Wall clock time and date at job start Tue Mar 31 2020 05:30:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08996 * 109.47023 * 2 1 4 4 C 1.50696 * 109.46863 * 240.00130 * 2 1 3 5 5 H 1.07996 * 120.00491 * 245.00957 * 4 2 1 6 6 C 1.37885 * 120.00043 * 65.01722 * 4 2 1 7 7 N 1.31514 * 119.99905 * 5.54500 * 6 4 2 8 8 Si 1.86801 * 119.99969 * 185.55136 * 6 4 2 9 9 H 1.48499 * 109.47079 * 94.99331 * 8 6 4 10 10 H 1.48494 * 109.46912 * 214.99549 * 8 6 4 11 11 H 1.48501 * 109.46980 * 334.99403 * 8 6 4 12 12 S 1.81398 * 109.46982 * 120.00595 * 2 1 3 13 13 C 1.76208 * 102.99623 * 291.39079 * 12 2 1 14 14 C 1.38781 * 120.10580 * 354.65741 * 13 12 2 15 15 C 1.38200 * 119.98873 * 180.02562 * 14 13 12 16 16 C 1.38297 * 120.19637 * 0.02562 * 15 14 13 17 17 C 1.38249 * 120.21553 * 359.97438 * 16 15 14 18 18 C 1.38647 * 120.00566 * 0.02562 * 17 16 15 19 19 N 1.40136 * 120.10097 * 179.97438 * 18 17 16 20 20 C 1.34780 * 119.99904 * 333.17941 * 19 18 17 21 21 O 1.21295 * 119.99754 * 4.27508 * 20 19 18 22 22 C 1.50701 * 119.99916 * 184.26669 * 20 19 18 23 23 N 1.46902 * 109.46806 * 180.02562 * 22 20 19 24 24 C 1.47014 * 111.00396 * 293.63782 * 23 22 20 25 25 C 1.53093 * 109.25932 * 177.60663 * 24 23 22 26 26 O 1.43020 * 109.25771 * 56.84960 * 25 24 23 27 27 C 1.43011 * 113.73777 * 301.32771 * 26 25 24 28 28 C 1.47015 * 110.99893 * 170.00296 * 23 22 20 29 29 H 1.08993 * 109.46990 * 294.36056 * 1 2 3 30 30 H 1.09001 * 109.46750 * 54.35605 * 1 2 3 31 31 H 1.08998 * 109.46953 * 174.35858 * 1 2 3 32 32 H 0.97002 * 119.99954 * 179.97438 * 7 6 4 33 33 H 1.08001 * 120.00762 * 0.04479 * 14 13 12 34 34 H 1.08001 * 119.89849 * 179.97438 * 15 14 13 35 35 H 1.08006 * 119.89447 * 180.02562 * 16 15 14 36 36 H 1.07994 * 119.99672 * 179.72844 * 17 16 15 37 37 H 0.97001 * 120.00776 * 153.17771 * 19 18 17 38 38 H 1.08994 * 109.47534 * 300.00304 * 22 20 19 39 39 H 1.09004 * 109.46851 * 60.00801 * 22 20 19 40 40 H 1.08998 * 109.50423 * 297.54542 * 24 23 22 41 41 H 1.09005 * 109.50374 * 57.67215 * 24 23 22 42 42 H 1.09003 * 109.50979 * 296.91557 * 25 24 23 43 43 H 1.08998 * 109.54707 * 176.80613 * 25 24 23 44 44 H 1.08994 * 109.50909 * 298.73418 * 27 26 25 45 45 H 1.09000 * 109.54132 * 178.62662 * 27 26 25 46 46 H 1.09000 * 109.50961 * 302.32681 * 28 23 22 47 47 H 1.08992 * 109.50624 * 62.41506 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5848 -1.6332 -1.1336 6 6 1.7866 -0.1820 -2.4801 7 7 1.2106 0.9947 -2.5949 8 14 2.2718 -1.1377 -4.0101 9 1 1.1048 -1.9152 -4.4989 10 1 2.7132 -0.1911 -5.0657 11 1 3.3830 -2.0665 -3.6819 12 16 2.1347 -0.8553 1.4810 13 6 1.6764 0.2379 2.7848 14 6 1.1128 1.4720 2.4927 15 6 0.7547 2.3278 3.5171 16 6 0.9567 1.9585 4.8345 17 6 1.5175 0.7311 5.1349 18 6 1.8799 -0.1341 4.1140 19 7 2.4490 -1.3785 4.4162 20 6 3.1332 -1.5454 5.5654 21 8 3.1907 -0.6427 6.3735 22 6 3.8264 -2.8537 5.8464 23 7 4.4951 -2.7828 7.1525 24 6 5.5962 -1.8090 7.1286 25 6 6.2251 -1.7236 8.5218 26 8 6.6619 -3.0251 8.9228 27 6 5.6147 -3.9984 8.9577 28 6 4.9796 -4.1069 7.5689 29 1 -0.3633 0.4239 0.9361 30 1 -0.3633 0.5989 -0.8352 31 1 -0.3633 -1.0227 -0.1010 32 1 1.0381 1.3665 -3.4740 33 1 0.9537 1.7636 1.4650 34 1 0.3166 3.2880 3.2882 35 1 0.6746 2.6309 5.6313 36 1 1.6777 0.4482 6.1648 37 1 2.3507 -2.1199 3.7984 38 1 3.0921 -3.6590 5.8578 39 1 4.5660 -3.0472 5.0693 40 1 6.3492 -2.1288 6.4083 41 1 5.2105 -0.8304 6.8428 42 1 5.4865 -1.3526 9.2325 43 1 7.0780 -1.0454 8.4960 44 1 4.8584 -3.6936 9.6810 45 1 6.0255 -4.9658 9.2466 46 1 4.1438 -4.8057 7.6045 47 1 5.7221 -4.4636 6.8553 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095953617.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:25 Heat of formation + Delta-G solvation = -40.760406 kcal Electronic energy + Delta-G solvation = -28237.432769 eV Core-core repulsion = 24318.708121 eV Total energy + Delta-G solvation = -3918.724648 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 350.145 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.67498 -39.56096 -38.12410 -35.78470 -34.73423 -34.11976 -31.44005 -31.19959 -30.37648 -30.00481 -28.60575 -25.43596 -25.32331 -24.29770 -22.85559 -22.35952 -21.35062 -20.73234 -20.25784 -18.07659 -17.23722 -16.91752 -16.45537 -16.36656 -16.18532 -15.83244 -15.36486 -15.25874 -15.05777 -14.80217 -14.45411 -14.16332 -14.04075 -13.60888 -13.54820 -13.28939 -12.92658 -12.61826 -12.51062 -12.37301 -12.03938 -11.83030 -11.73075 -11.62678 -11.43336 -11.14200 -11.06467 -10.86439 -10.70295 -10.56131 -10.37865 -10.12847 -10.02844 -9.49734 -9.45959 -9.14908 -9.01652 -8.70804 -8.60430 -8.01272 -6.62500 -6.30919 -4.36968 1.49257 1.70355 2.36490 2.58310 2.86890 3.17158 3.24593 3.28067 3.49642 3.56911 3.66679 4.08990 4.24122 4.47806 4.57050 4.69285 4.82219 4.86216 4.94531 5.04138 5.06524 5.09139 5.25592 5.30224 5.34476 5.39053 5.47667 5.57804 5.64463 5.69764 5.82246 5.83734 6.21488 6.40240 6.47417 6.52649 6.56707 6.59770 6.62339 6.65798 6.72374 6.86127 6.87129 7.21943 7.30482 7.45527 7.46241 7.64758 7.89106 8.10272 8.61832 9.26783 10.78112 Molecular weight = 350.15amu Principal moments of inertia in cm(-1) A = 0.013891 B = 0.002473 C = 0.002184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2015.270439 B =11318.869939 C =12815.869409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.100 3.900 3 H 0.057 0.943 4 C -0.513 4.513 5 H 0.067 0.933 6 C 0.073 3.927 7 N -0.885 5.885 8 Si 0.905 3.095 9 H -0.278 1.278 10 H -0.284 1.284 11 H -0.271 1.271 12 S -0.176 6.176 13 C -0.091 4.091 14 C -0.116 4.116 15 C -0.119 4.119 16 C -0.124 4.124 17 C -0.120 4.120 18 C 0.147 3.853 19 N -0.660 5.660 20 C 0.515 3.485 21 O -0.509 6.509 22 C 0.036 3.964 23 N -0.519 5.519 24 C 0.010 3.990 25 C 0.067 3.933 26 O -0.389 6.389 27 C 0.065 3.935 28 C 0.017 3.983 29 H 0.024 0.976 30 H 0.079 0.921 31 H 0.043 0.957 32 H 0.267 0.733 33 H 0.138 0.862 34 H 0.120 0.880 35 H 0.120 0.880 36 H 0.150 0.850 37 H 0.413 0.587 38 H 0.109 0.891 39 H 0.071 0.929 40 H 0.040 0.960 41 H 0.107 0.893 42 H 0.062 0.938 43 H 0.098 0.902 44 H 0.060 0.940 45 H 0.098 0.902 46 H 0.088 0.912 47 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.751 -6.359 18.676 20.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.027 4.027 3 H 0.075 0.925 4 C -0.553 4.553 5 H 0.085 0.915 6 C -0.132 4.132 7 N -0.521 5.521 8 Si 0.732 3.268 9 H -0.204 1.204 10 H -0.209 1.209 11 H -0.196 1.196 12 S 0.071 5.929 13 C -0.207 4.207 14 C -0.140 4.140 15 C -0.140 4.140 16 C -0.146 4.146 17 C -0.141 4.141 18 C 0.046 3.954 19 N -0.304 5.304 20 C 0.302 3.698 21 O -0.384 6.384 22 C -0.095 4.095 23 N -0.244 5.244 24 C -0.117 4.117 25 C -0.010 4.010 26 O -0.307 6.307 27 C -0.012 4.012 28 C -0.111 4.111 29 H 0.043 0.957 30 H 0.098 0.902 31 H 0.062 0.938 32 H 0.076 0.924 33 H 0.156 0.844 34 H 0.138 0.862 35 H 0.138 0.862 36 H 0.167 0.833 37 H 0.250 0.750 38 H 0.127 0.873 39 H 0.089 0.911 40 H 0.058 0.942 41 H 0.125 0.875 42 H 0.080 0.920 43 H 0.116 0.884 44 H 0.079 0.921 45 H 0.116 0.884 46 H 0.106 0.894 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 4.245 -6.652 19.466 21.005 hybrid contribution -0.286 0.215 -2.157 2.186 sum 3.959 -6.437 17.309 18.887 Atomic orbital electron populations 1.22097 0.96531 1.01212 0.99965 1.21083 0.95221 0.97793 0.88633 0.92478 1.20592 1.36892 1.09090 0.88695 0.91506 1.24892 0.94681 0.94767 0.98889 1.69919 1.41889 1.15885 1.24453 0.86362 0.78940 0.79682 0.81849 1.20356 1.20927 1.19572 1.85003 1.74138 1.32348 1.01401 1.21776 1.04585 0.98946 0.95361 1.21309 0.99497 0.92630 1.00576 1.21048 1.00803 0.99440 0.92664 1.20972 1.00745 0.96605 0.96258 1.21416 0.98860 0.94200 0.99646 1.17237 0.99754 0.86816 0.91584 1.43485 1.52472 1.12401 1.22084 1.20528 0.78557 0.89772 0.80942 1.90591 1.59735 1.42578 1.45461 1.21970 0.99445 0.96171 0.91920 1.61872 1.28393 1.07483 1.26661 1.23005 0.91927 0.98780 0.98008 1.22653 0.99489 0.84560 0.94296 1.87974 1.34428 1.19569 1.88745 1.22629 0.90391 0.92864 0.95283 1.22840 0.99717 0.90719 0.97858 0.95684 0.90239 0.93776 0.92366 0.84419 0.86234 0.86244 0.83307 0.74981 0.87289 0.91063 0.94212 0.87517 0.91980 0.88400 0.92148 0.88397 0.89374 0.93640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.09 8.43 37.16 0.31 -2.77 16 2 C 0.10 2.36 1.86 -27.88 -0.05 2.31 16 3 H 0.06 1.47 6.95 -51.93 -0.36 1.11 16 4 C -0.51 -13.31 8.51 -34.44 -0.29 -13.60 16 5 H 0.07 1.74 7.72 -52.49 -0.41 1.34 16 6 C 0.07 1.89 5.28 -17.82 -0.09 1.79 16 7 N -0.88 -23.69 11.99 55.43 0.66 -23.03 16 8 Si 0.90 20.20 29.54 -169.99 -5.02 15.18 16 9 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 10 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 11 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 12 S -0.18 -3.56 19.98 -107.50 -2.15 -5.71 16 13 C -0.09 -1.70 5.99 -38.90 -0.23 -1.93 16 14 C -0.12 -2.10 7.97 -39.39 -0.31 -2.42 16 15 C -0.12 -1.85 10.04 -39.57 -0.40 -2.25 16 16 C -0.12 -1.83 10.04 -39.56 -0.40 -2.23 16 17 C -0.12 -1.91 8.79 -39.43 -0.35 -2.26 16 18 C 0.15 2.46 6.45 -83.43 -0.54 1.92 16 19 N -0.66 -9.29 5.15 -9.71 -0.05 -9.34 16 20 C 0.52 6.76 7.42 -10.98 -0.08 6.68 16 21 O -0.51 -7.90 11.33 5.54 0.06 -7.84 16 22 C 0.04 0.35 5.45 -4.97 -0.03 0.32 16 23 N -0.52 -5.32 4.46 -235.75 -1.05 -6.38 16 24 C 0.01 0.11 5.29 -3.71 -0.02 0.09 16 25 C 0.07 0.65 7.01 37.21 0.26 0.91 16 26 O -0.39 -4.07 10.83 -35.23 -0.38 -4.45 16 27 C 0.07 0.52 7.01 37.21 0.26 0.78 16 28 C 0.02 0.13 5.64 -3.71 -0.02 0.11 16 29 H 0.02 0.50 5.89 -51.93 -0.31 0.19 16 30 H 0.08 1.91 6.84 -51.93 -0.36 1.56 16 31 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 33 H 0.14 2.69 4.91 -52.49 -0.26 2.43 16 34 H 0.12 1.57 8.06 -52.49 -0.42 1.15 16 35 H 0.12 1.43 8.06 -52.48 -0.42 1.01 16 36 H 0.15 2.37 5.59 -52.49 -0.29 2.08 16 37 H 0.41 5.28 7.71 -40.82 -0.31 4.97 16 38 H 0.11 0.81 8.04 -51.93 -0.42 0.39 16 39 H 0.07 0.64 8.12 -51.93 -0.42 0.21 16 40 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 41 H 0.11 1.35 5.88 -51.93 -0.31 1.04 16 42 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 43 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 44 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 46 H 0.09 0.55 8.09 -51.93 -0.42 0.13 16 47 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 LS Contribution 382.92 15.07 5.77 5.77 Total: -1.00 -29.30 382.92 -10.93 -40.23 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: -6.80 Total: 8.09 kcal Atomic # 6 Polarization: -10.55 SS G_CDS: -1.98 Total: -12.53 kcal Atomic # 7 Polarization: -38.30 SS G_CDS: -0.44 Total: -38.74 kcal Atomic # 8 Polarization: -11.97 SS G_CDS: -0.32 Total: -12.29 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Atomic # 16 Polarization: -3.56 SS G_CDS: -2.15 Total: -5.71 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -29.30 -10.93 -40.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095953617.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.534 kcal (2) G-P(sol) polarization free energy of solvation -29.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds