Wall clock time and date at job start Tue Mar 31 2020 05:28:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.32962 * 125.87483 * 2 1 4 4 N 1.38376 * 108.24209 * 180.02562 * 3 2 1 5 5 H 0.97008 * 126.04868 * 180.02562 * 4 3 2 6 6 C 1.35976 * 107.90789 * 0.02562 * 4 3 2 7 7 N 1.32905 * 126.15238 * 180.02562 * 6 4 3 8 8 C 1.34065 * 120.00109 * 180.02562 * 7 6 4 9 9 O 1.22099 * 119.99896 * 359.97438 * 8 7 6 10 10 C 1.46397 * 120.00196 * 179.97438 * 8 7 6 11 11 C 1.35147 * 120.00135 * 179.97438 * 10 8 7 12 12 C 1.46570 * 119.99935 * 179.97438 * 11 10 8 13 13 C 1.36529 * 126.76945 * 359.95638 * 12 11 10 14 14 N 1.35766 * 109.69597 * 180.02562 * 13 12 11 15 15 C 1.46497 * 124.79992 * 180.02562 * 14 13 12 16 16 C 1.50699 * 109.47402 * 264.97677 * 15 14 13 17 17 H 1.08002 * 119.99766 * 0.02562 * 16 15 14 18 18 C 1.37873 * 119.99867 * 179.97438 * 16 15 14 19 19 N 1.31513 * 120.00231 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99781 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.47205 * 0.02562 * 20 18 16 22 22 H 1.48495 * 109.47219 * 120.00348 * 20 18 16 23 23 H 1.48501 * 109.46874 * 240.00360 * 20 18 16 24 24 C 1.37961 * 110.39679 * 0.02562 * 14 13 12 25 25 C 1.39139 * 133.13940 * 180.02562 * 24 14 13 26 26 C 1.37767 * 119.93063 * 179.76005 * 25 24 14 27 27 C 1.38754 * 120.63367 * 0.51784 * 26 25 24 28 28 C 1.37764 * 120.29869 * 359.45739 * 27 26 25 29 29 C 1.39271 * 119.67726 * 0.27987 * 28 27 26 30 30 N 1.35987 * 107.69886 * 0.25788 * 6 4 3 31 31 H 0.97000 * 126.04601 * 179.69760 * 30 6 4 32 32 H 1.08997 * 109.47775 * 89.96779 * 1 2 3 33 33 H 1.09002 * 109.46924 * 209.97253 * 1 2 3 34 34 H 1.09004 * 109.47168 * 329.96680 * 1 2 3 35 35 H 1.07998 * 125.88321 * 0.04678 * 3 2 1 36 36 H 1.08001 * 119.99772 * 359.97438 * 10 8 7 37 37 H 1.08001 * 120.00096 * 359.97438 * 11 10 8 38 38 H 1.08003 * 125.15358 * 0.05877 * 13 12 11 39 39 H 1.09005 * 109.46915 * 24.98058 * 15 14 13 40 40 H 1.09001 * 109.46843 * 144.97307 * 15 14 13 41 41 H 0.97003 * 120.00102 * 180.02562 * 19 18 16 42 42 H 1.08001 * 120.03031 * 0.02562 * 25 24 14 43 43 H 1.07996 * 119.68463 * 180.25635 * 26 25 24 44 44 H 1.08002 * 119.85296 * 179.74090 * 27 26 25 45 45 H 1.07999 * 120.16164 * 180.30005 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2861 1.0774 0.0000 4 7 3.6049 0.6582 -0.0006 5 1 4.3865 1.2328 -0.0004 6 6 3.6114 -0.7015 -0.0015 7 7 4.6883 -1.4804 -0.0018 8 6 4.5510 -2.8140 -0.0033 9 8 3.4367 -3.3130 -0.0039 10 6 5.7372 -3.6720 -0.0042 11 6 5.5989 -5.0164 -0.0052 12 6 6.7865 -5.8753 -0.0066 13 6 8.0896 -5.4681 -0.0080 14 7 8.9076 -6.5516 -0.0097 15 6 10.3715 -6.4941 -0.0109 16 6 10.8771 -6.5974 -1.4268 17 1 10.1779 -6.6957 -2.2440 18 6 12.2322 -6.5655 -1.6789 19 7 13.0836 -6.4453 -0.6838 20 14 12.8589 -6.6929 -3.4340 21 1 11.7073 -6.8186 -4.3630 22 1 13.6360 -5.4734 -3.7719 23 1 13.7317 -7.8875 -3.5624 24 6 8.1653 -7.7145 -0.0100 25 6 8.5092 -9.0627 -0.0110 26 6 7.5221 -10.0238 -0.0061 27 6 6.1827 -9.6618 -0.0109 28 6 5.8221 -8.3322 -0.0094 29 6 6.8095 -7.3499 -0.0090 30 7 2.3179 -1.1211 -0.0074 31 1 2.0170 -2.0433 -0.0134 32 1 -0.3634 0.0006 -1.0276 33 1 -0.3633 -0.8903 0.5134 34 1 -0.3634 0.8897 0.5144 35 1 1.9480 2.1031 0.0007 36 1 6.7229 -3.2306 -0.0041 37 1 4.6132 -5.4578 -0.0048 38 1 8.4198 -4.4397 -0.0073 39 1 10.6983 -5.5493 0.4236 40 1 10.7680 -7.3212 0.5779 41 1 14.0370 -6.4225 -0.8612 42 1 9.5488 -9.3554 -0.0113 43 1 7.7935 -11.0691 -0.0027 44 1 5.4193 -10.4257 -0.0112 45 1 4.7789 -8.0528 -0.0083 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095448159.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:27 Heat of formation + Delta-G solvation = 100.882362 kcal Electronic energy + Delta-G solvation = -28278.741611 eV Core-core repulsion = 24263.007854 eV Total energy + Delta-G solvation = -4015.733757 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 350.148 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.48465 -40.68551 -38.89109 -36.52677 -34.38094 -34.26554 -33.56911 -32.87374 -31.22761 -30.69477 -29.61595 -28.19076 -27.22945 -26.47233 -24.28432 -23.17512 -22.50055 -21.85448 -21.06122 -20.62130 -19.98066 -18.15126 -17.75041 -16.81955 -16.55435 -16.23697 -16.06803 -15.86946 -15.68568 -15.05647 -14.87449 -14.52076 -14.25703 -14.16264 -13.97588 -13.73250 -13.38934 -13.33185 -13.19115 -12.81530 -12.77581 -12.41069 -12.30644 -11.61734 -11.51910 -11.27106 -11.12314 -11.00977 -10.88784 -10.82499 -10.49669 -10.31280 -10.29900 -10.18465 -10.11979 -9.40179 -9.18445 -8.71641 -8.58963 -7.79246 -7.60332 -6.73210 -6.29234 -4.41046 1.06310 1.65965 1.69918 2.07506 2.26428 2.40264 3.00196 3.16943 3.25199 3.30771 3.57489 3.75317 4.21751 4.26431 4.29777 4.51888 4.54438 4.63568 4.98488 5.01934 5.02900 5.07747 5.22354 5.33257 5.36169 5.45376 5.49227 5.50547 5.74685 5.80135 5.90623 6.02061 6.15513 6.28432 6.34118 6.43375 6.53127 6.62546 6.77513 6.89298 6.91914 6.95113 7.06471 7.17394 7.28732 7.34763 7.43040 7.61058 7.69924 7.80410 7.97205 8.03298 8.66956 8.76590 9.27171 10.75071 Molecular weight = 350.15amu Principal moments of inertia in cm(-1) A = 0.010954 B = 0.002188 C = 0.001889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2555.535108 B =12793.183325 C =14817.385001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.015 3.985 3 C -0.018 4.018 4 N -0.588 5.588 5 H 0.443 0.557 6 C 0.611 3.389 7 N -0.668 5.668 8 C 0.541 3.459 9 O -0.611 6.611 10 C -0.235 4.235 11 C 0.047 3.953 12 C -0.214 4.214 13 C 0.122 3.878 14 N -0.439 5.439 15 C 0.230 3.770 16 C -0.542 4.542 17 H 0.066 0.934 18 C 0.066 3.934 19 N -0.890 5.890 20 Si 0.905 3.095 21 H -0.270 1.270 22 H -0.280 1.280 23 H -0.280 1.280 24 C 0.098 3.902 25 C -0.104 4.104 26 C -0.121 4.121 27 C -0.149 4.149 28 C -0.086 4.086 29 C -0.088 4.088 30 N -0.603 5.603 31 H 0.447 0.553 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.085 0.915 35 H 0.191 0.809 36 H 0.125 0.875 37 H 0.122 0.878 38 H 0.170 0.830 39 H 0.051 0.949 40 H 0.048 0.952 41 H 0.268 0.732 42 H 0.123 0.877 43 H 0.118 0.882 44 H 0.114 0.886 45 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.031 12.529 2.955 25.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.095 4.095 3 C -0.144 4.144 4 N -0.208 5.208 5 H 0.284 0.716 6 C 0.255 3.745 7 N -0.436 5.436 8 C 0.335 3.665 9 O -0.496 6.496 10 C -0.257 4.257 11 C 0.027 3.973 12 C -0.221 4.221 13 C -0.014 4.014 14 N -0.113 5.113 15 C 0.112 3.888 16 C -0.580 4.580 17 H 0.085 0.915 18 C -0.137 4.137 19 N -0.527 5.527 20 Si 0.732 3.268 21 H -0.195 1.195 22 H -0.206 1.206 23 H -0.206 1.206 24 C -0.009 4.009 25 C -0.124 4.124 26 C -0.140 4.140 27 C -0.168 4.168 28 C -0.105 4.105 29 C -0.092 4.092 30 N -0.236 5.236 31 H 0.300 0.700 32 H 0.097 0.903 33 H 0.092 0.908 34 H 0.104 0.896 35 H 0.208 0.792 36 H 0.143 0.857 37 H 0.139 0.861 38 H 0.187 0.813 39 H 0.069 0.931 40 H 0.066 0.934 41 H 0.077 0.923 42 H 0.141 0.859 43 H 0.136 0.864 44 H 0.132 0.868 45 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -21.251 12.342 3.004 24.758 hybrid contribution 0.377 -0.298 -0.970 1.083 sum -20.874 12.044 2.034 24.185 Atomic orbital electron populations 1.20336 0.86409 1.04047 1.03437 1.20603 0.95134 0.85772 1.08017 1.21632 0.81227 0.99633 1.11920 1.41918 1.08936 1.04185 1.65747 0.71567 1.20041 0.82090 0.85244 0.87092 1.69822 1.21851 1.06785 1.45143 1.19216 0.88559 0.85073 0.73676 1.90467 1.28117 1.78829 1.52166 1.22071 0.97475 0.92779 1.13394 1.21447 0.96198 0.92082 0.87610 1.18854 0.91822 0.90888 1.20528 1.22243 0.89110 0.92777 0.97282 1.44720 1.08889 1.03170 1.54531 1.19836 0.70033 0.99819 0.99071 1.21376 0.92264 1.52571 0.91799 0.91533 1.24945 0.96389 0.94274 0.98135 1.69928 1.02844 1.48753 1.31197 0.86315 0.78953 0.77918 0.83654 1.19459 1.20587 1.20614 1.18277 0.90071 0.88396 1.04149 1.20190 0.99940 0.89431 1.02834 1.20669 0.92449 0.98267 1.02615 1.20746 0.95835 0.95362 1.04887 1.20303 0.97728 0.91711 1.00758 1.19029 0.92401 0.92393 1.05408 1.44449 1.05071 1.11032 1.63071 0.70042 0.90273 0.90801 0.89592 0.79206 0.85746 0.86057 0.81323 0.93133 0.93442 0.92251 0.85915 0.86420 0.86750 0.86749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.29 10.41 36.00 0.37 0.09 16 2 C 0.01 0.10 7.16 -81.47 -0.58 -0.48 16 3 C -0.02 -0.09 11.81 -16.42 -0.19 -0.29 16 4 N -0.59 -4.50 6.20 -13.55 -0.08 -4.59 16 5 H 0.44 2.33 8.96 -40.82 -0.37 1.97 16 6 C 0.61 7.55 8.74 -321.06 -2.81 4.74 16 7 N -0.67 -10.51 10.52 -14.23 -0.15 -10.66 16 8 C 0.54 9.53 7.66 -13.30 -0.10 9.43 16 9 O -0.61 -11.11 13.58 4.83 0.07 -11.04 16 10 C -0.24 -4.08 9.64 -37.40 -0.36 -4.44 16 11 C 0.05 0.84 9.72 -37.32 -0.36 0.47 16 12 C -0.21 -4.10 6.24 -103.39 -0.65 -4.75 16 13 C 0.12 2.42 10.66 -16.43 -0.18 2.24 16 14 N -0.44 -9.68 2.73 -115.37 -0.32 -10.00 16 15 C 0.23 5.63 5.71 -5.20 -0.03 5.60 16 16 C -0.54 -14.50 9.39 -34.44 -0.32 -14.82 16 17 H 0.07 1.84 7.81 -52.49 -0.41 1.43 16 18 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 19 N -0.89 -24.65 13.29 55.43 0.74 -23.91 16 20 Si 0.90 20.91 29.54 -169.99 -5.02 15.89 16 21 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 22 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 23 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 24 C 0.10 2.08 6.79 -83.96 -0.57 1.51 16 25 C -0.10 -2.03 9.97 -39.42 -0.39 -2.42 16 26 C -0.12 -1.99 10.01 -39.56 -0.40 -2.39 16 27 C -0.15 -2.35 10.03 -39.56 -0.40 -2.75 16 28 C -0.09 -1.48 10.09 -39.37 -0.40 -1.88 16 29 C -0.09 -1.75 6.36 -104.93 -0.67 -2.41 16 30 N -0.60 -6.55 5.77 -9.83 -0.06 -6.61 16 31 H 0.45 5.48 6.26 -40.82 -0.26 5.23 16 32 H 0.08 0.22 8.14 -51.93 -0.42 -0.21 16 33 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.09 0.11 8.14 -51.93 -0.42 -0.31 16 35 H 0.19 0.19 8.06 -52.49 -0.42 -0.23 16 36 H 0.12 2.06 6.87 -52.49 -0.36 1.70 16 37 H 0.12 2.09 7.52 -52.49 -0.39 1.69 16 38 H 0.17 2.94 7.19 -52.48 -0.38 2.56 16 39 H 0.05 1.25 8.11 -51.93 -0.42 0.83 16 40 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 41 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 42 H 0.12 2.41 8.06 -52.49 -0.42 1.98 16 43 H 0.12 1.60 8.06 -52.49 -0.42 1.18 16 44 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 45 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 LS Contribution 392.68 15.07 5.92 5.92 Total: -1.00 -33.75 392.68 -12.56 -46.31 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: -5.53 Total: 9.57 kcal Atomic # 6 Polarization: -2.75 SS G_CDS: -8.12 Total: -10.87 kcal Atomic # 7 Polarization: -55.90 SS G_CDS: 0.13 Total: -55.77 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: 0.07 Total: -11.04 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -33.75 -12.56 -46.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095448159.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.192 kcal (2) G-P(sol) polarization free energy of solvation -33.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.309 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds