Wall clock time and date at job start Tue Mar 31 2020 05:42:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.46625 * 2 1 4 4 C 1.52998 * 109.47312 * 120.00421 * 2 1 3 5 5 C 1.52996 * 117.50025 * 8.62291 * 4 2 1 6 6 C 1.52998 * 60.00091 * 252.51073 * 5 4 2 7 7 N 1.46501 * 109.47031 * 240.00509 * 2 1 3 8 8 C 1.46499 * 120.00307 * 304.79017 * 7 2 1 9 9 C 1.50704 * 109.46960 * 270.00307 * 8 7 2 10 10 H 1.07996 * 119.99857 * 359.97438 * 9 8 7 11 11 C 1.37875 * 119.99941 * 179.97438 * 9 8 7 12 12 N 1.31518 * 120.00127 * 359.97438 * 11 9 8 13 13 Si 1.86793 * 120.00089 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.47341 * 59.99433 * 13 11 9 15 15 H 1.48505 * 109.47620 * 179.97438 * 13 11 9 16 16 H 1.48504 * 109.47054 * 299.99903 * 13 11 9 17 17 C 1.34783 * 119.99879 * 124.78635 * 7 2 1 18 18 O 1.21673 * 120.00158 * 4.78171 * 17 7 2 19 19 C 1.46600 * 119.99770 * 184.78021 * 17 7 2 20 20 C 1.34852 * 119.99703 * 174.77266 * 19 17 7 21 21 C 1.47047 * 119.99973 * 180.02562 * 20 19 17 22 22 C 1.39478 * 121.43215 * 0.02562 * 21 20 19 23 23 C 1.38958 * 119.43967 * 179.97438 * 22 21 20 24 24 N 1.30944 * 122.60833 * 0.02562 * 23 22 21 25 25 C 1.33528 * 122.46615 * 359.95244 * 24 23 22 26 26 C 1.40655 * 121.19059 * 180.02562 * 25 24 23 27 27 C 1.36109 * 119.71753 * 179.97438 * 26 25 24 28 28 C 1.39305 * 121.09251 * 0.04193 * 27 26 25 29 29 C 1.36359 * 120.80467 * 359.97438 * 28 27 26 30 30 C 1.39852 * 119.56546 * 359.97438 * 29 28 27 31 31 H 1.09002 * 109.46940 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47204 * 299.99119 * 1 2 3 33 33 H 1.08995 * 109.47773 * 59.99615 * 1 2 3 34 34 H 1.09001 * 115.54711 * 154.32972 * 4 2 1 35 35 H 1.09006 * 117.49810 * 359.97438 * 5 4 2 36 36 H 1.08996 * 117.49889 * 145.02182 * 5 4 2 37 37 H 1.09005 * 117.49817 * 252.50958 * 6 5 4 38 38 H 1.08999 * 117.49993 * 107.48717 * 6 5 4 39 39 H 1.09004 * 109.46747 * 29.99646 * 8 7 2 40 40 H 1.08996 * 109.47451 * 149.99622 * 8 7 2 41 41 H 0.96997 * 120.00033 * 180.02562 * 12 11 9 42 42 H 1.08000 * 120.00339 * 354.77372 * 19 17 7 43 43 H 1.07997 * 120.00695 * 0.02562 * 20 19 17 44 44 H 1.07999 * 120.28640 * 0.02562 * 22 21 20 45 45 H 1.08002 * 118.70004 * 180.02562 * 23 22 21 46 46 H 1.08002 * 120.14060 * 0.02562 * 26 25 24 47 47 H 1.07997 * 119.45223 * 180.02562 * 27 26 25 48 48 H 1.08001 * 119.59438 * 180.25422 * 28 27 26 49 49 H 1.08000 * 120.21495 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.0105 -1.4543 2.1115 6 6 1.6358 -0.1497 2.6096 7 7 2.0183 -0.6905 -1.1962 8 6 1.5800 -2.0588 -1.4825 9 6 2.5298 -3.0356 -0.8385 10 1 3.3756 -2.6734 -0.2729 11 6 2.3191 -4.3916 -0.9713 12 7 1.2888 -4.8327 -1.6596 13 14 3.4967 -5.6024 -0.1736 14 1 3.5119 -5.3838 1.2951 15 1 3.0518 -6.9895 -0.4626 16 1 4.8627 -5.3966 -0.7187 17 6 2.8708 -0.0669 -2.0335 18 8 3.3029 1.0352 -1.7521 19 6 3.2774 -0.7165 -3.2832 20 6 4.0453 -0.0513 -4.1700 21 6 4.4527 -0.7027 -5.4239 22 6 4.0617 -2.0069 -5.7265 23 6 4.4701 -2.5820 -6.9237 24 7 5.2159 -1.9475 -7.7931 25 6 5.6409 -0.6971 -7.5956 26 6 6.4409 -0.0407 -8.5481 27 6 6.8570 1.2343 -8.3163 28 6 6.5045 1.9047 -7.1471 29 6 5.7305 1.2997 -6.2015 30 6 5.2851 -0.0097 -6.4088 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 -0.3634 0.5138 -0.8899 34 1 3.0324 -1.1641 1.1640 35 1 -0.0303 -1.4222 1.7892 36 1 1.3255 -2.3795 2.5939 37 1 2.3621 -0.2168 3.4196 38 1 1.0065 0.7403 2.6146 39 1 0.5771 -2.2101 -1.0831 40 1 1.5697 -2.2190 -2.5606 41 1 1.1404 -5.7867 -1.7527 42 1 2.9620 -1.7278 -3.4937 43 1 4.3611 0.9597 -3.9595 44 1 3.4460 -2.5649 -5.0365 45 1 4.1600 -3.5923 -7.1461 46 1 6.7232 -0.5459 -9.4600 47 1 7.4708 1.7345 -9.0507 48 1 6.8447 2.9176 -6.9898 49 1 5.4626 1.8285 -5.2987 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095398305.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:56 Heat of formation + Delta-G solvation = 64.860755 kcal Electronic energy + Delta-G solvation = -30107.327519 eV Core-core repulsion = 26193.572092 eV Total energy + Delta-G solvation = -3913.755428 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 350.174 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.61328 -39.53856 -37.50498 -37.06845 -34.91756 -34.68293 -32.63274 -31.55801 -30.56252 -30.07034 -29.21436 -27.27047 -25.31316 -24.21591 -23.66212 -23.19207 -22.48258 -21.89937 -20.67573 -19.08700 -18.14281 -18.04364 -17.32117 -16.79991 -16.55672 -15.99766 -15.92113 -15.11253 -14.63305 -14.44306 -14.37390 -14.32757 -14.27403 -13.96788 -13.67448 -13.46482 -13.15143 -12.90327 -12.51826 -12.39553 -12.02766 -11.85141 -11.71619 -11.60649 -11.45093 -11.37537 -11.15494 -11.09608 -10.99152 -10.91838 -10.79515 -10.56146 -10.34095 -9.89124 -9.65256 -9.48402 -9.42602 -9.24815 -9.17531 -8.80769 -8.57677 -8.00641 -7.74548 -6.21976 -4.27458 0.08069 0.83745 1.38618 2.39045 2.95350 3.20941 3.26512 3.29481 3.66792 3.85388 4.16675 4.27578 4.29448 4.35774 4.49929 4.64213 4.71955 4.79295 5.09494 5.11600 5.12179 5.18342 5.26362 5.30728 5.37945 5.46895 5.50301 5.64775 5.66091 5.73076 5.81552 5.83110 5.87911 5.95477 6.00841 6.07966 6.17852 6.19751 6.27400 6.31861 6.41794 6.48393 6.55349 6.58237 6.61041 6.65035 6.72362 6.80610 6.83810 7.15303 7.47118 7.73328 7.96307 8.01503 8.23609 8.72488 8.88857 9.39235 10.84787 Molecular weight = 350.17amu Principal moments of inertia in cm(-1) A = 0.010830 B = 0.003062 C = 0.002552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2584.757153 B = 9141.285852 C =10969.023242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.172 3.828 3 H 0.091 0.909 4 C -0.136 4.136 5 C -0.167 4.167 6 C -0.192 4.192 7 N -0.578 5.578 8 C 0.235 3.765 9 C -0.527 4.527 10 H 0.060 0.940 11 C 0.068 3.932 12 N -0.892 5.892 13 Si 0.891 3.109 14 H -0.277 1.277 15 H -0.286 1.286 16 H -0.276 1.276 17 C 0.542 3.458 18 O -0.574 6.574 19 C -0.137 4.137 20 C -0.079 4.079 21 C 0.009 3.991 22 C -0.167 4.167 23 C 0.145 3.855 24 N -0.488 5.488 25 C 0.127 3.873 26 C -0.095 4.095 27 C -0.106 4.106 28 C -0.122 4.122 29 C -0.091 4.091 30 C -0.094 4.094 31 H 0.073 0.927 32 H 0.060 0.940 33 H 0.053 0.947 34 H 0.108 0.892 35 H 0.096 0.904 36 H 0.088 0.912 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.042 0.958 40 H 0.036 0.964 41 H 0.265 0.735 42 H 0.146 0.854 43 H 0.136 0.864 44 H 0.151 0.849 45 H 0.161 0.839 46 H 0.133 0.867 47 H 0.127 0.873 48 H 0.126 0.874 49 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.571 8.945 -6.628 11.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.068 3.932 3 H 0.109 0.891 4 C -0.155 4.155 5 C -0.204 4.204 6 C -0.230 4.230 7 N -0.307 5.307 8 C 0.116 3.884 9 C -0.566 4.566 10 H 0.078 0.922 11 C -0.135 4.135 12 N -0.530 5.530 13 Si 0.719 3.281 14 H -0.202 1.202 15 H -0.212 1.212 16 H -0.202 1.202 17 C 0.332 3.668 18 O -0.457 6.457 19 C -0.158 4.158 20 C -0.099 4.099 21 C 0.001 3.999 22 C -0.187 4.187 23 C -0.027 4.027 24 N -0.196 5.196 25 C 0.007 3.993 26 C -0.114 4.114 27 C -0.125 4.125 28 C -0.140 4.140 29 C -0.109 4.109 30 C -0.096 4.096 31 H 0.091 0.909 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.126 0.874 35 H 0.115 0.885 36 H 0.107 0.893 37 H 0.105 0.895 38 H 0.106 0.894 39 H 0.060 0.940 40 H 0.054 0.946 41 H 0.075 0.925 42 H 0.164 0.836 43 H 0.153 0.847 44 H 0.168 0.832 45 H 0.178 0.822 46 H 0.151 0.849 47 H 0.145 0.855 48 H 0.144 0.856 49 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 3.966 8.977 -7.357 12.265 hybrid contribution 0.342 -0.748 1.348 1.579 sum 4.307 8.229 -6.009 11.063 Atomic orbital electron populations 1.22247 0.95501 1.03036 1.01249 1.20339 0.93185 0.96218 0.83474 0.89075 1.22530 1.00495 1.02492 0.90031 1.22957 0.98852 0.95028 1.03561 1.22974 1.04272 0.97846 0.97890 1.48166 1.43771 1.16886 1.21871 1.19495 0.96565 0.75272 0.97091 1.21404 1.11079 0.90563 1.33561 0.92168 1.24869 0.95371 0.98158 0.95133 1.69899 1.28027 1.14839 1.40249 0.86663 0.81340 0.80116 0.80020 1.20203 1.21169 1.20165 1.18229 0.79218 0.84932 0.84425 1.90700 1.56570 1.21480 1.76982 1.23566 0.97364 1.01371 0.93530 1.21972 0.96733 1.00064 0.91126 1.20448 0.93544 0.93179 0.92708 1.22654 1.01812 0.95184 0.99049 1.22779 0.91399 0.99528 0.89020 1.67625 1.11596 1.08325 1.32068 1.18781 0.97196 0.90524 0.92841 1.20787 0.97292 0.94626 0.98690 1.20868 0.99587 0.94597 0.97479 1.20938 0.98685 1.00325 0.94101 1.20959 0.96890 0.93440 0.99658 1.19798 0.99346 0.95440 0.94995 0.90859 0.92082 0.92812 0.87400 0.88549 0.89302 0.89537 0.89406 0.93997 0.94594 0.92506 0.83617 0.84677 0.83162 0.82203 0.84893 0.85505 0.85555 0.84957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.51 7.67 37.16 0.29 -2.22 16 2 C 0.17 3.07 3.02 -67.93 -0.21 2.86 16 3 H 0.09 1.68 6.94 -51.93 -0.36 1.32 16 4 C -0.14 -2.39 4.88 -90.62 -0.44 -2.84 16 5 C -0.17 -2.69 9.57 -26.73 -0.26 -2.94 16 6 C -0.19 -2.76 9.90 -26.73 -0.26 -3.02 16 7 N -0.58 -11.54 2.39 -169.04 -0.40 -11.94 16 8 C 0.24 5.16 4.63 -5.19 -0.02 5.14 16 9 C -0.53 -12.75 8.49 -34.44 -0.29 -13.05 16 10 H 0.06 1.51 6.80 -52.49 -0.36 1.15 16 11 C 0.07 1.68 5.46 -17.82 -0.10 1.59 16 12 N -0.89 -23.12 13.29 55.43 0.74 -22.38 16 13 Si 0.89 19.92 29.54 -169.99 -5.02 14.90 16 14 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 15 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 16 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 17 C 0.54 10.92 7.60 -12.89 -0.10 10.83 16 18 O -0.57 -12.46 15.60 5.21 0.08 -12.38 16 19 C -0.14 -2.45 8.65 -37.41 -0.32 -2.77 16 20 C -0.08 -1.26 9.14 -37.21 -0.34 -1.60 16 21 C 0.01 0.14 6.07 -102.58 -0.62 -0.48 16 22 C -0.17 -2.41 9.50 -38.85 -0.37 -2.78 16 23 C 0.15 1.97 11.09 -17.66 -0.20 1.77 16 24 N -0.49 -7.22 10.26 -11.11 -0.11 -7.34 16 25 C 0.13 1.83 6.62 -84.90 -0.56 1.27 16 26 C -0.10 -1.12 9.99 -39.43 -0.39 -1.52 16 27 C -0.11 -1.04 9.94 -39.95 -0.40 -1.44 16 28 C -0.12 -1.25 9.97 -39.86 -0.40 -1.65 16 29 C -0.09 -1.12 9.48 -39.65 -0.38 -1.49 16 30 C -0.09 -1.35 5.90 -104.69 -0.62 -1.97 16 31 H 0.07 1.22 5.36 -51.93 -0.28 0.94 16 32 H 0.06 0.80 7.07 -51.93 -0.37 0.43 16 33 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.11 2.16 7.10 -51.93 -0.37 1.79 16 35 H 0.10 1.48 5.85 -51.93 -0.30 1.18 16 36 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 37 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 38 H 0.09 1.13 7.61 -51.93 -0.40 0.73 16 39 H 0.04 0.97 6.19 -51.93 -0.32 0.65 16 40 H 0.04 0.81 5.97 -51.93 -0.31 0.50 16 41 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16 42 H 0.15 2.63 4.32 -52.49 -0.23 2.41 16 43 H 0.14 2.08 6.09 -52.49 -0.32 1.76 16 44 H 0.15 2.12 6.32 -52.49 -0.33 1.78 16 45 H 0.16 1.71 8.06 -52.49 -0.42 1.28 16 46 H 0.13 1.35 8.06 -52.49 -0.42 0.92 16 47 H 0.13 0.87 8.06 -52.49 -0.42 0.44 16 48 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 49 H 0.13 1.49 6.54 -52.49 -0.34 1.14 16 LS Contribution 397.07 15.07 5.98 5.98 Total: -1.00 -28.51 397.07 -11.10 -39.62 By element: Atomic # 1 Polarization: 16.23 SS G_CDS: -6.38 Total: 9.85 kcal Atomic # 6 Polarization: -10.32 SS G_CDS: -5.99 Total: -16.31 kcal Atomic # 7 Polarization: -41.88 SS G_CDS: 0.22 Total: -41.66 kcal Atomic # 8 Polarization: -12.46 SS G_CDS: 0.08 Total: -12.38 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.02 Total: 14.90 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -28.51 -11.10 -39.62 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095398305.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.477 kcal (2) G-P(sol) polarization free energy of solvation -28.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds