19560 1.21017 1.19934 1.18131 0.77720 0.85647 0.83791 1.90693 1.56402 1.66443 1.31435 1.19741 0.99883 0.94317 0.97737 1.22783 0.92238 0.97473 0.94925 1.21077 1.01318 0.92741 0.97424 1.17884 0.96222 0.86420 0.96123 1.43373 1.12934 1.07478 1.67776 1.20930 0.80736 0.92377 0.76081 1.90730 1.56141 1.44119 1.47101 1.21793 0.98247 0.93257 1.04183 1.20892 0.92091 0.96856 1.00316 1.21976 0.99593 1.02349 0.97298 1.21856 1.01317 0.95792 1.01491 1.17060 1.01002 0.87675 0.92015 1.91428 1.88539 1.65607 1.66774 1.20841 1.00627 0.90447 0.99046 0.92354 0.92444 0.92894 0.90823 0.90235 0.93639 0.94552 0.92244 0.79771 0.83633 0.75385 0.88685 0.88427 0.90067 0.93413 0.92837 0.90585 0.92609 0.92314 0.92700 0.84363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.58 10.24 37.16 0.38 -2.20 16 2 C 0.11 2.09 6.18 -4.04 -0.02 2.07 16 3 N -0.59 -12.29 2.46 -176.27 -0.43 -12.72 16 4 C 0.23 5.27 4.67 -5.20 -0.02 5.24 16 5 C -0.55 -13.28 6.36 -34.44 -0.22 -13.50 16 6 H 0.07 1.62 7.81 -52.49 -0.41 1.21 16 7 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 8 N -0.88 -22.92 13.29 55.43 0.74 -22.18 16 9 Si 0.89 19.69 29.54 -169.99 -5.02 14.67 16 10 H -0.27 -6.00 7.11 56.52 0.40 -5.59 16 11 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 12 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 13 C 0.56 12.03 7.26 -12.44 -0.09 11.94 16 14 O -0.57 -13.11 16.50 5.29 0.09 -13.02 16 15 C -0.11 -2.27 4.92 -104.96 -0.52 -2.79 16 16 C -0.06 -1.14 7.60 -39.22 -0.30 -1.44 16 17 C -0.11 -1.99 8.63 -39.47 -0.34 -2.33 16 18 C 0.13 2.13 6.32 -83.64 -0.53 1.60 16 19 N -0.67 -8.63 5.24 -9.80 -0.05 -8.68 16 20 C 0.51 6.61 7.29 -10.99 -0.08 6.53 16 21 O -0.51 -8.46 11.52 5.55 0.06 -8.40 16 22 C -0.13 -1.17 5.18 -27.88 -0.14 -1.31 16 23 C -0.08 -0.78 2.57 -90.62 -0.23 -1.01 16 24 C -0.15 -1.60 8.93 37.16 0.33 -1.27 16 25 C -0.15 -1.06 9.19 37.16 0.34 -0.72 16 26 C 0.04 0.73 7.30 -39.32 -0.29 0.44 16 27 F -0.14 -2.17 16.89 2.25 0.04 -2.13 16 28 C -0.09 -1.60 9.64 -39.15 -0.38 -1.98 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.07 1.35 7.32 -51.93 -0.38 0.97 16 33 H 0.08 1.42 8.11 -51.93 -0.42 1.00 16 34 H 0.05 1.09 5.76 -51.92 -0.30 0.79 16 35 H 0.04 0.88 8.12 -51.93 -0.42 0.45 16 36 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 37 H 0.19 4.15 4.32 -52.49 -0.23 3.93 16 38 H 0.15 2.84 6.26 -52.49 -0.33 2.51 16 39 H 0.41 3.95 8.57 -40.82 -0.35 3.60 16 40 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.08 0.91 7.96 -51.93 -0.41 0.50 16 43 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 44 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.08 0.99 5.95 -51.93 -0.31 0.68 16 46 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 47 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 48 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 49 H 0.14 2.32 8.06 -52.49 -0.42 1.90 16 LS Contribution 402.44 15.07 6.06 6.06 Total: -1.00 -28.89 402.44 -8.07 -36.96 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: -7.34 Total: 8.47 kcal Atomic # 6 Polarization: 3.18 SS G_CDS: -2.21 Total: 0.98 kcal Atomic # 7 Polarization: -43.84 SS G_CDS: 0.25 Total: -43.59 kcal Atomic # 8 Polarization: -21.58 SS G_CDS: 0.15 Total: -21.43 kcal Atomic # 9 Polarization: -2.17 SS G_CDS: 0.04 Total: -2.13 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -5.02 Total: 14.67 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -28.89 -8.07 -36.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084408801.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.822 kcal (2) G-P(sol) polarization free energy of solvation -28.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds