Wall clock time and date at job start Tue Mar 31 2020 05:19:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46497 * 109.47067 * 2 1 4 4 C 1.46504 * 120.00153 * 270.00677 * 3 2 1 5 5 C 1.50704 * 109.46997 * 269.99728 * 4 3 2 6 6 H 1.08001 * 119.99577 * 359.97438 * 5 4 3 7 7 C 1.37874 * 120.00260 * 179.97438 * 5 4 3 8 8 N 1.31519 * 119.99741 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00287 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.47038 * 90.00148 * 9 7 5 11 11 H 1.48504 * 109.47403 * 210.00393 * 9 7 5 12 12 H 1.48507 * 109.47108 * 330.00474 * 9 7 5 13 13 C 1.34780 * 119.99968 * 90.00070 * 3 2 1 14 14 O 1.21284 * 119.99769 * 180.02562 * 13 3 2 15 15 C 1.50694 * 119.99880 * 0.27753 * 13 3 2 16 16 H 1.09004 * 110.85508 * 55.93308 * 15 13 3 17 17 C 1.54622 * 110.97153 * 292.10505 * 15 13 3 18 18 C 1.51289 * 104.19381 * 217.08436 * 17 15 13 19 19 O 1.21284 * 124.93773 * 196.24871 * 18 17 15 20 20 N 1.34415 * 110.11647 * 16.25217 * 18 17 15 21 21 C 1.39919 * 124.34934 * 180.43295 * 20 18 17 22 22 C 1.38901 * 120.06432 * 353.96549 * 21 20 18 23 23 C 1.38099 * 119.95511 * 179.81721 * 22 21 20 24 24 C 1.38282 * 120.08678 * 0.44028 * 23 22 21 25 25 C 1.38380 * 120.12406 * 359.79112 * 24 23 22 26 26 Cl 1.73601 * 119.97773 * 179.97438 * 25 24 23 27 27 C 1.38250 * 120.04335 * 359.97438 * 25 24 23 28 28 C 1.46768 * 111.30060 * 0.40657 * 20 18 17 29 29 H 1.09003 * 109.46888 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46930 * 299.99262 * 1 2 3 31 31 H 1.08997 * 109.47566 * 60.00133 * 1 2 3 32 32 H 1.09003 * 109.46677 * 240.00288 * 2 1 3 33 33 H 1.09001 * 109.47317 * 120.00325 * 2 1 3 34 34 H 1.08999 * 109.47148 * 29.99204 * 4 3 2 35 35 H 1.08997 * 109.47073 * 149.99612 * 4 3 2 36 36 H 0.96996 * 119.99647 * 180.02562 * 8 7 5 37 37 H 1.09001 * 110.48695 * 335.75955 * 17 15 13 38 38 H 1.08994 * 110.49383 * 98.40657 * 17 15 13 39 39 H 1.07998 * 120.02265 * 0.02562 * 22 21 20 40 40 H 1.08000 * 119.95893 * 180.19075 * 23 22 21 41 41 H 1.08001 * 119.93708 * 179.76890 * 24 23 22 42 42 H 1.08004 * 120.04283 * 179.97438 * 27 25 24 43 43 H 1.08999 * 110.24342 * 223.98748 * 28 20 18 44 44 H 1.08997 * 110.24699 * 101.98694 * 28 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 3.6857 1.8352 -1.7039 6 1 4.3428 1.2310 -1.0959 7 6 4.1489 2.3898 -2.8781 8 7 3.3488 3.1259 -3.6181 9 14 5.9133 2.0970 -3.4171 10 1 5.9773 0.8757 -4.2594 11 1 6.3918 3.2643 -4.2005 12 1 6.7735 1.9181 -2.2198 13 6 2.2430 2.0165 1.1672 14 8 2.6468 3.1602 1.1672 15 6 1.9978 1.3040 2.4723 16 1 2.5680 0.3763 2.5209 17 6 0.4891 1.0389 2.6831 18 6 0.2813 1.2390 4.1682 19 8 -0.6882 0.8607 4.7911 20 7 1.3273 1.8972 4.6968 21 6 1.4474 2.2317 6.0501 22 6 0.3924 1.9944 6.9219 23 6 0.5147 2.3220 8.2579 24 6 1.6828 2.8942 8.7271 25 6 2.7343 3.1365 7.8608 26 17 4.1988 3.8557 8.4539 27 6 2.6193 2.8062 6.5233 28 6 2.3276 2.2193 3.6722 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 1.5816 1.6877 -2.0284 35 1 2.0953 3.1411 -1.1383 36 1 3.6746 3.5158 -4.4444 37 1 -0.1068 1.7532 2.1149 38 1 0.2375 0.0178 2.3969 39 1 -0.5218 1.5510 6.5558 40 1 -0.3044 2.1347 8.9363 41 1 1.7745 3.1529 9.7717 42 1 3.4398 2.9957 5.8470 43 1 3.3300 2.0073 4.0440 44 1 2.2459 3.2666 3.3815 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084774708.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:47 Heat of formation + Delta-G solvation = -52.125908 kcal Electronic energy + Delta-G solvation = -28416.554266 eV Core-core repulsion = 24359.459972 eV Total energy + Delta-G solvation = -4057.094294 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 350.118 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.53861 -40.75518 -39.69980 -37.76357 -37.40043 -37.01802 -35.09103 -34.15949 -31.87685 -31.65565 -30.43592 -29.28653 -28.72442 -25.84871 -24.57331 -24.21291 -23.81634 -22.65590 -21.04648 -19.78172 -18.95324 -18.78186 -18.39872 -17.63133 -17.36819 -16.90538 -16.65338 -16.37397 -16.18285 -15.82400 -15.53641 -15.07040 -15.02255 -14.79491 -14.75361 -14.46878 -14.26914 -14.10568 -13.84846 -13.56037 -13.21740 -13.13900 -13.07150 -12.81250 -12.70010 -12.65101 -12.54747 -12.53282 -12.31136 -12.04852 -11.94692 -11.74795 -11.67529 -11.25219 -10.94143 -10.61938 -10.58143 -9.90308 -9.44795 -9.10325 -8.20649 -6.34693 0.03465 0.12156 1.01480 1.35451 1.38795 1.41329 1.50880 1.56890 1.73483 2.23047 2.42611 2.62236 2.97507 3.10122 3.18913 3.58218 3.65567 3.79034 3.96380 4.01885 4.09418 4.22594 4.26819 4.33512 4.37514 4.44159 4.49437 4.61590 4.65045 4.67154 4.80631 4.96235 4.99509 5.03641 5.10474 5.15110 5.25929 5.30965 5.36546 5.46858 5.59834 5.81623 5.83799 5.85623 6.08055 6.70710 6.78081 6.79643 7.28635 7.43991 8.86409 Molecular weight = 350.12amu Principal moments of inertia in cm(-1) A = 0.013219 B = 0.002630 C = 0.002258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2117.613363 B =10642.972880 C =12396.430900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.096 3.904 3 N -0.594 5.594 4 C 0.261 3.739 5 C -0.539 4.539 6 H 0.057 0.943 7 C 0.007 3.993 8 N -0.930 5.930 9 Si 0.965 3.035 10 H -0.266 1.266 11 H -0.285 1.285 12 H -0.270 1.270 13 C 0.512 3.488 14 O -0.587 6.587 15 C -0.106 4.106 16 H 0.151 0.849 17 C -0.136 4.136 18 C 0.522 3.478 19 O -0.531 6.531 20 N -0.556 5.556 21 C 0.165 3.835 22 C -0.167 4.167 23 C -0.072 4.072 24 C -0.135 4.135 25 C -0.015 4.015 26 Cl -0.065 7.065 27 C -0.158 4.158 28 C 0.111 3.889 29 H 0.095 0.905 30 H 0.077 0.923 31 H 0.038 0.962 32 H 0.073 0.927 33 H 0.106 0.894 34 H 0.023 0.977 35 H -0.001 1.001 36 H 0.266 0.734 37 H 0.114 0.886 38 H 0.153 0.847 39 H 0.149 0.851 40 H 0.164 0.836 41 H 0.157 0.843 42 H 0.141 0.859 43 H 0.111 0.889 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.052 -7.399 22.598 24.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.026 4.026 3 N -0.324 5.324 4 C 0.140 3.860 5 C -0.578 4.578 6 H 0.076 0.924 7 C -0.191 4.191 8 N -0.569 5.569 9 Si 0.789 3.211 10 H -0.191 1.191 11 H -0.211 1.211 12 H -0.195 1.195 13 C 0.299 3.701 14 O -0.468 6.468 15 C -0.128 4.128 16 H 0.169 0.831 17 C -0.176 4.176 18 C 0.312 3.688 19 O -0.409 6.409 20 N -0.278 5.278 21 C 0.071 3.929 22 C -0.188 4.188 23 C -0.091 4.091 24 C -0.154 4.154 25 C -0.042 4.042 26 Cl -0.036 7.036 27 C -0.179 4.179 28 C -0.011 4.011 29 H 0.114 0.886 30 H 0.095 0.905 31 H 0.057 0.943 32 H 0.091 0.909 33 H 0.124 0.876 34 H 0.041 0.959 35 H 0.017 0.983 36 H 0.075 0.925 37 H 0.132 0.868 38 H 0.170 0.830 39 H 0.166 0.834 40 H 0.182 0.818 41 H 0.174 0.826 42 H 0.159 0.841 43 H 0.129 0.871 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -5.241 -6.866 22.747 24.332 hybrid contribution 1.144 0.568 -1.025 1.638 sum -4.096 -6.299 21.723 22.985 Atomic orbital electron populations 1.22614 0.94739 1.04008 1.02767 1.21822 0.95264 0.81182 1.04298 1.48203 1.63105 1.15093 1.05976 1.18734 0.95275 0.91646 0.80345 1.21725 0.97894 1.31787 1.06390 0.92442 1.25827 1.02134 0.94579 0.96602 1.70051 1.37754 1.34346 1.14797 0.85456 0.79354 0.77972 0.78286 1.19066 1.21070 1.19473 1.20496 0.77556 0.86238 0.85789 1.90680 1.48067 1.20322 1.87696 1.22164 0.98409 1.01247 0.90938 0.83118 1.22815 0.95164 1.07935 0.91645 1.21324 0.80985 0.75745 0.90712 1.90611 1.31367 1.51607 1.67292 1.45916 1.21869 1.53798 1.06209 1.17794 0.94774 0.97845 0.82508 1.21802 0.99391 1.03375 0.94205 1.21316 0.97814 0.95454 0.94503 1.21329 0.92108 1.01080 1.00881 1.20745 0.89512 1.00485 0.93462 1.98382 1.35196 1.81852 1.88146 1.20727 0.97790 1.04108 0.95279 1.22190 0.92893 1.00652 0.85400 0.88610 0.90492 0.94290 0.90863 0.87623 0.95927 0.98289 0.92531 0.86823 0.82962 0.83363 0.81829 0.82563 0.84104 0.87133 0.89809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.78 9.44 71.98 0.68 -3.10 16 2 C 0.10 2.45 5.65 86.38 0.49 2.94 16 3 N -0.59 -22.10 2.46 -826.14 -2.03 -24.12 16 4 C 0.26 13.19 5.16 85.63 0.44 13.63 16 5 C -0.54 -29.46 9.39 25.60 0.24 -29.22 16 6 H 0.06 3.07 7.81 -2.91 -0.02 3.04 16 7 C 0.01 0.42 5.46 84.65 0.46 0.88 16 8 N -0.93 -54.88 13.29 21.45 0.28 -54.59 16 9 Si 0.96 43.47 29.54 68.60 2.03 45.49 16 10 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 11 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 12 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 13 C 0.51 18.17 6.95 87.65 0.61 18.78 16 14 O -0.59 -27.03 15.08 -3.04 -0.05 -27.07 16 15 C -0.11 -2.38 2.55 -10.49 -0.03 -2.41 16 16 H 0.15 2.43 7.24 -2.38 -0.02 2.42 16 17 C -0.14 -2.65 4.06 30.59 0.12 -2.52 16 18 C 0.52 12.28 7.92 87.90 0.70 12.97 16 19 O -0.53 -14.78 14.82 -3.04 -0.05 -14.82 16 20 N -0.56 -12.77 3.14 -627.70 -1.97 -14.74 16 21 C 0.17 3.78 6.60 38.15 0.25 4.03 16 22 C -0.17 -3.61 9.29 22.40 0.21 -3.41 16 23 C -0.07 -1.16 10.04 22.25 0.22 -0.93 16 24 C -0.13 -2.11 9.83 22.31 0.22 -1.89 16 25 C -0.01 -0.28 6.32 22.31 0.14 -0.14 16 26 Cl -0.06 -1.17 28.95 -2.72 -0.08 -1.25 16 27 C -0.16 -3.31 9.20 22.41 0.21 -3.11 16 28 C 0.11 2.53 5.87 86.83 0.51 3.04 16 29 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.08 1.41 3.82 -2.39 -0.01 1.40 16 31 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.07 2.06 8.07 -2.39 -0.02 2.04 16 33 H 0.11 1.85 6.10 -2.39 -0.01 1.83 16 34 H 0.02 1.18 8.07 -2.39 -0.02 1.16 16 35 H 0.00 -0.06 7.42 -2.39 -0.02 -0.08 16 36 H 0.27 14.79 8.31 -92.71 -0.77 14.02 16 37 H 0.11 2.42 6.94 -2.39 -0.02 2.41 16 38 H 0.15 2.08 6.17 -2.39 -0.01 2.06 16 39 H 0.15 3.59 5.26 -2.91 -0.02 3.58 16 40 H 0.16 1.62 8.06 -2.91 -0.02 1.60 16 41 H 0.16 1.68 8.06 -2.91 -0.02 1.66 16 42 H 0.14 2.79 6.74 -2.91 -0.02 2.77 16 43 H 0.11 2.12 7.23 -2.39 -0.02 2.11 16 44 H 0.08 2.35 6.96 -2.39 -0.02 2.33 16 Total: -1.00 -73.34 370.86 4.66 -68.68 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: 1.04 Total: 12.87 kcal Atomic # 6 Polarization: 4.08 SS G_CDS: 5.47 Total: 9.55 kcal Atomic # 7 Polarization: -89.74 SS G_CDS: -3.71 Total: -93.45 kcal Atomic # 8 Polarization: -41.81 SS G_CDS: -0.09 Total: -41.90 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.49 kcal Atomic # 17 Polarization: -1.17 SS G_CDS: -0.08 Total: -1.25 kcal Total: -73.34 4.66 -68.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084774708.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.557 kcal (2) G-P(sol) polarization free energy of solvation -73.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds