Wall clock time and date at job start Tue Mar 31 2020 05:10:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34230 * 117.00209 * 2 1 4 4 O 1.20824 * 119.99930 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00193 * 180.02562 * 3 2 1 6 6 N 1.46494 * 109.47209 * 179.97438 * 5 3 2 7 7 C 1.36940 * 120.00053 * 269.15344 * 6 5 3 8 8 H 1.08004 * 120.00314 * 189.77606 * 7 6 5 9 9 C 1.38813 * 120.00081 * 9.78506 * 7 6 5 10 10 N 1.31617 * 120.00156 * 24.80748 * 9 7 6 11 11 Si 1.86803 * 120.00068 * 204.81679 * 9 7 6 12 12 H 1.48498 * 109.47447 * 85.15007 * 11 9 7 13 13 H 1.48502 * 109.46835 * 205.15728 * 11 9 7 14 14 H 1.48510 * 109.46763 * 325.15292 * 11 9 7 15 15 C 1.46499 * 120.00180 * 89.15482 * 6 5 3 16 16 C 1.50694 * 109.47291 * 270.00120 * 15 6 5 17 17 C 1.35379 * 126.73358 * 94.97754 * 16 15 6 18 18 N 1.36111 * 106.05109 * 180.02562 * 17 16 15 19 19 C 1.40275 * 125.93974 * 180.02562 * 18 17 16 20 20 C 1.38825 * 120.05001 * 359.72639 * 19 18 17 21 21 C 1.38111 * 119.94254 * 179.72446 * 20 19 18 22 22 C 1.38384 * 120.05382 * 0.54697 * 21 20 19 23 23 Cl 1.73600 * 119.95067 * 179.74625 * 22 21 20 24 24 C 1.38390 * 120.10391 * 359.72570 * 22 21 20 25 25 C 1.38110 * 120.05304 * 0.02562 * 24 22 21 26 26 N 1.28730 * 108.11729 * 0.02562 * 18 17 16 27 27 N 1.28605 * 110.23444 * 359.97438 * 26 18 17 28 28 H 1.09005 * 109.46727 * 300.00215 * 1 2 3 29 29 H 1.09002 * 109.47164 * 59.99643 * 1 2 3 30 30 H 1.08998 * 109.47212 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46829 * 59.99977 * 5 3 2 32 32 H 1.08999 * 109.47120 * 300.00079 * 5 3 2 33 33 H 0.97001 * 120.00235 * 180.02562 * 10 9 7 34 34 H 1.09000 * 109.47124 * 149.99784 * 15 6 5 35 35 H 1.09005 * 109.46904 * 30.00263 * 15 6 5 36 36 H 1.08001 * 126.97014 * 0.03754 * 17 16 15 37 37 H 1.08001 * 120.02760 * 359.97438 * 20 19 18 38 38 H 1.08000 * 119.96943 * 180.25329 * 21 20 19 39 39 H 1.08000 * 119.97771 * 179.97438 * 24 22 21 40 40 H 1.07995 * 120.03143 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 -0.0006 6 7 3.9818 2.6797 -0.0011 7 6 4.1923 3.3310 -1.1871 8 1 4.6475 4.3104 -1.1920 9 6 3.8203 2.7326 -2.3831 10 7 2.8678 1.8244 -2.3964 11 14 4.6719 3.2161 -3.9739 12 1 5.9159 2.4206 -4.1311 13 1 3.7663 2.9508 -5.1206 14 1 5.0104 4.6616 -3.9346 15 6 4.1720 3.3877 1.2672 16 6 2.8749 4.0333 1.6816 17 6 1.9468 3.5190 2.5223 18 7 0.9529 4.4459 2.5982 19 6 -0.2196 4.3352 3.3601 20 6 -0.4479 3.1985 4.1237 21 6 -1.6004 3.0944 4.8775 22 6 -2.5327 4.1170 4.8632 23 17 -3.9835 3.9804 5.8066 24 6 -2.3100 5.2486 4.0983 25 6 -1.1565 5.3596 3.3469 26 7 1.2762 5.4416 1.8491 27 7 2.4143 5.2267 1.2902 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 3.9557 0.7809 -0.8909 32 1 3.9564 0.7805 0.8891 33 1 2.6081 1.4060 -3.2321 34 1 4.9366 4.1548 1.1440 35 1 4.4873 2.6805 2.0344 36 1 1.9870 2.5665 3.0299 37 1 0.2772 2.3981 4.1314 38 1 -1.7765 2.2120 5.4749 39 1 -3.0391 6.0453 4.0883 40 1 -0.9829 6.2430 2.7505 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089400890.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:48 Heat of formation + Delta-G solvation = 80.165340 kcal Electronic energy + Delta-G solvation = -28855.906425 eV Core-core repulsion = 24701.008366 eV Total energy + Delta-G solvation = -4154.898058 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 350.093 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.83923 -39.56865 -38.95480 -36.87494 -36.17675 -34.65696 -34.08998 -32.13588 -31.56348 -30.28809 -29.62670 -28.21903 -26.33722 -25.87906 -24.09852 -23.46891 -22.17852 -21.20757 -20.37356 -19.72591 -18.30638 -16.94691 -16.87843 -16.27343 -16.08807 -15.61893 -15.41772 -15.21403 -15.14608 -14.70246 -14.27850 -13.87909 -13.84042 -13.68697 -13.42697 -13.25772 -12.63551 -12.38850 -12.23669 -12.04152 -11.96914 -11.67110 -11.31272 -11.15689 -11.08165 -10.97612 -10.89689 -10.55257 -10.37373 -10.18880 -10.11536 -9.92618 -9.66550 -9.49712 -9.17146 -8.70201 -8.55412 -8.36490 -7.22001 -5.96140 -3.22991 0.44101 0.86442 1.76086 2.20596 2.58874 3.21171 3.37135 3.38842 3.45113 3.47397 3.83273 4.02950 4.27914 4.43020 4.48556 4.68489 4.80898 4.93550 5.17604 5.23933 5.33517 5.41608 5.50227 5.60241 5.63212 5.73049 5.76940 5.78421 5.83118 6.03770 6.07620 6.20643 6.22081 6.39014 6.54152 6.64877 6.79189 7.00543 7.13988 7.68221 7.78332 8.09522 8.97158 9.07160 9.37233 9.65394 10.04301 11.15000 Molecular weight = 350.09amu Principal moments of inertia in cm(-1) A = 0.016305 B = 0.003071 C = 0.002833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.823444 B = 9116.019584 C = 9881.455480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 O -0.384 6.384 3 C 0.460 3.540 4 O -0.496 6.496 5 C 0.185 3.815 6 N -0.552 5.552 7 C -0.245 4.245 8 H 0.087 0.913 9 C 0.001 3.999 10 N -0.902 5.902 11 Si 0.912 3.088 12 H -0.285 1.285 13 H -0.294 1.294 14 H -0.279 1.279 15 C 0.215 3.785 16 C 0.007 3.993 17 C -0.048 4.048 18 N -0.256 5.256 19 C 0.157 3.843 20 C -0.114 4.114 21 C -0.087 4.087 22 C -0.043 4.043 23 Cl -0.067 7.067 24 C -0.088 4.088 25 C -0.098 4.098 26 N -0.094 5.094 27 N -0.232 5.232 28 H 0.040 0.960 29 H 0.051 0.949 30 H 0.079 0.921 31 H 0.116 0.884 32 H 0.054 0.946 33 H 0.257 0.743 34 H 0.077 0.923 35 H 0.065 0.935 36 H 0.175 0.825 37 H 0.142 0.858 38 H 0.144 0.856 39 H 0.144 0.856 40 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.588 -1.827 16.485 18.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 O -0.302 6.302 3 C 0.299 3.701 4 O -0.380 6.380 5 C 0.056 3.944 6 N -0.269 5.269 7 C -0.374 4.374 8 H 0.105 0.895 9 C -0.196 4.196 10 N -0.547 5.547 11 Si 0.742 3.258 12 H -0.212 1.212 13 H -0.221 1.221 14 H -0.204 1.204 15 C 0.085 3.915 16 C -0.131 4.131 17 C -0.195 4.195 18 N -0.044 5.044 19 C 0.064 3.936 20 C -0.135 4.135 21 C -0.106 4.106 22 C -0.070 4.070 23 Cl -0.038 7.038 24 C -0.107 4.107 25 C -0.119 4.119 26 N -0.072 5.072 27 N -0.101 5.101 28 H 0.059 0.941 29 H 0.070 0.930 30 H 0.097 0.903 31 H 0.134 0.866 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.095 0.905 35 H 0.083 0.917 36 H 0.192 0.808 37 H 0.160 0.840 38 H 0.162 0.838 39 H 0.162 0.838 40 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -8.293 -0.203 15.807 17.851 hybrid contribution -0.464 -0.887 -0.700 1.221 sum -8.757 -1.090 15.107 17.495 Atomic orbital electron populations 1.22790 0.80135 1.01089 1.00941 1.86556 1.20670 1.37060 1.85915 1.25554 0.93507 0.80262 0.70743 1.90515 1.66453 1.36154 1.44862 1.20605 0.85624 0.86463 1.01735 1.44629 1.74015 1.06752 1.01551 1.19410 1.32892 1.02756 0.82341 0.89518 1.24792 0.97113 0.99580 0.98164 1.69835 1.27030 1.31398 1.26465 0.86122 0.78945 0.78288 0.82431 1.21236 1.22063 1.20397 1.19576 0.89166 0.94539 0.88174 1.23512 1.01872 0.92353 0.95329 1.23196 0.90529 0.98114 1.07639 1.44488 1.14239 1.14391 1.31300 1.17755 0.85661 0.96240 0.93909 1.20868 0.98693 0.96842 0.97147 1.20853 0.92187 0.98461 0.99084 1.20970 0.90263 0.97098 0.98706 1.98377 1.36087 1.98019 1.71304 1.20952 0.97334 0.97065 0.95387 1.20960 0.92259 0.99075 0.99596 1.78217 1.11590 1.11121 1.06247 1.74985 1.02042 1.16406 1.16640 0.94104 0.93048 0.90258 0.86605 0.92849 0.93247 0.90475 0.91662 0.80807 0.84019 0.83802 0.83815 0.83142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.80 10.56 101.05 1.07 1.87 16 2 O -0.38 -8.03 10.57 -39.26 -0.41 -8.45 16 3 C 0.46 10.62 6.04 36.01 0.22 10.84 16 4 O -0.50 -12.92 13.34 -18.75 -0.25 -13.17 16 5 C 0.19 4.03 5.58 -5.20 -0.03 4.00 16 6 N -0.55 -12.69 2.08 -175.99 -0.37 -13.06 16 7 C -0.25 -6.42 9.70 -15.06 -0.15 -6.56 16 8 H 0.09 2.29 7.93 -52.48 -0.42 1.88 16 9 C 0.00 0.03 4.88 -17.43 -0.09 -0.05 16 10 N -0.90 -25.12 9.01 55.49 0.50 -24.62 16 11 Si 0.91 21.58 29.62 -169.99 -5.04 16.54 16 12 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 13 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 14 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 15 C 0.21 4.11 6.27 -5.20 -0.03 4.08 16 16 C 0.01 0.15 5.63 -82.77 -0.47 -0.31 16 17 C -0.05 -0.85 9.62 -16.67 -0.16 -1.01 16 18 N -0.26 -4.59 3.56 -10.46 -0.04 -4.63 16 19 C 0.16 2.26 6.68 -83.56 -0.56 1.70 16 20 C -0.11 -1.30 9.46 -39.41 -0.37 -1.67 16 21 C -0.09 -0.82 9.82 -39.57 -0.39 -1.21 16 22 C -0.04 -0.42 6.32 -39.47 -0.25 -0.67 16 23 Cl -0.07 -0.59 28.95 -51.86 -1.50 -2.09 16 24 C -0.09 -0.89 9.82 -39.57 -0.39 -1.28 16 25 C -0.10 -1.24 9.62 -39.41 -0.38 -1.62 16 26 N -0.09 -1.97 12.42 60.35 0.75 -1.22 16 27 N -0.23 -5.30 12.39 33.29 0.41 -4.89 16 28 H 0.04 0.68 8.13 -51.93 -0.42 0.26 16 29 H 0.05 1.00 8.13 -51.93 -0.42 0.58 16 30 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 31 H 0.12 2.76 6.32 -51.93 -0.33 2.44 16 32 H 0.05 0.94 7.91 -51.93 -0.41 0.53 16 33 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 34 H 0.08 1.44 8.03 -51.93 -0.42 1.02 16 35 H 0.07 0.99 7.90 -51.93 -0.41 0.58 16 36 H 0.17 2.47 7.11 -52.49 -0.37 2.10 16 37 H 0.14 1.40 6.77 -52.49 -0.36 1.05 16 38 H 0.14 1.02 8.06 -52.49 -0.42 0.59 16 39 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 40 H 0.15 1.94 7.69 -52.49 -0.40 1.53 16 LS Contribution 361.73 15.07 5.45 5.45 Total: -1.00 -33.67 361.73 -6.83 -40.50 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -4.36 Total: 1.55 kcal Atomic # 6 Polarization: 10.06 SS G_CDS: -1.97 Total: 8.09 kcal Atomic # 7 Polarization: -49.68 SS G_CDS: 1.26 Total: -48.42 kcal Atomic # 8 Polarization: -20.95 SS G_CDS: -0.66 Total: -21.62 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.04 Total: 16.54 kcal Atomic # 17 Polarization: -0.59 SS G_CDS: -1.50 Total: -2.09 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.67 -6.83 -40.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089400890.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.664 kcal (2) G-P(sol) polarization free energy of solvation -33.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.499 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds