Wall clock time and date at job start Tue Mar 31 2020 05:30:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.47174 * 2 1 4 4 C 1.50707 * 109.47255 * 119.99919 * 2 1 3 5 5 H 1.07999 * 119.99749 * 118.89229 * 4 2 1 6 6 C 1.37871 * 120.00130 * 298.89000 * 4 2 1 7 7 N 1.31517 * 119.99721 * 2.81817 * 6 4 2 8 8 Si 1.86803 * 120.00088 * 182.81600 * 6 4 2 9 9 H 1.48497 * 109.46831 * 265.00649 * 8 6 4 10 10 H 1.48503 * 109.46805 * 25.00397 * 8 6 4 11 11 H 1.48497 * 109.47013 * 145.00361 * 8 6 4 12 12 S 1.81402 * 109.47234 * 240.00054 * 2 1 3 13 13 C 1.76203 * 102.99913 * 71.15024 * 12 2 1 14 14 C 1.38779 * 120.10275 * 2.37590 * 13 12 2 15 15 C 1.38203 * 119.98724 * 180.02562 * 14 13 12 16 16 C 1.38292 * 120.20067 * 0.02562 * 15 14 13 17 17 C 1.38251 * 120.20847 * 0.02562 * 16 15 14 18 18 C 1.38652 * 120.01052 * 359.68341 * 17 16 15 19 19 N 1.40141 * 120.10123 * 180.32026 * 18 17 16 20 20 C 1.34769 * 120.00174 * 332.55094 * 19 18 17 21 21 O 1.21296 * 120.00235 * 3.76575 * 20 19 18 22 22 C 1.50702 * 120.00190 * 183.77033 * 20 19 18 23 23 N 1.46897 * 109.47081 * 180.02562 * 22 20 19 24 24 C 1.47013 * 110.99662 * 293.63025 * 23 22 20 25 25 C 1.53108 * 109.25646 * 177.61052 * 24 23 22 26 26 O 1.43018 * 109.25754 * 56.85170 * 25 24 23 27 27 C 1.43021 * 113.73358 * 301.32978 * 26 25 24 28 28 C 1.47015 * 110.99894 * 169.99879 * 23 22 20 29 29 H 1.09008 * 109.46744 * 306.75693 * 1 2 3 30 30 H 1.08993 * 109.46992 * 66.75762 * 1 2 3 31 31 H 1.09000 * 109.47224 * 186.76293 * 1 2 3 32 32 H 0.97000 * 119.99562 * 180.02562 * 7 6 4 33 33 H 1.08001 * 120.00853 * 359.97438 * 14 13 12 34 34 H 1.08001 * 119.89511 * 180.02562 * 15 14 13 35 35 H 1.07992 * 119.89828 * 179.97438 * 16 15 14 36 36 H 1.08002 * 119.99343 * 179.97438 * 17 16 15 37 37 H 0.97008 * 119.99655 * 152.55339 * 19 18 17 38 38 H 1.09002 * 109.47058 * 300.00048 * 22 20 19 39 39 H 1.09000 * 109.47299 * 59.99504 * 22 20 19 40 40 H 1.08996 * 109.50891 * 297.54262 * 24 23 22 41 41 H 1.08995 * 109.50901 * 57.67987 * 24 23 22 42 42 H 1.08996 * 109.50485 * 296.91329 * 25 24 23 43 43 H 1.09006 * 109.54014 * 176.80710 * 25 24 23 44 44 H 1.08998 * 109.50617 * 298.73176 * 27 26 25 45 45 H 1.09003 * 109.53821 * 178.63377 * 27 26 25 46 46 H 1.09005 * 109.50869 * 302.32460 * 28 23 22 47 47 H 1.09005 * 109.50969 * 62.40962 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6384 -1.5988 1.1315 6 6 1.7183 -0.2262 2.4826 7 7 0.9348 0.8231 2.6043 8 14 2.4056 -1.0605 4.0061 9 1 1.4152 -2.0380 4.5245 10 1 3.6640 -1.7680 3.6579 11 1 2.6841 -0.0386 5.0470 12 16 2.1347 -0.8551 -1.4811 13 6 1.7438 0.2727 -2.7773 14 6 1.1620 1.4976 -2.4822 15 6 0.8559 2.3802 -3.5007 16 6 1.1272 2.0467 -4.8152 17 6 1.7057 0.8282 -5.1185 18 6 2.0219 -0.0613 -4.1030 19 7 2.6145 -1.2941 -4.4078 20 6 2.3929 -1.8705 -5.6057 21 8 1.7367 -1.2912 -6.4454 22 6 2.9602 -3.2349 -5.9019 23 7 2.5810 -3.6380 -7.2627 24 6 1.1286 -3.8403 -7.3667 25 6 0.7711 -4.2001 -8.8113 26 8 1.5090 -5.3603 -9.2049 27 6 2.9272 -5.1979 -9.1164 28 6 3.3065 -4.8483 -7.6750 29 1 -0.3633 0.6150 0.8234 30 1 -0.3633 0.4055 -0.9442 31 1 -0.3634 -1.0205 0.1210 32 1 0.7142 1.1640 3.4852 33 1 0.9477 1.7608 -1.4569 34 1 0.4036 3.3332 -3.2694 35 1 0.8856 2.7399 -5.6072 36 1 1.9156 0.5712 -6.1462 37 1 3.1841 -1.7326 -3.7564 38 1 4.0468 -3.2016 -5.8227 39 1 2.5657 -3.9558 -5.1858 40 1 0.8257 -4.6511 -6.7041 41 1 0.6121 -2.9239 -7.0814 42 1 1.0249 -3.3674 -9.4672 43 1 -0.2969 -4.4066 -8.8820 44 1 3.2437 -4.3943 -9.7813 45 1 3.4192 -6.1260 -9.4075 46 1 4.3798 -4.6677 -7.6147 47 1 3.0390 -5.6751 -7.0168 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095953616.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:20 Heat of formation + Delta-G solvation = -39.947006 kcal Electronic energy + Delta-G solvation = -28264.539962 eV Core-core repulsion = 24345.850586 eV Total energy + Delta-G solvation = -3918.689376 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 350.145 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.66884 -39.55811 -38.12280 -35.78268 -34.73453 -34.14373 -31.43794 -31.15747 -30.37423 -29.96585 -28.60611 -25.45322 -25.32778 -24.29615 -22.84545 -22.36009 -21.31064 -20.72906 -20.25415 -18.07864 -17.23630 -16.92024 -16.45030 -16.36593 -16.17116 -15.83358 -15.36327 -15.23912 -15.05834 -14.81045 -14.47844 -14.15640 -14.03208 -13.60955 -13.57153 -13.27992 -12.96001 -12.67363 -12.48082 -12.34201 -12.03282 -11.77213 -11.68191 -11.60178 -11.35859 -11.14091 -11.08860 -10.86826 -10.66119 -10.56095 -10.32423 -10.12693 -10.03197 -9.56519 -9.45890 -9.14870 -8.97367 -8.70778 -8.60732 -8.01976 -6.61855 -6.28498 -4.37631 1.49178 1.70335 2.36637 2.58452 2.87239 3.16920 3.24287 3.28139 3.49800 3.57009 3.66793 4.08992 4.23872 4.47952 4.57195 4.69361 4.82342 4.86332 4.94706 5.04084 5.06664 5.09238 5.25648 5.29955 5.34299 5.39131 5.47710 5.57676 5.64697 5.69872 5.82246 5.83535 6.21361 6.40462 6.51426 6.53006 6.56529 6.59687 6.68135 6.69704 6.73264 6.86088 6.87027 7.25433 7.30570 7.45878 7.54080 7.69677 7.92632 8.10628 8.61067 9.26940 10.77764 Molecular weight = 350.15amu Principal moments of inertia in cm(-1) A = 0.014095 B = 0.002471 C = 0.002198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1986.097443 B =11331.001336 C =12733.909023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.102 3.898 3 H 0.052 0.948 4 C -0.513 4.513 5 H 0.067 0.933 6 C 0.071 3.929 7 N -0.885 5.885 8 Si 0.906 3.094 9 H -0.278 1.278 10 H -0.271 1.271 11 H -0.283 1.283 12 S -0.177 6.177 13 C -0.090 4.090 14 C -0.117 4.117 15 C -0.118 4.118 16 C -0.125 4.125 17 C -0.118 4.118 18 C 0.146 3.854 19 N -0.660 5.660 20 C 0.515 3.485 21 O -0.509 6.509 22 C 0.036 3.964 23 N -0.519 5.519 24 C 0.011 3.989 25 C 0.067 3.933 26 O -0.389 6.389 27 C 0.065 3.935 28 C 0.017 3.983 29 H 0.091 0.909 30 H 0.020 0.980 31 H 0.041 0.959 32 H 0.266 0.734 33 H 0.138 0.862 34 H 0.120 0.880 35 H 0.120 0.880 36 H 0.148 0.852 37 H 0.413 0.587 38 H 0.109 0.891 39 H 0.071 0.929 40 H 0.040 0.960 41 H 0.107 0.893 42 H 0.062 0.938 43 H 0.098 0.902 44 H 0.060 0.940 45 H 0.098 0.902 46 H 0.088 0.912 47 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.289 -6.407 -18.669 20.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.025 4.025 3 H 0.070 0.930 4 C -0.552 4.552 5 H 0.085 0.915 6 C -0.133 4.133 7 N -0.522 5.522 8 Si 0.733 3.267 9 H -0.204 1.204 10 H -0.196 1.196 11 H -0.209 1.209 12 S 0.070 5.930 13 C -0.206 4.206 14 C -0.141 4.141 15 C -0.139 4.139 16 C -0.146 4.146 17 C -0.139 4.139 18 C 0.046 3.954 19 N -0.304 5.304 20 C 0.302 3.698 21 O -0.384 6.384 22 C -0.095 4.095 23 N -0.244 5.244 24 C -0.117 4.117 25 C -0.010 4.010 26 O -0.307 6.307 27 C -0.012 4.012 28 C -0.111 4.111 29 H 0.110 0.890 30 H 0.039 0.961 31 H 0.060 0.940 32 H 0.076 0.924 33 H 0.156 0.844 34 H 0.138 0.862 35 H 0.138 0.862 36 H 0.165 0.835 37 H 0.250 0.750 38 H 0.127 0.873 39 H 0.089 0.911 40 H 0.058 0.942 41 H 0.125 0.875 42 H 0.080 0.920 43 H 0.116 0.884 44 H 0.079 0.921 45 H 0.116 0.884 46 H 0.106 0.894 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 3.359 -6.894 -19.475 20.931 hybrid contribution -0.083 0.294 2.133 2.155 sum 3.275 -6.601 -17.342 18.842 Atomic orbital electron populations 1.22126 0.96169 1.01631 1.00036 1.21098 0.95653 0.97248 0.88548 0.93035 1.20619 1.33587 1.12447 0.88596 0.91502 1.24890 0.94579 0.94965 0.98873 1.69875 1.34778 1.23368 1.24187 0.86336 0.79473 0.79113 0.81752 1.20430 1.19551 1.20861 1.84976 1.76236 1.29836 1.01914 1.21775 1.03603 0.99527 0.95660 1.21316 0.99495 0.92714 1.00616 1.21047 1.00768 0.99361 0.92700 1.20963 1.00896 0.96525 0.96252 1.21362 1.00348 0.92582 0.99621 1.17225 1.00340 0.86065 0.91800 1.43474 1.49105 1.20437 1.17423 1.20524 0.80383 0.87536 0.81361 1.90602 1.38592 1.63619 1.45559 1.21969 1.02369 0.94072 0.91095 1.61872 1.06705 1.33156 1.22669 1.23005 0.88259 1.02546 0.97906 1.22655 0.96309 0.88178 0.93858 1.87976 1.17625 1.37557 1.87557 1.22630 0.81859 1.01916 0.94766 1.22841 0.99528 0.91087 0.97678 0.89007 0.96124 0.93973 0.92384 0.84401 0.86229 0.86238 0.83478 0.75013 0.87297 0.91068 0.94214 0.87519 0.91982 0.88401 0.92149 0.88398 0.89376 0.93641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.22 8.33 37.16 0.31 -2.91 16 2 C 0.10 2.41 1.98 -27.88 -0.06 2.36 16 3 H 0.05 1.31 6.94 -51.92 -0.36 0.95 16 4 C -0.51 -13.31 8.56 -34.44 -0.29 -13.60 16 5 H 0.07 1.74 7.71 -52.49 -0.40 1.34 16 6 C 0.07 1.85 5.33 -17.82 -0.09 1.76 16 7 N -0.88 -23.55 11.37 55.43 0.63 -22.92 16 8 Si 0.91 20.18 29.54 -169.99 -5.02 15.16 16 9 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 10 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 11 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 12 S -0.18 -3.58 19.98 -107.50 -2.15 -5.73 16 13 C -0.09 -1.68 6.03 -38.91 -0.23 -1.92 16 14 C -0.12 -2.13 8.07 -39.39 -0.32 -2.45 16 15 C -0.12 -1.84 10.04 -39.57 -0.40 -2.24 16 16 C -0.12 -1.84 10.04 -39.56 -0.40 -2.24 16 17 C -0.12 -1.88 8.77 -39.42 -0.35 -2.23 16 18 C 0.15 2.46 6.44 -83.43 -0.54 1.92 16 19 N -0.66 -9.31 5.13 -9.71 -0.05 -9.36 16 20 C 0.52 6.78 7.42 -10.99 -0.08 6.70 16 21 O -0.51 -7.93 11.37 5.54 0.06 -7.87 16 22 C 0.04 0.35 5.45 -4.98 -0.03 0.32 16 23 N -0.52 -5.33 4.46 -235.75 -1.05 -6.39 16 24 C 0.01 0.11 5.29 -3.71 -0.02 0.09 16 25 C 0.07 0.65 7.01 37.21 0.26 0.91 16 26 O -0.39 -4.08 10.83 -35.23 -0.38 -4.46 16 27 C 0.07 0.52 7.01 37.21 0.26 0.78 16 28 C 0.02 0.13 5.64 -3.71 -0.02 0.11 16 29 H 0.09 2.27 6.27 -51.92 -0.33 1.95 16 30 H 0.02 0.42 6.05 -51.93 -0.31 0.11 16 31 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 33 H 0.14 2.69 4.84 -52.49 -0.25 2.44 16 34 H 0.12 1.57 8.06 -52.49 -0.42 1.15 16 35 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 36 H 0.15 2.35 5.67 -52.49 -0.30 2.05 16 37 H 0.41 5.29 7.73 -40.82 -0.32 4.97 16 38 H 0.11 0.81 8.04 -51.93 -0.42 0.40 16 39 H 0.07 0.64 8.12 -51.93 -0.42 0.21 16 40 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 41 H 0.11 1.35 5.88 -51.93 -0.31 1.05 16 42 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 46 H 0.09 0.55 8.09 -51.93 -0.42 0.13 16 47 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 LS Contribution 382.14 15.07 5.76 5.76 Total: -1.00 -29.22 382.14 -10.97 -40.19 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: -6.78 Total: 8.25 kcal Atomic # 6 Polarization: -10.63 SS G_CDS: -1.99 Total: -12.62 kcal Atomic # 7 Polarization: -38.20 SS G_CDS: -0.47 Total: -38.67 kcal Atomic # 8 Polarization: -12.01 SS G_CDS: -0.32 Total: -12.33 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.16 kcal Atomic # 16 Polarization: -3.58 SS G_CDS: -2.15 Total: -5.73 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -29.22 -10.97 -40.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095953616.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.238 kcal (2) G-P(sol) polarization free energy of solvation -29.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds