Wall clock time and date at job start Tue Mar 31 2020 05:19:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46497 * 109.47067 * 2 1 4 4 C 1.46504 * 120.00153 * 270.00677 * 3 2 1 5 5 C 1.50704 * 109.46997 * 269.99728 * 4 3 2 6 6 H 1.08001 * 119.99577 * 359.97438 * 5 4 3 7 7 C 1.37874 * 120.00260 * 179.97438 * 5 4 3 8 8 N 1.31519 * 119.99741 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00287 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.47038 * 90.00148 * 9 7 5 11 11 H 1.48504 * 109.47403 * 210.00393 * 9 7 5 12 12 H 1.48507 * 109.47108 * 330.00474 * 9 7 5 13 13 C 1.34780 * 119.99968 * 90.00070 * 3 2 1 14 14 O 1.21284 * 119.99769 * 180.02562 * 13 3 2 15 15 C 1.50694 * 119.99880 * 0.27753 * 13 3 2 16 16 H 1.09004 * 110.85508 * 55.93308 * 15 13 3 17 17 C 1.54622 * 110.97153 * 292.10505 * 15 13 3 18 18 C 1.51289 * 104.19381 * 217.08436 * 17 15 13 19 19 O 1.21284 * 124.93773 * 196.24871 * 18 17 15 20 20 N 1.34415 * 110.11647 * 16.25217 * 18 17 15 21 21 C 1.39919 * 124.34934 * 180.43295 * 20 18 17 22 22 C 1.38901 * 120.06432 * 353.96549 * 21 20 18 23 23 C 1.38099 * 119.95511 * 179.81721 * 22 21 20 24 24 C 1.38282 * 120.08678 * 0.44028 * 23 22 21 25 25 C 1.38380 * 120.12406 * 359.79112 * 24 23 22 26 26 Cl 1.73601 * 119.97773 * 179.97438 * 25 24 23 27 27 C 1.38250 * 120.04335 * 359.97438 * 25 24 23 28 28 C 1.46768 * 111.30060 * 0.40657 * 20 18 17 29 29 H 1.09003 * 109.46888 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46930 * 299.99262 * 1 2 3 31 31 H 1.08997 * 109.47566 * 60.00133 * 1 2 3 32 32 H 1.09003 * 109.46677 * 240.00288 * 2 1 3 33 33 H 1.09001 * 109.47317 * 120.00325 * 2 1 3 34 34 H 1.08999 * 109.47148 * 29.99204 * 4 3 2 35 35 H 1.08997 * 109.47073 * 149.99612 * 4 3 2 36 36 H 0.96996 * 119.99647 * 180.02562 * 8 7 5 37 37 H 1.09001 * 110.48695 * 335.75955 * 17 15 13 38 38 H 1.08994 * 110.49383 * 98.40657 * 17 15 13 39 39 H 1.07998 * 120.02265 * 0.02562 * 22 21 20 40 40 H 1.08000 * 119.95893 * 180.19075 * 23 22 21 41 41 H 1.08001 * 119.93708 * 179.76890 * 24 23 22 42 42 H 1.08004 * 120.04283 * 179.97438 * 27 25 24 43 43 H 1.08999 * 110.24342 * 223.98748 * 28 20 18 44 44 H 1.08997 * 110.24699 * 101.98694 * 28 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 3.6857 1.8352 -1.7039 6 1 4.3428 1.2310 -1.0959 7 6 4.1489 2.3898 -2.8781 8 7 3.3488 3.1259 -3.6181 9 14 5.9133 2.0970 -3.4171 10 1 5.9773 0.8757 -4.2594 11 1 6.3918 3.2643 -4.2005 12 1 6.7735 1.9181 -2.2198 13 6 2.2430 2.0165 1.1672 14 8 2.6468 3.1602 1.1672 15 6 1.9978 1.3040 2.4723 16 1 2.5680 0.3763 2.5209 17 6 0.4891 1.0389 2.6831 18 6 0.2813 1.2390 4.1682 19 8 -0.6882 0.8607 4.7911 20 7 1.3273 1.8972 4.6968 21 6 1.4474 2.2317 6.0501 22 6 0.3924 1.9944 6.9219 23 6 0.5147 2.3220 8.2579 24 6 1.6828 2.8942 8.7271 25 6 2.7343 3.1365 7.8608 26 17 4.1988 3.8557 8.4539 27 6 2.6193 2.8062 6.5233 28 6 2.3276 2.2193 3.6722 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 1.5816 1.6877 -2.0284 35 1 2.0953 3.1411 -1.1383 36 1 3.6746 3.5158 -4.4444 37 1 -0.1068 1.7532 2.1149 38 1 0.2375 0.0178 2.3969 39 1 -0.5218 1.5510 6.5558 40 1 -0.3044 2.1347 8.9363 41 1 1.7745 3.1529 9.7717 42 1 3.4398 2.9957 5.8470 43 1 3.3300 2.0073 4.0440 44 1 2.2459 3.2666 3.3815 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084774708.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:48 Heat of formation + Delta-G solvation = -34.057519 kcal Electronic energy + Delta-G solvation = -28415.770761 eV Core-core repulsion = 24359.459972 eV Total energy + Delta-G solvation = -4056.310790 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 350.118 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.55513 -39.53808 -38.73589 -36.82532 -36.50291 -35.55898 -33.62782 -32.65665 -31.08576 -30.35100 -29.48095 -28.07309 -27.23925 -24.43369 -23.51546 -23.08212 -22.67218 -21.55291 -20.14706 -18.51111 -17.98484 -17.51012 -16.76436 -16.50552 -16.16419 -15.75598 -15.58648 -15.15264 -14.86326 -14.55678 -14.38264 -14.05861 -13.98728 -13.91560 -13.77653 -13.33416 -13.10703 -12.82643 -12.46787 -12.28896 -12.08791 -11.93515 -11.86766 -11.77467 -11.63899 -11.44279 -11.26726 -11.18732 -10.92056 -10.77055 -10.60037 -10.39108 -10.20929 -9.93851 -9.73220 -9.14132 -9.11082 -8.51065 -8.24101 -7.83897 -6.12240 -4.17458 0.85308 0.91085 1.79970 2.27689 2.49236 3.08653 3.25058 3.32526 3.35838 3.42414 3.58961 3.97639 4.17954 4.38186 4.53577 4.63549 4.63999 4.75323 4.89046 5.02157 5.06387 5.17016 5.22046 5.25101 5.26477 5.30276 5.37384 5.51146 5.55533 5.63887 5.77518 5.79658 5.90677 5.93789 6.08614 6.13490 6.15239 6.40295 6.64846 6.72836 6.92377 7.31963 7.39444 7.72909 7.83209 8.13271 8.22631 8.74453 8.90712 9.48046 10.95918 Molecular weight = 350.12amu Principal moments of inertia in cm(-1) A = 0.013219 B = 0.002630 C = 0.002258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2117.613363 B =10642.972880 C =12396.430900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.104 3.896 3 N -0.589 5.589 4 C 0.246 3.754 5 C -0.529 4.529 6 H 0.058 0.942 7 C 0.062 3.938 8 N -0.894 5.894 9 Si 0.898 3.102 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.516 3.484 14 O -0.533 6.533 15 C -0.123 4.123 16 H 0.117 0.883 17 C -0.145 4.145 18 C 0.523 3.477 19 O -0.510 6.510 20 N -0.558 5.558 21 C 0.186 3.814 22 C -0.155 4.155 23 C -0.079 4.079 24 C -0.141 4.141 25 C -0.006 4.006 26 Cl -0.068 7.068 27 C -0.151 4.151 28 C 0.107 3.893 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.085 0.915 33 H 0.065 0.935 34 H 0.034 0.966 35 H 0.045 0.955 36 H 0.264 0.736 37 H 0.119 0.881 38 H 0.123 0.877 39 H 0.161 0.839 40 H 0.136 0.864 41 H 0.133 0.867 42 H 0.139 0.861 43 H 0.093 0.907 44 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.462 -5.340 20.590 21.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.020 4.020 3 N -0.319 5.319 4 C 0.127 3.873 5 C -0.567 4.567 6 H 0.076 0.924 7 C -0.140 4.140 8 N -0.532 5.532 9 Si 0.726 3.274 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.301 3.699 14 O -0.411 6.411 15 C -0.145 4.145 16 H 0.135 0.865 17 C -0.185 4.185 18 C 0.313 3.687 19 O -0.385 6.385 20 N -0.280 5.280 21 C 0.091 3.909 22 C -0.175 4.175 23 C -0.098 4.098 24 C -0.160 4.160 25 C -0.033 4.033 26 Cl -0.039 7.039 27 C -0.173 4.173 28 C -0.014 4.014 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.103 0.897 33 H 0.083 0.917 34 H 0.052 0.948 35 H 0.063 0.937 36 H 0.074 0.926 37 H 0.137 0.863 38 H 0.141 0.859 39 H 0.178 0.822 40 H 0.154 0.846 41 H 0.151 0.849 42 H 0.157 0.843 43 H 0.111 0.889 44 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -5.640 -4.765 20.713 21.989 hybrid contribution 1.307 -0.126 -0.481 1.398 sum -4.333 -4.891 20.231 21.260 Atomic orbital electron populations 1.22656 0.96668 1.02068 1.03390 1.21480 0.93687 0.83997 1.02883 1.48232 1.62880 1.13289 1.07530 1.19332 0.96463 0.93654 0.77851 1.21399 0.96816 1.32157 1.06376 0.92410 1.24931 0.97894 0.94831 0.96383 1.69926 1.35756 1.33256 1.14298 0.86497 0.84573 0.77721 0.78634 1.20633 1.21068 1.19862 1.19641 0.79086 0.86738 0.84434 1.90704 1.45869 1.17774 1.86740 1.22285 0.96774 1.00827 0.94601 0.86531 1.22785 0.96561 1.06367 0.92751 1.21146 0.81270 0.76014 0.90315 1.90614 1.30618 1.50507 1.66782 1.45925 1.22048 1.54010 1.06044 1.17608 0.94098 0.96720 0.82503 1.21765 0.99897 1.02704 0.93158 1.21005 0.97018 0.96696 0.95051 1.21019 0.92807 1.02300 0.99896 1.20575 0.88963 1.00376 0.93429 1.98381 1.35289 1.81912 1.88282 1.20662 0.97903 1.03970 0.94737 1.22279 0.91920 1.01920 0.85326 0.91918 0.91609 0.91854 0.89666 0.91676 0.94788 0.93746 0.92633 0.86273 0.85892 0.82196 0.84640 0.84937 0.84285 0.88921 0.87555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.16 9.44 37.16 0.35 -1.81 16 2 C 0.10 1.42 5.65 -4.04 -0.02 1.39 16 3 N -0.59 -10.90 2.46 -175.06 -0.43 -11.33 16 4 C 0.25 5.94 5.16 -5.19 -0.03 5.91 16 5 C -0.53 -14.14 9.39 -34.44 -0.32 -14.46 16 6 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 7 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 8 N -0.89 -25.63 13.29 55.43 0.74 -24.90 16 9 Si 0.90 21.08 29.54 -169.99 -5.02 16.06 16 10 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 12 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 13 C 0.52 9.14 6.95 -10.99 -0.08 9.06 16 14 O -0.53 -11.78 15.08 5.55 0.08 -11.70 16 15 C -0.12 -1.49 2.55 -90.15 -0.23 -1.72 16 16 H 0.12 1.18 7.24 -51.93 -0.38 0.80 16 17 C -0.14 -1.56 4.06 -26.74 -0.11 -1.67 16 18 C 0.52 6.53 7.92 -10.86 -0.09 6.44 16 19 O -0.51 -7.39 14.82 5.55 0.08 -7.30 16 20 N -0.56 -6.68 3.14 -112.27 -0.35 -7.04 16 21 C 0.19 2.21 6.60 -83.70 -0.55 1.65 16 22 C -0.16 -1.76 9.29 -39.39 -0.37 -2.13 16 23 C -0.08 -0.72 10.04 -39.62 -0.40 -1.12 16 24 C -0.14 -1.27 9.83 -39.51 -0.39 -1.66 16 25 C -0.01 -0.06 6.32 -39.52 -0.25 -0.31 16 26 Cl -0.07 -0.66 28.95 -51.86 -1.50 -2.16 16 27 C -0.15 -1.66 9.20 -39.36 -0.36 -2.02 16 28 C 0.11 1.27 5.87 -3.12 -0.02 1.25 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.68 3.82 -51.93 -0.20 0.49 16 31 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.08 1.25 8.07 -51.93 -0.42 0.83 16 33 H 0.06 0.70 6.10 -51.93 -0.32 0.39 16 34 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 35 H 0.04 1.22 7.42 -51.93 -0.39 0.84 16 36 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 37 H 0.12 1.34 6.94 -51.93 -0.36 0.98 16 38 H 0.12 1.09 6.17 -51.93 -0.32 0.77 16 39 H 0.16 1.99 5.26 -52.49 -0.28 1.72 16 40 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 41 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 42 H 0.14 1.42 6.74 -52.48 -0.35 1.07 16 43 H 0.09 0.95 7.23 -51.93 -0.38 0.58 16 44 H 0.11 1.44 6.96 -51.93 -0.36 1.08 16 LS Contribution 370.86 15.07 5.59 5.59 Total: -1.00 -32.03 370.86 -9.17 -41.20 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -5.40 Total: 1.16 kcal Atomic # 6 Polarization: 3.37 SS G_CDS: -2.95 Total: 0.42 kcal Atomic # 7 Polarization: -43.21 SS G_CDS: -0.05 Total: -43.26 kcal Atomic # 8 Polarization: -19.17 SS G_CDS: 0.17 Total: -19.00 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 17 Polarization: -0.66 SS G_CDS: -1.50 Total: -2.16 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.03 -9.17 -41.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084774708.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.140 kcal (2) G-P(sol) polarization free energy of solvation -32.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds