Wall clock time and date at job start Tue Mar 31 2020 06:40:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86796 * 119.99631 * 2 1 4 4 H 1.48505 * 109.47055 * 239.99718 * 3 2 1 5 5 H 1.48503 * 109.47706 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47057 * 120.00023 * 3 2 1 7 7 C 1.37875 * 119.99853 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99655 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00216 * 359.97438 * 7 2 1 10 10 N 1.46503 * 109.46968 * 179.97438 * 9 7 2 11 11 C 1.46502 * 119.99541 * 90.00322 * 10 9 7 12 12 C 1.50700 * 109.46866 * 269.99568 * 11 10 9 13 13 C 1.38228 * 119.61729 * 95.02869 * 12 11 10 14 14 C 1.38630 * 119.16443 * 179.74573 * 13 12 11 15 15 C 1.38679 * 118.41618 * 0.46757 * 14 13 12 16 16 C 1.38177 * 119.16276 * 359.50949 * 15 14 13 17 17 N 1.31849 * 119.62099 * 275.00078 * 12 11 10 18 18 C 1.34770 * 120.00213 * 270.00077 * 10 9 7 19 19 O 1.21593 * 120.00028 * 180.02562 * 18 10 9 20 20 N 1.34775 * 119.99916 * 359.97438 * 18 10 9 21 21 C 1.39945 * 120.00099 * 175.39857 * 20 18 10 22 22 C 1.38893 * 120.10366 * 35.07905 * 21 20 18 23 23 C 1.37971 * 119.85856 * 180.02562 * 22 21 20 24 24 C 1.38562 * 120.31511 * 0.02562 * 23 22 21 25 25 C 1.38283 * 119.95767 * 0.02562 * 24 23 22 26 26 C 1.38386 * 119.91812 * 359.72219 * 25 24 23 27 27 C 1.51382 * 109.75129 * 180.02562 * 25 24 23 28 28 C 1.54337 * 105.17214 * 342.79950 * 27 25 24 29 29 C 1.51392 * 130.30856 * 180.02562 * 24 23 22 30 30 H 0.96998 * 119.99767 * 0.02562 * 1 2 3 31 31 H 1.09001 * 109.46905 * 60.00348 * 9 7 2 32 32 H 1.09002 * 109.47392 * 299.99998 * 9 7 2 33 33 H 1.09001 * 109.46822 * 150.00130 * 11 10 9 34 34 H 1.08997 * 109.47607 * 29.99853 * 11 10 9 35 35 H 1.08004 * 120.41707 * 359.94640 * 13 12 11 36 36 H 1.07997 * 120.79092 * 180.22689 * 14 13 12 37 37 H 1.07993 * 120.41478 * 179.78217 * 15 14 13 38 38 H 1.07999 * 119.61984 * 180.25178 * 16 15 14 39 39 H 0.97001 * 120.00140 * 355.40305 * 20 18 10 40 40 H 1.07992 * 120.06745 * 0.02562 * 22 21 20 41 41 H 1.08006 * 119.84164 * 179.97438 * 23 22 21 42 42 H 1.07999 * 119.91568 * 180.27375 * 26 25 24 43 43 H 1.08996 * 110.30060 * 223.87171 * 27 25 24 44 44 H 1.09000 * 110.38219 * 101.76672 * 27 25 24 45 45 H 1.08995 * 110.82411 * 268.14318 * 28 27 25 46 46 H 1.09008 * 110.99198 * 144.67848 * 28 27 25 47 47 H 1.09006 * 110.30128 * 316.11314 * 29 24 23 48 48 H 1.09005 * 110.30381 * 78.25084 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0847 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2032 -3.6126 -0.0018 11 6 2.6801 -4.1699 1.2664 12 6 3.9235 -3.4377 1.7008 13 6 3.8196 -2.3786 2.5830 14 6 4.9701 -1.7151 2.9805 15 6 6.1866 -2.1373 2.4658 16 6 6.2126 -3.2043 1.5881 17 7 5.0981 -3.8150 1.2354 18 6 2.6402 -4.1243 -1.1695 19 8 3.4300 -5.0488 -1.1704 20 7 2.2010 -3.6119 -2.3361 21 6 2.7265 -4.0774 -3.5467 22 6 3.0795 -5.4136 -3.6850 23 6 3.5976 -5.8670 -4.8807 24 6 3.7681 -4.9955 -5.9443 25 6 3.4186 -3.6644 -5.8093 26 6 2.8937 -3.2065 -4.6135 27 6 3.6986 -2.9283 -7.1021 28 6 4.6569 -3.8462 -7.8902 29 6 4.3072 -5.2437 -7.3371 30 1 -0.4850 0.8400 -0.0004 31 1 0.6242 -2.5567 -0.8903 32 1 0.6248 -2.5571 0.8897 33 1 2.9084 -5.2277 1.1354 34 1 1.9073 -4.0564 2.0267 35 1 2.8546 -2.0740 2.9604 36 1 4.9197 -0.8866 3.6714 37 1 7.1026 -1.6413 2.7508 38 1 7.1564 -3.5418 1.1860 39 1 1.5207 -2.9205 -2.3366 40 1 2.9486 -6.0962 -2.8585 41 1 3.8723 -6.9060 -4.9878 42 1 2.6166 -2.1679 -4.5095 43 1 4.1762 -1.9705 -6.8960 44 1 2.7748 -2.7771 -7.6606 45 1 5.6960 -3.5949 -7.6781 46 1 4.4576 -3.7918 -8.9605 47 1 5.2003 -5.8670 -7.2914 48 1 3.5466 -5.7166 -7.9584 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089883699.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:07 Heat of formation + Delta-G solvation = 38.306331 kcal Electronic energy + Delta-G solvation = -30829.331911 eV Core-core repulsion = 26848.999086 eV Total energy + Delta-G solvation = -3980.332825 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 351.169 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.35191 -39.74079 -38.98592 -36.14744 -34.94845 -33.41830 -32.75499 -31.95703 -31.25180 -30.75894 -28.11047 -27.68572 -27.03875 -25.64497 -23.19529 -22.90672 -22.44402 -21.96503 -20.78007 -20.65212 -18.94138 -17.63719 -16.85055 -16.46228 -16.26997 -15.74658 -15.59315 -15.41329 -15.18005 -14.95267 -14.75089 -14.50097 -14.06367 -13.50071 -13.20855 -13.03132 -12.97975 -12.82192 -12.78152 -12.66451 -12.42861 -12.26841 -11.84301 -11.74944 -11.45447 -11.36262 -11.27940 -11.14577 -11.03082 -10.96701 -10.79846 -10.54157 -10.28067 -9.87117 -9.57149 -9.41203 -9.22473 -8.94455 -8.67461 -8.52423 -8.38532 -7.87103 -7.39853 -6.25813 -4.32639 1.52422 1.68159 1.74485 1.76853 3.17809 3.23404 3.25736 3.32997 3.79315 4.22371 4.26774 4.27680 4.57996 4.67314 4.75081 4.78819 4.98872 5.07339 5.19470 5.21797 5.27684 5.34966 5.40763 5.46515 5.58714 5.69712 5.72902 5.77412 5.80560 5.81870 5.87298 5.96043 6.05824 6.12464 6.17382 6.19563 6.23694 6.38030 6.55088 6.60287 6.62323 6.69379 6.79736 6.94189 6.99766 7.02828 7.14671 7.33340 7.53965 7.70110 7.72331 7.96478 8.51119 8.56079 8.79546 9.27797 9.37479 10.80299 Molecular weight = 351.17amu Principal moments of inertia in cm(-1) A = 0.009232 B = 0.003599 C = 0.003075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3032.301872 B = 7778.417109 C = 9102.747517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.068 3.932 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.531 4.531 8 H 0.059 0.941 9 C 0.239 3.761 10 N -0.607 5.607 11 C 0.189 3.811 12 C 0.123 3.877 13 C -0.132 4.132 14 C -0.085 4.085 15 C -0.181 4.181 16 C 0.087 3.913 17 N -0.458 5.458 18 C 0.710 3.290 19 O -0.583 6.583 20 N -0.683 5.683 21 C 0.186 3.814 22 C -0.122 4.122 23 C -0.091 4.091 24 C -0.131 4.131 25 C -0.082 4.082 26 C -0.140 4.140 27 C -0.080 4.080 28 C -0.120 4.120 29 C -0.075 4.075 30 H 0.266 0.734 31 H 0.031 0.969 32 H 0.041 0.959 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.136 0.864 36 H 0.127 0.873 37 H 0.125 0.875 38 H 0.146 0.854 39 H 0.416 0.584 40 H 0.142 0.858 41 H 0.117 0.883 42 H 0.122 0.878 43 H 0.072 0.928 44 H 0.077 0.923 45 H 0.069 0.931 46 H 0.072 0.928 47 H 0.069 0.931 48 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.956 -6.056 -5.438 10.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.135 4.135 3 Si 0.719 3.281 4 H -0.202 1.202 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.570 4.570 8 H 0.077 0.923 9 C 0.119 3.881 10 N -0.341 5.341 11 C 0.064 3.936 12 C -0.017 4.017 13 C -0.153 4.153 14 C -0.111 4.111 15 C -0.202 4.202 16 C -0.071 4.071 17 N -0.167 5.167 18 C 0.412 3.588 19 O -0.461 6.461 20 N -0.331 5.331 21 C 0.089 3.911 22 C -0.143 4.143 23 C -0.110 4.110 24 C -0.132 4.132 25 C -0.083 4.083 26 C -0.161 4.161 27 C -0.117 4.117 28 C -0.158 4.158 29 C -0.112 4.112 30 H 0.076 0.924 31 H 0.049 0.951 32 H 0.059 0.941 33 H 0.108 0.892 34 H 0.107 0.893 35 H 0.154 0.846 36 H 0.145 0.855 37 H 0.143 0.857 38 H 0.163 0.837 39 H 0.255 0.745 40 H 0.160 0.840 41 H 0.135 0.865 42 H 0.140 0.860 43 H 0.091 0.909 44 H 0.095 0.905 45 H 0.088 0.912 46 H 0.091 0.909 47 H 0.087 0.913 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 6.334 -7.263 -5.904 11.302 hybrid contribution 0.141 2.590 0.752 2.701 sum 6.475 -4.673 -5.152 9.502 Atomic orbital electron populations 1.69904 1.05865 1.27429 1.49715 1.24890 0.94758 0.99068 0.94787 0.86650 0.79632 0.82899 0.78911 1.20244 1.21128 1.20127 1.21429 0.93503 0.90237 1.51834 0.92266 1.19402 0.87325 0.83008 0.98403 1.47315 1.47181 1.36858 1.02713 1.19990 0.90917 0.97291 0.85403 1.21694 0.93754 0.94019 0.92225 1.21994 0.99465 0.95651 0.98177 1.21496 0.92581 0.98514 0.98539 1.22031 0.98574 0.99283 1.00269 1.22643 0.96729 0.92951 0.94760 1.67580 0.98140 1.29474 1.21470 1.15749 0.80418 0.82088 0.80522 1.90857 1.37997 1.31156 1.86121 1.42847 1.43705 1.43605 1.02978 1.17408 0.96425 0.92160 0.85069 1.21239 1.00854 0.94511 0.97682 1.20432 0.99705 0.98922 0.91896 1.20433 1.02908 0.94315 0.95585 1.20196 0.98902 0.94918 0.94245 1.20339 1.03964 0.99175 0.92657 1.20998 0.99548 0.98438 0.92677 1.22267 0.99573 0.94671 0.99249 1.20938 1.00271 0.97445 0.92575 0.92442 0.95117 0.94137 0.89154 0.89323 0.84602 0.85499 0.85698 0.83663 0.74507 0.83988 0.86544 0.86003 0.90948 0.90455 0.91179 0.90916 0.91263 0.90833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.35 13.29 55.43 0.74 -22.61 16 2 C 0.07 1.72 5.46 -17.82 -0.10 1.63 16 3 Si 0.89 20.29 29.54 -169.99 -5.02 15.27 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 7 C -0.53 -13.12 9.24 -34.44 -0.32 -13.44 16 8 H 0.06 1.58 7.81 -52.48 -0.41 1.17 16 9 C 0.24 5.33 5.01 -5.19 -0.03 5.30 16 10 N -0.61 -12.57 2.44 -182.18 -0.44 -13.01 16 11 C 0.19 3.49 5.76 -5.19 -0.03 3.46 16 12 C 0.12 2.33 6.36 -82.59 -0.53 1.81 16 13 C -0.13 -2.32 9.57 -39.44 -0.38 -2.70 16 14 C -0.09 -1.34 10.18 -39.27 -0.40 -1.74 16 15 C -0.18 -2.71 10.11 -39.44 -0.40 -3.10 16 16 C 0.09 1.45 11.18 -17.55 -0.20 1.26 16 17 N -0.46 -9.06 10.27 -9.47 -0.10 -9.16 16 18 C 0.71 15.33 8.12 -86.93 -0.71 14.62 16 19 O -0.58 -13.48 13.36 5.28 0.07 -13.41 16 20 N -0.68 -13.63 5.22 -14.25 -0.07 -13.71 16 21 C 0.19 3.47 6.30 -83.73 -0.53 2.95 16 22 C -0.12 -2.19 8.70 -39.44 -0.34 -2.53 16 23 C -0.09 -1.39 10.03 -39.56 -0.40 -1.79 16 24 C -0.13 -1.88 6.14 -104.15 -0.64 -2.52 16 25 C -0.08 -1.22 6.13 -104.22 -0.64 -1.86 16 26 C -0.14 -2.38 9.96 -39.35 -0.39 -2.77 16 27 C -0.08 -0.92 6.77 -26.85 -0.18 -1.10 16 28 C -0.12 -1.17 7.08 -25.34 -0.18 -1.35 16 29 C -0.08 -0.81 6.77 -26.86 -0.18 -0.99 16 30 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 31 H 0.03 0.71 6.30 -51.93 -0.33 0.38 16 32 H 0.04 0.93 7.89 -51.93 -0.41 0.52 16 33 H 0.09 1.67 7.42 -51.93 -0.39 1.29 16 34 H 0.09 1.40 7.79 -51.93 -0.40 1.00 16 35 H 0.14 2.28 8.06 -52.48 -0.42 1.86 16 36 H 0.13 1.67 8.06 -52.49 -0.42 1.24 16 37 H 0.13 1.46 8.06 -52.49 -0.42 1.03 16 38 H 0.15 2.04 8.06 -52.49 -0.42 1.62 16 39 H 0.42 8.23 6.52 -40.82 -0.27 7.96 16 40 H 0.14 2.71 6.23 -52.49 -0.33 2.39 16 41 H 0.12 1.51 8.06 -52.48 -0.42 1.08 16 42 H 0.12 2.00 8.06 -52.49 -0.42 1.58 16 43 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.07 0.56 8.14 -51.92 -0.42 0.14 16 47 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 48 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 LS Contribution 399.77 15.07 6.02 6.02 Total: -1.00 -30.09 399.77 -12.10 -42.19 By element: Atomic # 1 Polarization: 20.04 SS G_CDS: -6.74 Total: 13.30 kcal Atomic # 6 Polarization: 1.67 SS G_CDS: -6.56 Total: -4.88 kcal Atomic # 7 Polarization: -58.62 SS G_CDS: 0.12 Total: -58.50 kcal Atomic # 8 Polarization: -13.48 SS G_CDS: 0.07 Total: -13.41 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -30.09 -12.10 -42.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089883699.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.495 kcal (2) G-P(sol) polarization free energy of solvation -30.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.189 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds