Wall clock time and date at job start Tue Mar 31 2020 06:26:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86792 * 120.00237 * 2 1 4 4 H 1.48504 * 109.47436 * 240.00366 * 3 2 1 5 5 H 1.48503 * 109.46938 * 0.02562 * 3 2 1 6 6 H 1.48493 * 109.47451 * 120.00074 * 3 2 1 7 7 C 1.37882 * 120.00021 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00170 * 179.97438 * 7 2 1 9 9 C 1.50708 * 119.99901 * 359.97438 * 7 2 1 10 10 C 1.52994 * 109.47052 * 179.97438 * 9 7 2 11 11 N 1.46497 * 109.47059 * 179.97438 * 10 9 7 12 12 C 1.34783 * 119.99740 * 179.97438 * 11 10 9 13 13 O 1.21629 * 120.00234 * 5.66724 * 12 11 10 14 14 C 1.47121 * 119.99503 * 185.66108 * 12 11 10 15 15 C 1.37760 * 126.35068 * 188.28251 * 14 12 11 16 16 C 1.40488 * 107.62200 * 179.97438 * 15 14 12 17 17 C 1.47858 * 125.77013 * 180.02562 * 16 15 14 18 18 C 1.35920 * 125.93008 * 179.97438 * 17 16 15 19 19 C 1.40968 * 106.74464 * 179.75097 * 18 17 16 20 20 C 1.34705 * 107.02613 * 0.37147 * 19 18 17 21 21 O 1.34342 * 108.66631 * 359.62529 * 20 19 18 22 22 N 1.31971 * 108.46419 * 0.26216 * 16 15 14 23 23 N 1.37038 * 126.35800 * 8.26710 * 14 12 11 24 24 C 1.39937 * 126.02854 * 0.02562 * 23 14 12 25 25 C 1.38899 * 120.07552 * 232.40920 * 24 23 14 26 26 C 1.38100 * 119.92476 * 179.67844 * 25 24 23 27 27 C 1.38293 * 120.07338 * 0.61838 * 26 25 24 28 28 C 1.38292 * 120.14722 * 359.67769 * 27 26 25 29 29 C 1.38099 * 120.07096 * 0.02562 * 28 27 26 30 30 H 0.96992 * 120.00117 * 359.97438 * 1 2 3 31 31 H 1.09001 * 109.46803 * 59.99933 * 9 7 2 32 32 H 1.08993 * 109.46700 * 300.00277 * 9 7 2 33 33 H 1.09005 * 109.47028 * 59.99924 * 10 9 7 34 34 H 1.08998 * 109.47688 * 300.00334 * 10 9 7 35 35 H 0.96994 * 120.00048 * 0.02562 * 11 10 9 36 36 H 1.08006 * 126.19092 * 359.97438 * 15 14 12 37 37 H 1.08003 * 126.62594 * 359.97438 * 18 17 16 38 38 H 1.07995 * 126.48803 * 180.27107 * 19 18 17 39 39 H 1.08002 * 125.66879 * 179.88768 * 20 19 18 40 40 H 1.08004 * 120.04198 * 359.97325 * 25 24 23 41 41 H 1.08003 * 119.96916 * 180.32108 * 26 25 24 42 42 H 1.08005 * 119.92967 * 179.70306 * 27 26 25 43 43 H 1.07999 * 119.96426 * 180.02562 * 28 27 26 44 44 H 1.08001 * 120.03666 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2124 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4993 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 7 1.5127 -4.9308 -0.0012 12 6 2.1867 -6.0981 -0.0027 13 8 3.3987 -6.1007 0.0995 14 6 1.4562 -7.3690 -0.1277 15 6 1.9859 -8.6327 0.0144 16 6 0.9450 -9.5550 -0.1841 17 6 1.0709 -11.0269 -0.1220 18 6 0.0661 -11.9221 -0.3130 19 6 0.6322 -13.2050 -0.1683 20 6 1.9388 -13.0306 0.1092 21 8 2.2011 -11.7132 0.1332 22 7 -0.1632 -8.8858 -0.4405 23 7 0.1226 -7.5154 -0.4070 24 6 -0.7913 -6.4784 -0.6255 25 6 -1.9774 -6.4325 0.0959 26 6 -2.8741 -5.4040 -0.1175 27 6 -2.5980 -4.4277 -1.0572 28 6 -1.4208 -4.4739 -1.7815 29 6 -0.5171 -5.4962 -1.5686 30 1 -0.4850 0.8400 0.0004 31 1 0.6240 -2.5567 -0.8903 32 1 0.6247 -2.5571 0.8896 33 1 2.8726 -3.6048 0.8877 34 1 2.8713 -3.6041 -0.8922 35 1 0.5428 -4.9308 -0.0005 36 1 3.0153 -8.8712 0.2381 37 1 -0.9657 -11.6946 -0.5365 38 1 0.1158 -14.1490 -0.2606 39 1 2.6571 -13.8189 0.2794 40 1 -2.1961 -7.1975 0.8262 41 1 -3.7942 -5.3648 0.4467 42 1 -3.3031 -3.6271 -1.2256 43 1 -1.2080 -3.7097 -2.5143 44 1 0.4023 -5.5315 -2.1343 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096009682.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:58 Heat of formation + Delta-G solvation = 95.355034 kcal Electronic energy + Delta-G solvation = -29789.662501 eV Core-core repulsion = 25675.970399 eV Total energy + Delta-G solvation = -4113.692102 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 351.137 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.78405 -41.75183 -39.24111 -38.91846 -35.13362 -34.12659 -33.23173 -32.85573 -31.33049 -30.95038 -30.32731 -29.43388 -28.36413 -25.31853 -24.09539 -23.08006 -22.75521 -21.95437 -21.76030 -20.98700 -20.20627 -19.79995 -18.56653 -17.57852 -16.55996 -16.43571 -16.36554 -15.87888 -15.83328 -15.35347 -15.10025 -14.97436 -14.56431 -14.50574 -14.21800 -13.73809 -13.66531 -13.59265 -13.12483 -13.08576 -12.99441 -12.76111 -12.57268 -12.34543 -11.75401 -11.42981 -11.27561 -11.20337 -11.08272 -10.72375 -10.54983 -10.41948 -10.13836 -10.10848 -9.64885 -9.35398 -9.31127 -9.12933 -8.87591 -8.64036 -8.42995 -8.21394 -6.15167 -4.17916 0.49707 1.06039 1.18944 1.33318 1.80255 2.15847 2.71138 2.84826 3.26867 3.27452 3.31266 3.32413 3.38352 3.52442 4.20991 4.36089 4.57139 4.63288 4.72459 4.75300 4.77575 4.87220 5.04955 5.21973 5.23539 5.25580 5.33883 5.36927 5.44264 5.60120 5.65584 5.80852 5.84425 6.07252 6.15008 6.18995 6.20805 6.22998 6.26423 6.39274 6.51023 6.60252 6.68818 6.75597 6.91491 7.22085 7.42648 7.52360 7.76062 7.82650 8.17883 8.33636 8.86953 9.46937 10.96072 Molecular weight = 351.14amu Principal moments of inertia in cm(-1) A = 0.016311 B = 0.002570 C = 0.002260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.202522 B =10890.369609 C =12385.160059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.061 3.939 3 Si 0.896 3.104 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.523 4.523 8 H 0.059 0.941 9 C 0.016 3.984 10 C 0.117 3.883 11 N -0.717 5.717 12 C 0.572 3.428 13 O -0.522 6.522 14 C 0.046 3.954 15 C -0.172 4.172 16 C 0.135 3.865 17 C 0.059 3.941 18 C -0.166 4.166 19 C -0.216 4.216 20 C -0.026 4.026 21 O -0.164 6.164 22 N -0.238 5.238 23 N -0.298 5.298 24 C 0.115 3.885 25 C -0.098 4.098 26 C -0.106 4.106 27 C -0.094 4.094 28 C -0.088 4.088 29 C -0.112 4.112 30 H 0.262 0.738 31 H 0.024 0.976 32 H 0.021 0.979 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.400 0.600 36 H 0.169 0.831 37 H 0.155 0.845 38 H 0.153 0.847 39 H 0.208 0.792 40 H 0.132 0.868 41 H 0.135 0.865 42 H 0.136 0.864 43 H 0.142 0.858 44 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.668 -21.239 -1.660 22.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.141 4.141 3 Si 0.724 3.276 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.561 4.561 8 H 0.077 0.923 9 C -0.021 4.021 10 C -0.005 4.005 11 N -0.372 5.372 12 C 0.355 3.645 13 O -0.398 6.398 14 C -0.080 4.080 15 C -0.201 4.201 16 C -0.027 4.027 17 C 0.007 3.993 18 C -0.188 4.188 19 C -0.235 4.235 20 C -0.095 4.095 21 O -0.059 6.059 22 N -0.063 5.063 23 N -0.080 5.080 24 C 0.025 3.975 25 C -0.118 4.118 26 C -0.125 4.125 27 C -0.112 4.112 28 C -0.106 4.106 29 C -0.133 4.133 30 H 0.072 0.928 31 H 0.043 0.957 32 H 0.039 0.961 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.240 0.760 36 H 0.187 0.813 37 H 0.173 0.827 38 H 0.171 0.829 39 H 0.225 0.775 40 H 0.150 0.850 41 H 0.153 0.847 42 H 0.154 0.846 43 H 0.160 0.840 44 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -5.905 -20.893 -1.808 21.787 hybrid contribution 0.681 0.777 0.197 1.052 sum -5.224 -20.117 -1.611 20.846 Atomic orbital electron populations 1.69932 1.06007 1.26968 1.50149 1.24965 0.94909 0.99306 0.94903 0.86585 0.79556 0.82663 0.78819 1.20106 1.21246 1.20117 1.20986 0.93223 0.90255 1.51660 0.92267 1.19300 0.94076 0.90861 0.97903 1.21890 0.96304 0.80985 1.01321 1.46978 1.11392 1.06375 1.72456 1.17076 0.86890 0.82120 0.78438 1.90829 1.12539 1.86662 1.49731 1.21768 0.83973 0.96807 1.05415 1.21846 1.01057 0.88569 1.08644 1.18930 0.91974 0.89383 1.02429 1.18630 0.84638 0.88323 1.07695 1.21861 1.00263 0.91515 1.05148 1.21806 0.94746 0.98880 1.08033 1.24205 0.98016 0.82358 1.04910 1.84064 1.34030 1.18366 1.69421 1.77679 1.20455 0.85598 1.22617 1.45945 1.05556 1.03570 1.52922 1.17409 0.91565 0.88439 1.00115 1.21086 0.92650 0.99270 0.98769 1.21118 0.99426 0.93751 0.98212 1.21445 0.97115 0.97974 0.94687 1.21176 0.92809 0.96998 0.99664 1.21258 1.00958 0.94844 0.96216 0.92801 0.95746 0.96068 0.92013 0.92007 0.75970 0.81335 0.82748 0.82943 0.77498 0.84979 0.84704 0.84635 0.83999 0.84809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.79 13.29 55.43 0.74 -24.05 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 20.77 29.54 -169.99 -5.02 15.75 16 4 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 5 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.52 -13.95 9.11 -34.43 -0.31 -14.27 16 8 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 9 C 0.02 0.38 5.09 -27.88 -0.14 0.24 16 10 C 0.12 2.44 5.62 -4.05 -0.02 2.41 16 11 N -0.72 -13.16 4.34 -61.48 -0.27 -13.43 16 12 C 0.57 10.59 7.55 -12.65 -0.10 10.49 16 13 O -0.52 -10.97 16.91 5.25 0.09 -10.88 16 14 C 0.05 0.76 6.79 -82.11 -0.56 0.20 16 15 C -0.17 -2.61 10.58 -38.91 -0.41 -3.02 16 16 C 0.13 1.94 7.06 -83.02 -0.59 1.36 16 17 C 0.06 0.74 7.18 -36.48 -0.26 0.48 16 18 C -0.17 -1.79 10.81 -39.38 -0.43 -2.22 16 19 C -0.22 -1.80 10.89 -39.80 -0.43 -2.23 16 20 C -0.03 -0.21 12.08 29.48 0.36 0.15 16 21 O -0.16 -1.88 10.67 4.60 0.05 -1.83 16 22 N -0.24 -3.57 12.47 33.28 0.42 -3.15 16 23 N -0.30 -4.57 3.68 -7.13 -0.03 -4.60 16 24 C 0.11 1.63 4.84 -83.66 -0.40 1.22 16 25 C -0.10 -1.21 9.95 -39.39 -0.39 -1.60 16 26 C -0.11 -1.16 10.04 -39.61 -0.40 -1.56 16 27 C -0.09 -1.09 10.04 -39.54 -0.40 -1.49 16 28 C -0.09 -1.14 10.04 -39.61 -0.40 -1.53 16 29 C -0.11 -1.57 6.60 -39.38 -0.26 -1.83 16 30 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 31 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 34 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 35 H 0.40 6.88 4.04 -40.82 -0.16 6.71 16 36 H 0.17 2.36 8.06 -52.48 -0.42 1.94 16 37 H 0.15 1.53 8.06 -52.48 -0.42 1.10 16 38 H 0.15 0.86 8.06 -52.49 -0.42 0.44 16 39 H 0.21 0.76 8.06 -52.49 -0.42 0.34 16 40 H 0.13 1.50 8.06 -52.48 -0.42 1.08 16 41 H 0.14 1.10 8.06 -52.48 -0.42 0.68 16 42 H 0.14 1.34 8.06 -52.48 -0.42 0.91 16 43 H 0.14 1.75 8.06 -52.49 -0.42 1.32 16 44 H 0.13 1.92 7.64 -52.49 -0.40 1.52 16 LS Contribution 386.70 15.07 5.83 5.83 Total: -1.00 -31.55 386.70 -8.62 -40.17 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: -5.18 Total: 7.82 kcal Atomic # 6 Polarization: -6.39 SS G_CDS: -5.24 Total: -11.63 kcal Atomic # 7 Polarization: -46.09 SS G_CDS: 0.86 Total: -45.23 kcal Atomic # 8 Polarization: -12.85 SS G_CDS: 0.14 Total: -12.72 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -31.55 -8.62 -40.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096009682.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.525 kcal (2) G-P(sol) polarization free energy of solvation -31.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.170 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds