Wall clock time and date at job start Tue Mar 31 2020 05:13:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29319 * 1 3 3 Si 1.86803 * 120.00037 * 2 1 4 4 H 1.48493 * 109.47062 * 240.00237 * 3 2 1 5 5 H 1.48504 * 109.46781 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46959 * 119.99956 * 3 2 1 7 7 C 1.46792 * 120.00205 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99934 * 179.97438 * 7 2 1 9 9 N 1.33295 * 119.99836 * 0.02562 * 7 2 1 10 10 C 1.34772 * 120.00069 * 179.97438 * 9 7 2 11 11 O 1.21542 * 119.99964 * 0.02562 * 10 9 7 12 12 C 1.47195 * 120.00053 * 180.02562 * 10 9 7 13 13 C 1.39851 * 120.22660 * 0.02562 * 12 10 9 14 14 C 1.37680 * 119.92600 * 179.97438 * 13 12 10 15 15 N 1.48018 * 119.80863 * 180.02562 * 14 13 12 16 16 O 1.31699 * 119.99894 * 359.97438 * 15 14 13 17 17 O 1.31699 * 119.99877 * 180.02562 * 15 14 13 18 18 C 1.38701 * 120.38429 * 359.97438 * 14 13 12 19 19 C 1.37892 * 120.46078 * 359.76279 * 18 14 13 20 20 C 1.39062 * 120.06614 * 0.51509 * 19 18 14 21 21 S 1.76191 * 120.19471 * 179.73883 * 20 19 18 22 22 C 1.81009 * 99.99901 * 353.71369 * 21 20 19 23 23 C 1.53001 * 109.46971 * 169.48137 * 22 21 20 24 24 C 1.52995 * 109.47310 * 179.97438 * 23 22 21 25 25 C 1.52999 * 109.47366 * 300.00487 * 24 23 22 26 26 C 1.53001 * 109.47378 * 59.99120 * 25 24 23 27 27 C 1.52995 * 109.47591 * 300.00742 * 26 25 24 28 28 H 0.96994 * 120.00108 * 0.02562 * 1 2 3 29 29 H 0.97002 * 119.99840 * 359.97438 * 9 7 2 30 30 H 1.08009 * 120.03902 * 359.96419 * 13 12 10 31 31 H 1.08006 * 119.76922 * 180.02562 * 18 14 13 32 32 H 1.08001 * 119.96566 * 180.25562 * 19 18 14 33 33 H 1.08996 * 109.46790 * 49.48302 * 22 21 20 34 34 H 1.09003 * 109.47266 * 59.99752 * 23 22 21 35 35 H 1.08998 * 109.47484 * 299.99771 * 23 22 21 36 36 H 1.08993 * 109.47623 * 179.97438 * 24 23 22 37 37 H 1.09003 * 109.46929 * 59.99827 * 24 23 22 38 38 H 1.08997 * 109.47653 * 179.97438 * 25 24 23 39 39 H 1.09001 * 109.47165 * 300.00003 * 25 24 23 40 40 H 1.09003 * 109.46911 * 60.00663 * 26 25 24 41 41 H 1.08997 * 109.47589 * 179.97438 * 26 25 24 42 42 H 1.09003 * 109.46929 * 299.99910 * 27 26 25 43 43 H 1.08993 * 109.47623 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2932 0.0000 0.0000 3 14 2.2272 1.6178 0.0000 4 1 3.0809 1.6964 -1.2125 5 1 1.2621 2.7465 0.0006 6 1 3.0809 1.6964 1.2125 7 6 2.0272 -1.2712 0.0006 8 1 3.1071 -1.2712 0.0002 9 7 1.3607 -2.4256 0.0006 10 6 2.0346 -3.5928 0.0006 11 8 3.2500 -3.5928 0.0010 12 6 1.2986 -4.8675 0.0000 13 6 -0.0999 -4.8731 -0.0011 14 6 -0.7820 -6.0690 -0.0021 15 7 -2.2622 -6.0718 -0.0039 16 8 -2.9229 -4.9325 -0.0039 17 8 -2.9185 -7.2136 -0.0044 18 6 -0.0903 -7.2712 -0.0027 19 6 1.2886 -7.2843 -0.0071 20 6 1.9967 -6.0875 -0.0002 21 16 3.7586 -6.1003 0.0011 22 6 4.0598 -7.8754 0.1872 23 6 5.5432 -8.1683 -0.0469 24 6 5.7980 -9.6686 0.1110 25 6 5.4086 -10.1061 1.5245 26 6 3.9252 -9.8132 1.7586 27 6 3.6704 -8.3129 1.6007 28 1 -0.4850 0.8400 -0.0004 29 1 0.3907 -2.4256 0.0006 30 1 -0.6443 -3.9402 -0.0009 31 1 -0.6354 -8.2036 -0.0039 32 1 1.8191 -8.2250 -0.0116 33 1 3.4619 -8.4236 -0.5408 34 1 6.1411 -7.6200 0.6812 35 1 5.8207 -7.8563 -1.0537 36 1 6.8546 -9.8773 -0.0562 37 1 5.2000 -10.2172 -0.6167 38 1 5.5897 -11.1750 1.6368 39 1 6.0064 -9.5575 2.2523 40 1 3.3273 -10.3618 1.0308 41 1 3.6477 -10.1253 2.7654 42 1 4.2684 -7.7643 2.3285 43 1 2.6137 -8.1043 1.7670 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095991887.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:01 Heat of formation + Delta-G solvation = 2.157547 kcal Electronic energy + Delta-G solvation = -28173.706485 eV Core-core repulsion = 24121.009805 eV Total energy + Delta-G solvation = -4052.696680 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 350.113 amu Computer time = 3.35 seconds Orbital eigenvalues (eV) -40.07193 -38.60875 -38.52258 -37.35560 -34.45090 -34.15989 -32.41546 -31.95264 -31.32065 -30.97549 -30.53350 -26.54637 -25.47086 -23.71189 -22.83115 -22.62690 -22.19681 -20.32997 -19.77518 -18.92625 -17.99603 -17.79535 -17.45471 -16.18342 -15.94527 -15.72247 -15.30438 -15.09735 -14.99277 -14.54328 -14.51624 -14.11172 -14.01781 -14.00103 -13.31543 -13.02143 -12.85481 -12.67457 -12.36902 -12.19188 -12.01327 -11.83101 -11.58819 -11.38948 -11.33778 -11.08294 -10.92668 -10.81351 -10.79588 -10.67272 -10.50966 -10.44152 -10.36238 -10.08588 -9.95089 -9.87060 -9.15190 -8.67826 -8.31458 -7.31323 -7.09646 -3.94381 -0.48140 0.83160 1.21042 1.37354 1.72366 2.54839 2.85936 2.99152 3.01207 3.11959 3.77070 4.00978 4.40243 4.41515 4.43811 4.50196 4.70840 4.73364 4.88967 4.90085 4.97590 5.00917 5.12206 5.19585 5.20582 5.29134 5.36134 5.45187 5.54655 5.58417 5.75577 5.78476 5.82498 5.85078 5.87298 5.93424 5.98228 6.02213 6.05169 6.17482 6.20503 6.48071 6.77354 7.03990 7.56182 8.06038 8.71981 9.05559 9.75941 10.02950 Molecular weight = 350.11amu Principal moments of inertia in cm(-1) A = 0.008643 B = 0.003740 C = 0.002678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3238.689117 B = 7485.483556 C =10454.253494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C 0.036 3.964 3 Si 0.943 3.057 4 H -0.264 1.264 5 H -0.278 1.278 6 H -0.264 1.264 7 C -0.315 4.315 8 H 0.122 0.878 9 N -0.495 5.495 10 C 0.410 3.590 11 O -0.581 6.581 12 C -0.077 4.077 13 C -0.035 4.035 14 C -0.016 4.016 15 N -0.008 5.008 16 O -0.177 6.177 17 O -0.195 6.195 18 C -0.049 4.049 19 C -0.143 4.143 20 C -0.030 4.030 21 S 0.078 5.922 22 C -0.159 4.159 23 C -0.095 4.095 24 C -0.114 4.114 25 C -0.120 4.120 26 C -0.117 4.117 27 C -0.116 4.116 28 H 0.293 0.707 29 H 0.391 0.609 30 H 0.156 0.844 31 H 0.150 0.850 32 H 0.150 0.850 33 H 0.089 0.911 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.065 0.935 37 H 0.062 0.938 38 H 0.060 0.940 39 H 0.063 0.937 40 H 0.060 0.940 41 H 0.063 0.937 42 H 0.075 0.925 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.555 -15.325 1.183 16.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C -0.180 4.180 3 Si 0.767 3.233 4 H -0.188 1.188 5 H -0.203 1.203 6 H -0.188 1.188 7 C -0.447 4.447 8 H 0.139 0.861 9 N -0.122 5.122 10 C 0.203 3.797 11 O -0.473 6.473 12 C -0.089 4.089 13 C -0.060 4.060 14 C -0.106 4.106 15 N 0.467 4.533 16 O -0.370 6.370 17 O -0.384 6.384 18 C -0.072 4.072 19 C -0.169 4.169 20 C -0.148 4.148 21 S 0.332 5.668 22 C -0.287 4.287 23 C -0.134 4.134 24 C -0.153 4.153 25 C -0.158 4.158 26 C -0.156 4.156 27 C -0.155 4.155 28 H 0.105 0.895 29 H 0.226 0.774 30 H 0.173 0.827 31 H 0.168 0.832 32 H 0.167 0.833 33 H 0.107 0.893 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.082 0.918 40 H 0.079 0.921 41 H 0.082 0.918 42 H 0.093 0.907 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 8.817 -14.173 1.073 16.726 hybrid contribution -2.047 -0.238 0.069 2.062 sum 6.770 -14.411 1.141 15.963 Atomic orbital electron populations 1.68635 1.08033 1.31258 1.37903 1.27140 0.95112 1.00915 0.94807 0.85711 0.79247 0.78173 0.80181 1.18827 1.20276 1.18826 1.20914 0.94094 0.81553 1.48111 0.86068 1.40972 1.09634 1.05275 1.56304 1.16931 0.87583 0.82342 0.92848 1.90480 1.12009 1.83675 1.61097 1.19953 0.91094 0.94481 1.03373 1.21168 0.93629 0.97316 0.93851 1.20097 0.76063 0.96705 1.17754 1.50476 1.04780 1.02484 0.95546 1.96297 1.69937 1.15039 1.55741 1.96217 1.70422 1.15129 1.56645 1.20780 0.94024 0.96581 0.95811 1.21120 0.92814 0.97524 1.05474 1.22613 1.00622 0.94738 0.96859 1.87608 0.94450 0.99813 1.84913 1.24204 1.01155 1.02715 1.00647 1.21247 0.92947 0.96507 1.02670 1.21526 1.01168 0.95417 0.97166 1.21546 0.96410 1.00697 0.97119 1.21562 0.96525 0.95966 1.01575 1.21896 1.02116 0.96213 0.95271 0.89484 0.77385 0.82679 0.83228 0.83262 0.89285 0.91027 0.91051 0.91677 0.91957 0.92129 0.91833 0.92088 0.91800 0.90653 0.91326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 50. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -19.68 13.09 56.00 0.73 -18.95 16 2 C 0.04 0.84 5.70 -15.15 -0.09 0.75 16 3 Si 0.94 18.24 29.65 -169.99 -5.04 13.20 16 4 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 5 H -0.28 -5.20 7.11 56.52 0.40 -4.80 16 6 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 7 C -0.32 -7.91 9.92 -13.46 -0.13 -8.05 16 8 H 0.12 3.17 7.19 -52.49 -0.38 2.80 16 9 N -0.49 -11.76 5.12 -10.76 -0.06 -11.82 16 10 C 0.41 9.41 7.67 -12.62 -0.10 9.32 16 11 O -0.58 -14.57 13.29 5.33 0.07 -14.50 16 12 C -0.08 -1.48 5.89 -104.78 -0.62 -2.10 16 13 C -0.04 -0.63 9.06 -39.18 -0.35 -0.99 16 14 C -0.02 -0.26 6.88 -79.98 -0.55 -0.81 16 15 N -0.01 -0.14 4.98 33.95 0.17 0.03 16 16 O -0.18 -3.50 19.13 -31.57 -0.60 -4.11 16 17 O -0.19 -3.50 19.13 -31.57 -0.60 -4.10 16 18 C -0.05 -0.68 9.56 -39.54 -0.38 -1.05 16 19 C -0.14 -1.89 7.75 -39.40 -0.31 -2.20 16 20 C -0.03 -0.50 6.00 -38.40 -0.23 -0.73 16 21 S 0.08 1.24 18.38 -107.50 -1.98 -0.74 16 22 C -0.16 -1.74 1.83 -26.73 -0.05 -1.79 16 23 C -0.09 -0.91 5.21 -26.73 -0.14 -1.05 16 24 C -0.11 -0.87 5.92 -26.73 -0.16 -1.03 16 25 C -0.12 -0.90 5.92 -26.73 -0.16 -1.06 16 26 C -0.12 -0.94 5.92 -26.73 -0.16 -1.10 16 27 C -0.12 -1.17 4.66 -26.73 -0.12 -1.30 16 28 H 0.29 6.43 8.26 -40.82 -0.34 6.10 16 29 H 0.39 8.92 6.01 -40.82 -0.25 8.67 16 30 H 0.16 2.83 5.90 -52.48 -0.31 2.52 16 31 H 0.15 1.72 7.56 -52.48 -0.40 1.32 16 32 H 0.15 1.54 4.64 -52.49 -0.24 1.30 16 33 H 0.09 0.90 6.51 -51.92 -0.34 0.56 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 39 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 43 H 0.07 0.73 5.91 -51.93 -0.31 0.43 16 LS Contribution 367.21 15.07 5.53 5.53 Total: -1.00 -27.49 367.21 -10.47 -37.96 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: -5.15 Total: 10.66 kcal Atomic # 6 Polarization: -9.63 SS G_CDS: -3.54 Total: -13.17 kcal Atomic # 7 Polarization: -31.59 SS G_CDS: 0.85 Total: -30.74 kcal Atomic # 8 Polarization: -21.57 SS G_CDS: -1.14 Total: -22.71 kcal Atomic # 14 Polarization: 18.24 SS G_CDS: -5.04 Total: 13.20 kcal Atomic # 16 Polarization: 1.24 SS G_CDS: -1.98 Total: -0.74 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -27.49 -10.47 -37.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095991887.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.118 kcal (2) G-P(sol) polarization free energy of solvation -27.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.35 seconds