Wall clock time and date at job start Tue Mar 31 2020 05:18:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43195 * 179.97438 * 2 1 4 4 C 1.40617 * 120.40832 * 149.95244 * 3 2 1 5 5 S 1.76200 * 119.87551 * 359.84519 * 4 3 2 6 6 C 1.81003 * 100.00080 * 179.97438 * 5 4 3 7 7 C 1.50701 * 109.47038 * 179.97438 * 6 5 4 8 8 H 1.08004 * 120.00030 * 359.72943 * 7 6 5 9 9 C 1.37881 * 119.99775 * 179.97438 * 7 6 5 10 10 N 1.31513 * 120.00222 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 119.99733 * 180.02562 * 9 7 6 12 12 H 1.48503 * 109.46752 * 90.00205 * 11 9 7 13 13 H 1.48498 * 109.46700 * 209.99994 * 11 9 7 14 14 H 1.48496 * 109.47033 * 330.00230 * 11 9 7 15 15 N 1.32267 * 120.24867 * 180.12062 * 4 3 2 16 16 C 1.32513 * 121.57975 * 359.62193 * 15 4 3 17 17 C 1.48236 * 119.33585 * 180.31595 * 16 15 4 18 18 C 1.39427 * 120.12809 * 45.22554 * 17 16 15 19 19 C 1.37988 * 119.86716 * 179.76299 * 18 17 16 20 20 C 1.38347 * 120.13067 * 0.51519 * 19 18 17 21 21 C 1.38338 * 120.25657 * 359.74236 * 20 19 18 22 22 C 1.37993 * 120.13517 * 359.97438 * 21 20 19 23 23 C 1.40043 * 121.32809 * 0.57430 * 16 15 4 24 24 C 1.37350 * 119.11885 * 359.52288 * 23 16 15 25 25 C 1.50354 * 122.89427 * 180.41883 * 24 23 16 26 26 C 1.52817 * 110.49346 * 342.51541 * 25 24 23 27 27 C 1.53321 * 108.41752 * 50.75351 * 26 25 24 28 28 C 1.50524 * 118.36410 * 179.36828 * 23 16 15 29 29 H 1.08995 * 109.46796 * 60.00187 * 6 5 4 30 30 H 1.08994 * 109.47118 * 300.00178 * 6 5 4 31 31 H 0.96998 * 120.00025 * 179.97438 * 10 9 7 32 32 H 1.08002 * 120.06674 * 0.02562 * 18 17 16 33 33 H 1.08001 * 119.94115 * 180.23212 * 19 18 17 34 34 H 1.07995 * 119.87255 * 179.71508 * 20 19 18 35 35 H 1.08005 * 119.93213 * 179.97438 * 21 20 19 36 36 H 1.07994 * 120.06728 * 180.02562 * 22 21 20 37 37 H 1.08995 * 109.27210 * 102.78348 * 25 24 23 38 38 H 1.09006 * 109.26908 * 222.29493 * 25 24 23 39 39 H 1.09000 * 109.67285 * 170.47763 * 26 25 24 40 40 H 1.09000 * 109.67691 * 290.98139 * 26 25 24 41 41 H 1.08992 * 109.64274 * 49.99789 * 27 26 25 42 42 H 1.09005 * 109.63480 * 170.40934 * 27 26 25 43 43 H 1.08998 * 109.27085 * 42.15187 * 28 23 16 44 44 H 1.08997 * 109.26455 * 282.67918 * 28 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2792 1.0507 -0.6072 5 16 2.4052 2.3729 -1.3771 6 6 3.7971 3.3759 -1.9541 7 6 3.2750 4.5977 -2.6652 8 1 2.2105 4.7517 -2.7636 9 6 4.1563 5.5165 -3.1946 10 7 5.4525 5.3268 -3.0785 11 14 3.5092 7.0313 -4.0754 12 1 3.3332 8.1350 -3.0976 13 1 4.4775 7.4468 -5.1219 14 1 2.2026 6.7163 -4.7069 15 7 4.6019 1.0469 -0.6075 16 6 5.2931 0.0709 -0.0369 17 6 6.7745 0.1203 -0.0604 18 6 7.4400 1.3078 0.2414 19 6 8.8192 1.3464 0.2227 20 6 9.5413 0.2128 -0.1050 21 6 8.8863 -0.9668 -0.4105 22 6 7.5076 -1.0191 -0.3895 23 6 4.6524 -1.0090 0.5831 24 6 3.2797 -1.0481 0.6062 25 6 2.5052 -2.1611 1.2558 26 6 3.3998 -3.3814 1.4698 27 6 4.6812 -2.9247 2.1771 28 6 5.5030 -2.0882 1.1977 29 1 4.4075 2.7894 -2.6407 30 1 4.4023 3.6824 -1.1010 31 1 6.0725 5.9730 -3.4512 32 1 6.8772 2.1945 0.4934 33 1 9.3360 2.2646 0.4599 34 1 10.6205 0.2490 -0.1228 35 1 9.4553 -1.8485 -0.6661 36 1 6.9974 -1.9407 -0.6278 37 1 2.1250 -1.8204 2.2188 38 1 1.6674 -2.4377 0.6157 39 1 2.8803 -4.1133 2.0882 40 1 3.6502 -3.8263 0.5067 41 1 4.4240 -2.3215 3.0477 42 1 5.2562 -3.7956 2.4917 43 1 6.3376 -1.6299 1.7283 44 1 5.8897 -2.7340 0.4094 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095117565.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:11 Heat of formation + Delta-G solvation = 65.393047 kcal Electronic energy + Delta-G solvation = -27268.337363 eV Core-core repulsion = 23661.524793 eV Total energy + Delta-G solvation = -3606.812569 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 350.115 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.95032 -38.82715 -36.98754 -36.45479 -33.56215 -33.20565 -31.63246 -31.04731 -30.25196 -29.21956 -28.60210 -25.16185 -23.82556 -23.62441 -23.05331 -22.22513 -21.60753 -19.82627 -18.40372 -17.59543 -17.16145 -16.51898 -16.03785 -15.55198 -15.36246 -14.78655 -14.62660 -14.37442 -14.22503 -14.06044 -13.66598 -13.51490 -13.31761 -13.18479 -12.90580 -12.79324 -12.68902 -12.57363 -12.46456 -12.39264 -12.20276 -12.01067 -11.38493 -11.18210 -11.13895 -11.00704 -10.92045 -10.84901 -10.67480 -10.43478 -9.67471 -9.57365 -9.42199 -9.31259 -9.22535 -8.88261 -8.64993 -8.46252 -6.95086 -6.21833 -4.28840 0.41167 1.20752 1.42367 1.46802 2.12891 2.80142 3.08291 3.23929 3.29922 3.32241 3.44855 3.74859 3.90218 3.99739 4.21865 4.32085 4.42718 4.56672 4.64783 4.77555 4.85035 4.92376 4.98228 5.14001 5.14952 5.21934 5.27498 5.36649 5.37310 5.42815 5.51597 5.54842 5.62495 5.69366 5.74999 5.81509 5.93264 5.98287 6.06888 6.09974 6.19279 6.36341 6.51762 6.55767 6.62173 6.97770 7.10781 7.21474 7.63847 7.68000 7.90463 7.94145 8.72102 9.34791 10.88353 Molecular weight = 350.11amu Principal moments of inertia in cm(-1) A = 0.008617 B = 0.004116 C = 0.002842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3248.533706 B = 6801.739358 C = 9850.506317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C 0.270 3.730 3 C -0.094 4.094 4 C 0.177 3.823 5 S -0.086 6.086 6 C 0.078 3.922 7 C -0.528 4.528 8 H 0.065 0.935 9 C 0.072 3.928 10 N -0.882 5.882 11 Si 0.904 3.096 12 H -0.277 1.277 13 H -0.283 1.283 14 H -0.271 1.271 15 N -0.466 5.466 16 C 0.218 3.782 17 C -0.047 4.047 18 C -0.070 4.070 19 C -0.122 4.122 20 C -0.110 4.110 21 C -0.128 4.128 22 C -0.098 4.098 23 C -0.146 4.146 24 C 0.031 3.969 25 C -0.088 4.088 26 C -0.118 4.118 27 C -0.122 4.122 28 C -0.071 4.071 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.266 0.734 32 H 0.131 0.869 33 H 0.125 0.875 34 H 0.121 0.879 35 H 0.123 0.877 36 H 0.128 0.872 37 H 0.087 0.913 38 H 0.080 0.920 39 H 0.071 0.929 40 H 0.069 0.931 41 H 0.067 0.933 42 H 0.070 0.930 43 H 0.082 0.918 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.057 -18.049 10.680 22.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.091 5.091 2 C -0.046 4.046 3 C -0.109 4.109 4 C -0.074 4.074 5 S 0.162 5.838 6 C -0.069 4.069 7 C -0.568 4.568 8 H 0.084 0.916 9 C -0.133 4.133 10 N -0.519 5.519 11 Si 0.731 3.269 12 H -0.203 1.203 13 H -0.209 1.209 14 H -0.196 1.196 15 N -0.177 5.177 16 C 0.074 3.926 17 C -0.048 4.048 18 C -0.088 4.088 19 C -0.140 4.140 20 C -0.128 4.128 21 C -0.146 4.146 22 C -0.117 4.117 23 C -0.153 4.153 24 C 0.020 3.980 25 C -0.125 4.125 26 C -0.155 4.155 27 C -0.159 4.159 28 C -0.108 4.108 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.148 0.852 33 H 0.143 0.857 34 H 0.139 0.861 35 H 0.141 0.859 36 H 0.146 0.854 37 H 0.105 0.895 38 H 0.099 0.901 39 H 0.089 0.911 40 H 0.088 0.912 41 H 0.086 0.914 42 H 0.089 0.911 43 H 0.100 0.900 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 4.611 -16.874 9.988 20.144 hybrid contribution 1.087 0.220 -0.157 1.120 sum 5.697 -16.655 9.831 20.162 Atomic orbital electron populations 1.81167 1.11555 1.07677 1.08712 1.25086 0.92073 0.93693 0.93720 1.16555 0.85530 0.98999 1.09785 1.23710 0.92272 0.96683 0.94686 1.86006 1.17623 1.17144 1.63019 1.21294 0.90374 0.95236 1.00008 1.20680 0.93591 1.05080 1.37403 0.91645 1.24910 0.94668 0.98114 0.95620 1.69968 1.01283 1.36147 1.44536 0.86394 0.78884 0.82309 0.79348 1.20274 1.20857 1.19550 1.68384 1.05572 1.25440 1.18289 1.20098 0.92989 0.88871 0.90690 1.18417 0.89484 0.94530 1.02334 1.21334 0.94341 0.96839 0.96330 1.21144 0.93920 0.98571 1.00331 1.21249 0.99879 0.93062 0.98654 1.20998 0.94024 0.98215 1.01391 1.21302 0.94010 0.97588 0.98822 1.20053 0.92713 0.98432 1.04081 1.19569 0.92582 0.93138 0.92691 1.20568 0.97857 0.93076 1.01049 1.21562 0.96030 0.96556 1.01359 1.21606 0.96292 0.99700 0.98315 1.20554 0.97197 0.94772 0.98287 0.92837 0.92891 0.92415 0.85152 0.85657 0.86111 0.85889 0.85388 0.89480 0.90126 0.91065 0.91221 0.91445 0.91097 0.89996 0.90220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -7.45 18.54 41.84 0.78 -6.67 16 2 C 0.27 4.58 12.87 -22.48 -0.29 4.29 16 3 C -0.09 -1.54 5.79 -106.23 -0.61 -2.16 16 4 C 0.18 3.42 7.01 -16.47 -0.12 3.30 16 5 S -0.09 -1.90 20.97 -107.50 -2.25 -4.15 16 6 C 0.08 2.01 4.60 36.01 0.17 2.18 16 7 C -0.53 -14.67 9.13 -34.44 -0.31 -14.98 16 8 H 0.07 1.80 7.71 -52.48 -0.40 1.40 16 9 C 0.07 1.99 5.46 -17.82 -0.10 1.90 16 10 N -0.88 -25.27 13.29 55.43 0.74 -24.53 16 11 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 16 12 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 13 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 14 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 15 N -0.47 -8.91 8.91 -8.18 -0.07 -8.98 16 16 C 0.22 3.38 6.36 -82.79 -0.53 2.85 16 17 C -0.05 -0.65 4.97 -104.90 -0.52 -1.17 16 18 C -0.07 -1.01 9.66 -39.23 -0.38 -1.39 16 19 C -0.12 -1.48 10.03 -39.63 -0.40 -1.88 16 20 C -0.11 -1.14 10.04 -39.50 -0.40 -1.54 16 21 C -0.13 -1.27 10.03 -39.63 -0.40 -1.67 16 22 C -0.10 -1.10 7.88 -39.23 -0.31 -1.41 16 23 C -0.15 -1.85 5.72 -104.35 -0.60 -2.45 16 24 C 0.03 0.40 5.77 -104.27 -0.60 -0.20 16 25 C -0.09 -0.88 5.09 -28.14 -0.14 -1.02 16 26 C -0.12 -0.88 5.98 -26.66 -0.16 -1.04 16 27 C -0.12 -0.88 5.97 -26.67 -0.16 -1.04 16 28 C -0.07 -0.63 4.04 -28.08 -0.11 -0.74 16 29 H 0.05 1.48 8.12 -51.92 -0.42 1.05 16 30 H 0.05 1.44 8.13 -51.92 -0.42 1.02 16 31 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 32 H 0.13 2.07 8.06 -52.49 -0.42 1.65 16 33 H 0.13 1.33 8.06 -52.49 -0.42 0.90 16 34 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 35 H 0.12 0.89 8.06 -52.48 -0.42 0.46 16 36 H 0.13 1.18 5.76 -52.49 -0.30 0.88 16 37 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.08 0.83 7.47 -51.93 -0.39 0.44 16 39 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.07 0.52 8.10 -51.93 -0.42 0.09 16 41 H 0.07 0.51 8.10 -51.93 -0.42 0.09 16 42 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 43 H 0.08 0.73 6.93 -51.93 -0.36 0.37 16 44 H 0.08 0.61 6.26 -51.93 -0.33 0.28 16 LS Contribution 380.50 15.07 5.73 5.73 Total: -1.00 -30.61 380.50 -11.63 -42.24 By element: Atomic # 1 Polarization: 3.97 SS G_CDS: -5.56 Total: -1.59 kcal Atomic # 6 Polarization: -12.20 SS G_CDS: -5.97 Total: -18.16 kcal Atomic # 7 Polarization: -41.62 SS G_CDS: 1.44 Total: -40.18 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 16 Polarization: -1.90 SS G_CDS: -2.25 Total: -4.15 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -30.61 -11.63 -42.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095117565.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.633 kcal (2) G-P(sol) polarization free energy of solvation -30.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.240 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds