Wall clock time and date at job start Tue Mar 31 2020 05:50:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.41765 * 120.64583 * 2 1 4 4 C 1.40319 * 120.18272 * 359.94897 * 3 2 1 5 5 C 1.36567 * 119.87209 * 180.02562 * 4 3 2 6 6 Br 1.89095 * 119.77971 * 180.02562 * 5 4 3 7 7 C 1.38907 * 120.44287 * 0.02562 * 5 4 3 8 8 C 1.37855 * 120.62847 * 359.95744 * 7 5 4 9 9 C 1.39068 * 120.01093 * 0.04350 * 8 7 5 10 10 O 1.35035 * 119.86274 * 179.97438 * 9 8 7 11 11 C 1.34331 * 121.44830 * 180.02562 * 10 9 8 12 12 O 1.21673 * 119.92453 * 179.97438 * 11 10 9 13 13 C 1.38501 * 120.64707 * 179.71627 * 2 1 3 14 14 C 1.47138 * 120.60704 * 359.97438 * 13 2 1 15 15 O 1.21666 * 119.99515 * 90.00426 * 14 13 2 16 16 N 1.34775 * 120.00121 * 270.00048 * 14 13 2 17 17 C 1.36832 * 120.00046 * 179.97438 * 16 14 13 18 18 H 1.08004 * 119.99803 * 0.02562 * 17 16 14 19 19 C 1.39061 * 120.00283 * 180.02562 * 17 16 14 20 20 N 1.31352 * 120.00079 * 179.97438 * 19 17 16 21 21 Si 1.86803 * 119.99790 * 359.97438 * 19 17 16 22 22 H 1.48501 * 109.47143 * 90.00245 * 21 19 17 23 23 H 1.48503 * 109.47019 * 209.99860 * 21 19 17 24 24 H 1.48495 * 109.47096 * 329.99805 * 21 19 17 25 25 H 1.09001 * 109.46953 * 90.00155 * 1 2 3 26 26 H 1.09000 * 109.47318 * 209.99753 * 1 2 3 27 27 H 1.09000 * 109.47161 * 330.00383 * 1 2 3 28 28 H 1.08003 * 120.06594 * 0.02562 * 4 3 2 29 29 H 1.08003 * 119.68480 * 179.97438 * 7 5 4 30 30 H 1.08001 * 119.99560 * 179.97438 * 8 7 5 31 31 H 0.97003 * 120.00177 * 0.02562 * 16 14 13 32 32 H 0.97004 * 120.00238 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2297 1.2197 0.0000 4 6 1.5457 2.4449 -0.0011 5 6 2.2482 3.6160 -0.0016 6 35 1.3239 5.2656 -0.0023 7 6 3.6372 3.6036 -0.0016 8 6 4.3289 2.4111 -0.0002 9 6 3.6362 1.2052 0.0003 10 8 4.3167 0.0389 0.0012 11 6 3.6801 -1.1440 0.0012 12 8 4.3211 -2.1783 0.0015 13 6 2.2131 -1.1915 0.0059 14 6 1.5054 -2.4816 0.0129 15 8 1.2126 -3.0203 -1.0380 16 7 1.1818 -3.0664 1.1832 17 6 0.5233 -4.2658 1.1896 18 1 0.2632 -4.7440 0.2568 19 6 0.1888 -4.8689 2.3972 20 7 -0.4438 -6.0201 2.4033 21 14 0.6392 -4.0421 4.0105 22 1 -0.4685 -3.1487 4.4350 23 1 0.8666 -5.0772 5.0507 24 1 1.8776 -3.2430 3.8284 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5138 28 1 0.4658 2.4617 -0.0015 29 1 4.1805 4.5370 -0.0024 30 1 5.4089 2.4133 -0.0006 31 1 1.4150 -2.6366 2.0210 32 1 -0.6768 -6.4410 3.2456 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087233645.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:09 Heat of formation + Delta-G solvation = -56.015554 kcal Electronic energy + Delta-G solvation = -22151.349029 eV Core-core repulsion = 18510.273530 eV Total energy + Delta-G solvation = -3641.075499 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 350.994 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.01596 -39.26974 -38.59156 -37.19670 -35.58075 -34.10152 -32.44799 -31.82174 -30.80067 -29.33845 -28.86848 -25.81758 -24.13519 -23.72225 -22.11207 -20.50920 -19.59132 -18.99171 -17.62498 -17.36968 -16.84316 -15.97976 -15.51316 -15.32648 -15.09572 -14.72302 -14.50400 -14.03260 -13.78313 -13.50074 -13.27845 -13.02508 -12.88005 -12.61028 -12.44349 -12.32129 -11.90833 -11.83976 -11.27776 -11.11021 -10.75038 -10.67338 -10.36924 -10.31414 -10.07363 -9.70076 -9.13235 -8.88165 -8.39003 -8.31617 -6.43230 -3.93545 -0.13468 0.48033 1.11759 1.32627 2.15430 2.49718 2.96383 3.01826 3.09792 3.28404 3.34255 3.83412 4.00221 4.02585 4.15451 4.42203 4.46045 4.61534 4.91989 4.98431 5.13292 5.22154 5.27866 5.39490 5.52490 5.57272 5.61129 5.76475 5.95194 5.98545 6.18616 7.00916 7.40918 7.43585 7.99253 8.43861 8.80045 9.27699 9.63552 10.68697 Molecular weight = 350.99amu Principal moments of inertia in cm(-1) A = 0.016752 B = 0.003172 C = 0.002934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1671.045016 B = 8826.040961 C = 9541.956426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.029 3.971 3 C -0.129 4.129 4 C -0.028 4.028 5 C -0.117 4.117 6 Br -0.040 7.040 7 C -0.044 4.044 8 C -0.126 4.126 9 C 0.162 3.838 10 O -0.267 6.267 11 C 0.517 3.483 12 O -0.429 6.429 13 C -0.209 4.209 14 C 0.503 3.497 15 O -0.560 6.560 16 N -0.563 5.563 17 C -0.308 4.308 18 H 0.124 0.876 19 C 0.049 3.951 20 N -0.869 5.869 21 Si 0.874 3.126 22 H -0.267 1.267 23 H -0.272 1.272 24 H -0.268 1.268 25 H 0.095 0.905 26 H 0.093 0.907 27 H 0.079 0.921 28 H 0.152 0.848 29 H 0.148 0.852 30 H 0.153 0.847 31 H 0.372 0.628 32 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.305 27.767 -1.121 28.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.027 3.973 3 C -0.131 4.131 4 C -0.048 4.048 5 C -0.196 4.196 6 Br 0.045 6.955 7 C -0.063 4.063 8 C -0.145 4.145 9 C 0.117 3.883 10 O -0.179 6.179 11 C 0.362 3.638 12 O -0.313 6.313 13 C -0.214 4.214 14 C 0.288 3.712 15 O -0.443 6.443 16 N -0.200 5.200 17 C -0.437 4.437 18 H 0.142 0.858 19 C -0.156 4.156 20 N -0.507 5.507 21 Si 0.699 3.301 22 H -0.192 1.192 23 H -0.197 1.197 24 H -0.193 1.193 25 H 0.113 0.887 26 H 0.112 0.888 27 H 0.098 0.902 28 H 0.169 0.831 29 H 0.166 0.834 30 H 0.171 0.829 31 H 0.205 0.795 32 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.169 27.264 -1.688 27.633 hybrid contribution 0.532 0.081 1.341 1.445 sum 4.701 27.346 -0.347 27.749 Atomic orbital electron populations 1.21086 0.88440 1.04667 1.04525 1.20779 0.97469 0.89538 0.89550 1.17971 0.91765 0.94333 1.09035 1.21083 1.00943 0.88980 0.93763 1.21421 0.94993 0.92307 1.10925 1.96771 1.75976 1.24926 1.97834 1.21105 0.91875 0.98383 0.94964 1.20606 1.01411 0.88193 1.04284 1.19269 0.89491 0.84459 0.95124 1.83671 1.42598 1.13831 1.77753 1.20480 0.87317 0.80717 0.75332 1.91014 1.69112 1.26625 1.44527 1.22733 0.92152 0.96804 1.09704 1.16540 0.85280 0.84314 0.85066 1.90712 1.58231 1.64253 1.31109 1.42110 1.51405 1.20688 1.05785 1.19460 1.32128 0.95170 0.96918 0.85797 1.25052 0.96663 0.95870 0.98000 1.69584 1.37883 1.15510 1.27744 0.86746 0.79190 0.80155 0.83988 1.19232 1.19694 1.19304 0.88655 0.88848 0.90220 0.83054 0.83393 0.82895 0.79472 0.91268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.65 9.17 36.01 0.33 -1.32 16 2 C 0.03 0.42 6.00 -103.18 -0.62 -0.20 16 3 C -0.13 -1.55 5.74 -106.85 -0.61 -2.17 16 4 C -0.03 -0.26 8.99 -39.40 -0.35 -0.61 16 5 C -0.12 -0.96 6.18 -39.94 -0.25 -1.21 16 6 Br -0.04 -0.30 33.67 -68.01 -2.29 -2.59 16 7 C -0.04 -0.31 9.75 -39.47 -0.39 -0.70 16 8 C -0.13 -1.09 9.98 -39.41 -0.39 -1.48 16 9 C 0.16 1.99 6.75 -38.36 -0.26 1.73 16 10 O -0.27 -4.12 9.80 -21.07 -0.21 -4.33 16 11 C 0.52 9.94 8.13 34.18 0.28 10.22 16 12 O -0.43 -9.80 17.50 -19.44 -0.34 -10.14 16 13 C -0.21 -4.00 5.80 -102.74 -0.60 -4.59 16 14 C 0.50 12.07 5.40 -12.65 -0.07 12.00 16 15 O -0.56 -15.66 16.68 5.22 0.09 -15.57 16 16 N -0.56 -13.81 5.08 -12.04 -0.06 -13.87 16 17 C -0.31 -8.67 10.16 -15.02 -0.15 -8.82 16 18 H 0.12 3.95 7.38 -52.48 -0.39 3.56 16 19 C 0.05 1.33 5.50 -17.45 -0.10 1.23 16 20 N -0.87 -24.83 13.95 55.50 0.77 -24.05 16 21 Si 0.87 19.20 27.74 -169.99 -4.71 14.49 16 22 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 23 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 24 H -0.27 -5.59 6.52 56.52 0.37 -5.22 16 25 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 26 H 0.09 1.41 7.13 -51.93 -0.37 1.04 16 27 H 0.08 0.70 6.42 -51.93 -0.33 0.37 16 28 H 0.15 1.13 6.30 -52.48 -0.33 0.80 16 29 H 0.15 0.67 8.06 -52.48 -0.42 0.25 16 30 H 0.15 0.98 8.06 -52.49 -0.42 0.56 16 31 H 0.37 8.20 5.74 -40.82 -0.23 7.96 16 32 H 0.28 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 308.25 15.07 4.65 4.65 Total: -1.00 -33.76 308.25 -7.37 -41.14 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: -2.09 Total: 6.19 kcal Atomic # 6 Polarization: 7.26 SS G_CDS: -3.18 Total: 4.08 kcal Atomic # 7 Polarization: -38.64 SS G_CDS: 0.71 Total: -37.92 kcal Atomic # 8 Polarization: -29.58 SS G_CDS: -0.46 Total: -30.04 kcal Atomic # 14 Polarization: 19.20 SS G_CDS: -4.71 Total: 14.49 kcal Atomic # 35 Polarization: -0.30 SS G_CDS: -2.29 Total: -2.59 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -33.76 -7.37 -41.14 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087233645.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.878 kcal (2) G-P(sol) polarization free energy of solvation -33.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds