Wall clock time and date at job start Tue Mar 31 2020 06:24:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21248 * 120.00087 * 2 1 4 4 C 1.47189 * 119.99894 * 180.02562 * 2 1 3 5 5 C 1.39891 * 120.13501 * 0.02562 * 4 2 1 6 6 C 1.37908 * 119.97343 * 179.97438 * 5 4 2 7 7 C 1.38290 * 120.26021 * 359.74402 * 6 5 4 8 8 S 1.76195 * 119.86752 * 180.25315 * 7 6 5 9 9 C 1.81402 * 104.44905 * 115.25680 * 8 7 6 10 10 O 1.42098 * 104.28094 * 231.33322 * 8 7 6 11 11 O 1.42105 * 104.27752 * 359.18964 * 8 7 6 12 12 C 1.39025 * 120.27228 * 0.51724 * 7 6 5 13 13 N 1.39718 * 119.98943 * 179.75939 * 12 7 6 14 14 C 1.46854 * 110.99573 * 119.72474 * 13 12 7 15 15 C 1.53037 * 109.51886 * 185.84273 * 14 13 12 16 16 C 1.53126 * 109.27801 * 300.81620 * 15 14 13 17 17 C 1.50698 * 109.52311 * 177.56193 * 16 15 14 18 18 H 1.07998 * 119.99689 * 0.02562 * 17 16 15 19 19 C 1.37876 * 119.99713 * 179.97438 * 17 16 15 20 20 N 1.31517 * 120.00304 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99718 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47333 * 0.02562 * 21 19 17 23 23 H 1.48510 * 109.46692 * 120.00480 * 21 19 17 24 24 H 1.48496 * 109.47542 * 240.00356 * 21 19 17 25 25 C 1.53124 * 109.15878 * 57.65645 * 16 15 14 26 26 C 1.46844 * 111.00113 * 243.93101 * 13 12 7 27 27 C 1.38605 * 120.01757 * 359.48371 * 12 7 6 28 28 H 1.09001 * 109.46664 * 239.99713 * 1 2 3 29 29 H 1.08996 * 109.47153 * 359.97438 * 1 2 3 30 30 H 1.08999 * 109.47553 * 119.99711 * 1 2 3 31 31 H 1.07998 * 120.01004 * 0.02562 * 5 4 2 32 32 H 1.08004 * 119.87125 * 180.02562 * 6 5 4 33 33 H 1.09002 * 109.46752 * 60.00606 * 9 8 7 34 34 H 1.09000 * 109.47176 * 179.97438 * 9 8 7 35 35 H 1.08998 * 109.47497 * 300.00467 * 9 8 7 36 36 H 1.08994 * 109.46310 * 65.82499 * 14 13 12 37 37 H 1.09004 * 109.45830 * 305.85186 * 14 13 12 38 38 H 1.09000 * 109.50480 * 180.88135 * 15 14 13 39 39 H 1.08992 * 109.50737 * 60.75564 * 15 14 13 40 40 H 1.08999 * 109.51925 * 297.75795 * 16 15 14 41 41 H 0.96995 * 120.00213 * 179.97438 * 20 19 17 42 42 H 1.08999 * 109.50059 * 62.28737 * 25 16 15 43 43 H 1.08993 * 109.49981 * 182.40384 * 25 16 15 44 44 H 1.09002 * 109.46133 * 294.17983 * 26 13 12 45 45 H 1.09002 * 109.46211 * 54.14509 * 26 13 12 46 46 H 1.08002 * 120.12850 * 180.23290 * 27 12 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0500 0.0000 4 6 2.2430 -1.2747 -0.0006 5 6 1.5463 -2.4878 -0.0017 6 6 2.2392 -3.6802 -0.0027 7 6 3.6221 -3.6826 -0.0081 8 16 4.4969 -5.2121 -0.0161 9 6 5.3661 -5.2280 -1.6083 10 8 5.4219 -5.0925 1.0559 11 8 3.4756 -6.2000 0.0043 12 6 4.3251 -2.4832 -0.0016 13 7 5.7222 -2.4926 -0.0019 14 6 6.2527 -1.8097 -1.1889 15 6 7.7745 -1.9654 -1.2310 16 6 8.3797 -1.3634 0.0403 17 6 9.8728 -1.5670 0.0326 18 1 10.3442 -2.0746 -0.7960 19 6 10.6370 -1.1044 1.0828 20 7 10.0629 -0.4858 2.0914 21 14 12.4878 -1.3574 1.0735 22 1 12.8830 -2.0759 -0.1645 23 1 13.1679 -0.0380 1.1183 24 1 12.8838 -2.1589 2.2592 25 6 7.7746 -2.0588 1.2629 26 6 6.2528 -1.9005 1.2327 27 6 3.6403 -1.2781 -0.0005 28 1 -0.3633 -0.5139 0.8900 29 1 -0.3633 1.0276 0.0005 30 1 -0.3634 -0.5138 -0.8900 31 1 0.4664 -2.4905 -0.0025 32 1 1.6997 -4.6158 -0.0040 33 1 6.0404 -4.3733 -1.6626 34 1 5.9405 -6.1498 -1.6994 35 1 4.6401 -5.1701 -2.4192 36 1 5.9970 -0.7511 -1.1435 37 1 5.8176 -2.2502 -2.0860 38 1 8.1696 -1.4452 -2.1036 39 1 8.0306 -3.0231 -1.2902 40 1 8.1566 -0.2972 0.0802 41 1 10.6005 -0.1607 2.8304 42 1 8.0308 -3.1181 1.2429 43 1 8.1697 -1.6055 2.1720 44 1 5.9970 -0.8415 1.2667 45 1 5.8178 -2.4068 2.0944 46 1 4.1846 -0.3453 0.0008 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096007535.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:34 Heat of formation + Delta-G solvation = -71.676431 kcal Electronic energy + Delta-G solvation = -30062.072166 eV Core-core repulsion = 26044.288236 eV Total energy + Delta-G solvation = -4017.783929 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 351.134 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.61394 -39.26895 -37.56849 -36.81542 -35.72926 -34.22376 -32.27799 -31.60374 -30.37006 -30.11116 -29.27590 -28.84702 -25.69718 -24.39751 -23.14675 -22.21871 -21.50272 -20.01392 -19.00881 -18.61627 -17.88981 -16.79760 -16.46060 -16.37268 -15.97273 -15.61552 -15.34086 -15.31633 -14.59065 -14.51085 -14.49784 -14.28772 -13.67983 -13.54239 -13.12138 -12.98707 -12.88876 -12.84101 -12.56073 -12.55049 -12.46955 -12.25473 -11.90415 -11.80620 -11.77168 -11.53299 -11.02323 -10.98321 -10.85056 -10.71602 -10.53561 -10.32587 -10.17329 -10.08647 -9.54922 -9.51801 -9.13449 -8.92823 -8.76915 -8.31821 -8.30555 -5.98117 -4.03588 -0.02423 0.31472 1.03116 1.92819 2.93712 3.28760 3.31067 3.39495 3.42474 3.63981 3.88770 3.94451 4.30714 4.45081 4.50222 4.69539 4.76540 4.86521 4.90897 5.01106 5.08131 5.22844 5.27206 5.32691 5.42306 5.48657 5.53330 5.64517 5.78815 5.80616 5.83612 5.93352 5.96049 6.08740 6.15293 6.44934 6.48211 6.54622 6.70165 6.92189 7.00492 7.15632 7.32448 7.43634 7.52119 7.77490 8.02126 8.12458 8.45271 8.99768 9.61253 11.08300 Molecular weight = 351.13amu Principal moments of inertia in cm(-1) A = 0.011296 B = 0.003753 C = 0.003029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2478.158184 B = 7458.505469 C = 9240.972320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.388 3.612 3 O -0.445 6.445 4 C -0.115 4.115 5 C -0.108 4.108 6 C -0.034 4.034 7 C -0.619 4.619 8 S 2.506 3.494 9 C -0.645 4.645 10 O -0.907 6.907 11 O -0.957 6.957 12 C 0.189 3.811 13 N -0.519 5.519 14 C 0.053 3.947 15 C -0.108 4.108 16 C 0.046 3.954 17 C -0.511 4.511 18 H 0.055 0.945 19 C 0.062 3.938 20 N -0.890 5.890 21 Si 0.890 3.110 22 H -0.274 1.274 23 H -0.286 1.286 24 H -0.284 1.284 25 C -0.104 4.104 26 C 0.067 3.933 27 C -0.112 4.112 28 H 0.096 0.904 29 H 0.086 0.914 30 H 0.095 0.905 31 H 0.139 0.861 32 H 0.152 0.848 33 H 0.146 0.854 34 H 0.129 0.871 35 H 0.123 0.877 36 H 0.040 0.960 37 H 0.063 0.937 38 H 0.057 0.943 39 H 0.061 0.939 40 H 0.022 0.978 41 H 0.259 0.741 42 H 0.054 0.946 43 H 0.097 0.903 44 H 0.031 0.969 45 H 0.068 0.932 46 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.924 -5.804 -7.152 21.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C 0.265 3.735 3 O -0.320 6.320 4 C -0.117 4.117 5 C -0.127 4.127 6 C -0.053 4.053 7 C -0.705 4.705 8 S 2.684 3.316 9 C -0.796 4.796 10 O -0.904 6.904 11 O -0.954 6.954 12 C 0.093 3.907 13 N -0.242 5.242 14 C -0.073 4.073 15 C -0.146 4.146 16 C 0.028 3.972 17 C -0.549 4.549 18 H 0.074 0.926 19 C -0.139 4.139 20 N -0.529 5.529 21 Si 0.718 3.282 22 H -0.199 1.199 23 H -0.212 1.212 24 H -0.210 1.210 25 C -0.143 4.143 26 C -0.057 4.057 27 C -0.133 4.133 28 H 0.114 0.886 29 H 0.105 0.895 30 H 0.114 0.886 31 H 0.157 0.843 32 H 0.170 0.830 33 H 0.165 0.835 34 H 0.148 0.852 35 H 0.142 0.858 36 H 0.058 0.942 37 H 0.081 0.919 38 H 0.075 0.925 39 H 0.080 0.920 40 H 0.040 0.960 41 H 0.069 0.931 42 H 0.073 0.927 43 H 0.116 0.884 44 H 0.050 0.950 45 H 0.087 0.913 46 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -19.361 -6.223 -6.344 21.303 hybrid contribution 0.573 1.443 -0.451 1.616 sum -18.789 -4.780 -6.796 20.544 Atomic orbital electron populations 1.22251 0.93214 1.05386 1.04721 1.22666 0.91935 0.87528 0.71346 1.90584 1.72206 1.34164 1.35005 1.20738 0.94388 0.95088 1.01448 1.21461 1.00248 0.91238 0.99784 1.20915 0.91851 0.99391 0.93120 1.30835 1.05327 1.19355 1.15000 1.05047 0.75147 0.73470 0.77918 1.30193 1.14932 1.12785 1.21693 1.93646 1.63085 1.84933 1.48754 1.93534 1.57571 1.56931 1.87373 1.18579 0.90525 0.90848 0.90712 1.60036 1.00700 1.57641 1.05852 1.22402 0.98492 0.96339 0.90063 1.21744 0.90284 1.01589 1.00939 1.18725 0.94579 0.94864 0.89069 1.21182 0.91647 1.36916 1.05164 0.92629 1.24961 0.98353 0.95025 0.95605 1.69871 1.35119 1.38851 1.09076 0.86576 0.85930 0.77730 0.77962 1.19858 1.21209 1.21034 1.21718 0.88023 1.01045 1.03471 1.22399 0.99678 0.95592 0.88056 1.22193 0.93764 0.99650 0.97743 0.88575 0.89508 0.88609 0.84292 0.83040 0.83549 0.85201 0.85841 0.94188 0.91855 0.92455 0.92040 0.95950 0.93081 0.92713 0.88449 0.95026 0.91305 0.84105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.22 8.93 36.01 0.32 -0.90 16 2 C 0.39 4.24 7.23 -30.67 -0.22 4.02 16 3 O -0.45 -6.64 17.08 5.59 0.10 -6.54 16 4 C -0.11 -1.33 5.87 -105.09 -0.62 -1.94 16 5 C -0.11 -0.99 9.47 -39.08 -0.37 -1.36 16 6 C -0.03 -0.35 9.48 -39.68 -0.38 -0.73 16 7 C -0.62 -7.99 5.60 -39.27 -0.22 -8.21 16 8 S 2.51 32.60 5.35 -107.50 -0.57 32.03 16 9 C -0.65 -6.33 10.70 101.05 1.08 -5.25 16 10 O -0.91 -15.71 17.12 -57.54 -0.99 -16.70 16 11 O -0.96 -13.39 16.72 -57.54 -0.96 -14.35 16 12 C 0.19 2.77 4.62 -83.84 -0.39 2.38 16 13 N -0.52 -8.63 2.50 -171.19 -0.43 -9.06 16 14 C 0.05 0.85 4.29 -3.83 -0.02 0.83 16 15 C -0.11 -2.06 5.32 -26.65 -0.14 -2.20 16 16 C 0.05 1.10 2.16 -91.64 -0.20 0.90 16 17 C -0.51 -13.62 8.56 -34.44 -0.29 -13.91 16 18 H 0.06 1.46 7.74 -52.49 -0.41 1.06 16 19 C 0.06 1.68 5.31 -17.82 -0.09 1.59 16 20 N -0.89 -25.11 11.37 55.43 0.63 -24.48 16 21 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 22 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 23 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 24 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 25 C -0.10 -2.42 5.12 -26.65 -0.14 -2.56 16 26 C 0.07 1.31 5.17 -3.84 -0.02 1.30 16 27 C -0.11 -1.59 8.24 -38.89 -0.32 -1.92 16 28 H 0.10 0.42 8.09 -51.93 -0.42 0.00 16 29 H 0.09 0.53 8.12 -51.93 -0.42 0.11 16 30 H 0.10 0.38 8.08 -51.93 -0.42 -0.04 16 31 H 0.14 0.73 7.04 -52.49 -0.37 0.36 16 32 H 0.15 1.31 7.19 -52.48 -0.38 0.94 16 33 H 0.15 1.63 5.95 -51.92 -0.31 1.32 16 34 H 0.13 1.04 8.14 -51.92 -0.42 0.62 16 35 H 0.12 0.87 8.14 -51.93 -0.42 0.44 16 36 H 0.04 0.66 7.33 -51.93 -0.38 0.28 16 37 H 0.06 0.83 7.57 -51.93 -0.39 0.44 16 38 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 40 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 42 H 0.05 1.32 8.14 -51.93 -0.42 0.90 16 43 H 0.10 2.54 6.17 -51.93 -0.32 2.22 16 44 H 0.03 0.62 7.55 -51.93 -0.39 0.23 16 45 H 0.07 1.34 8.11 -51.93 -0.42 0.92 16 46 H 0.14 2.18 6.71 -52.49 -0.35 1.83 16 LS Contribution 379.87 15.07 5.72 5.72 Total: -1.00 -33.98 379.87 -10.19 -44.16 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: -6.65 Total: 1.09 kcal Atomic # 6 Polarization: -25.97 SS G_CDS: -2.01 Total: -27.98 kcal Atomic # 7 Polarization: -33.75 SS G_CDS: 0.20 Total: -33.54 kcal Atomic # 8 Polarization: -35.74 SS G_CDS: -1.85 Total: -37.59 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 16 Polarization: 32.60 SS G_CDS: -0.57 Total: 32.03 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.98 -10.19 -44.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096007535.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.512 kcal (2) G-P(sol) polarization free energy of solvation -33.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds