Wall clock time and date at job start Tue Mar 31 2020 05:07:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38128 * 119.97236 * 2 1 4 4 C 1.38835 * 119.94263 * 180.29564 * 3 2 1 5 5 N 1.39976 * 120.06155 * 179.69989 * 4 3 2 6 6 C 1.46500 * 120.00253 * 247.38718 * 5 4 3 7 7 C 1.50698 * 109.46920 * 89.99580 * 6 5 4 8 8 H 1.07999 * 120.00205 * 0.02562 * 7 6 5 9 9 C 1.37883 * 119.99980 * 180.02562 * 7 6 5 10 10 N 1.31518 * 120.00082 * 180.02562 * 9 7 6 11 11 Si 1.86804 * 119.99864 * 359.97438 * 9 7 6 12 12 H 1.48506 * 109.46678 * 90.00585 * 11 9 7 13 13 H 1.48496 * 109.46918 * 210.00203 * 11 9 7 14 14 H 1.48495 * 109.47002 * 330.00613 * 11 9 7 15 15 C 1.34782 * 120.00011 * 67.65901 * 5 4 3 16 16 O 1.21284 * 119.99782 * 4.74945 * 15 5 4 17 17 C 1.50700 * 119.99920 * 184.74425 * 15 5 4 18 18 N 1.46502 * 109.46842 * 180.02562 * 17 15 5 19 19 N 1.40166 * 126.34786 * 269.68872 * 18 17 15 20 20 C 1.29402 * 108.13847 * 179.81778 * 19 18 17 21 21 N 1.37355 * 108.82914 * 0.44270 * 20 19 18 22 22 H 0.97000 * 125.83662 * 179.67661 * 21 20 19 23 23 C 1.34821 * 108.33717 * 359.71716 * 21 20 19 24 24 O 1.21811 * 126.30533 * 179.97438 * 23 21 20 25 25 C 1.38892 * 119.88514 * 359.42926 * 4 3 2 26 26 C 1.38081 * 119.93842 * 0.27265 * 25 4 3 27 27 C 1.38362 * 119.97098 * 179.72235 * 2 1 3 28 28 Cl 1.73600 * 119.94033 * 0.02562 * 27 2 1 29 29 H 1.09000 * 109.46979 * 270.27787 * 1 2 3 30 30 H 1.09000 * 109.47132 * 30.27315 * 1 2 3 31 31 H 1.08998 * 109.47214 * 150.27784 * 1 2 3 32 32 H 1.08000 * 120.03101 * 359.97438 * 3 2 1 33 33 H 1.08996 * 109.47482 * 209.99556 * 6 5 4 34 34 H 1.09000 * 109.47187 * 330.00154 * 6 5 4 35 35 H 0.96998 * 119.99453 * 179.97438 * 10 9 7 36 36 H 1.08994 * 109.47194 * 300.00104 * 17 15 5 37 37 H 1.09001 * 109.47189 * 60.00082 * 17 15 5 38 38 H 1.08003 * 125.58780 * 180.13870 * 20 19 18 39 39 H 1.07997 * 120.02885 * 180.29434 * 25 4 3 40 40 H 1.08005 * 119.96790 * 180.02562 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1966 0.0000 4 6 3.5854 1.1958 -0.0062 5 7 4.2872 2.4070 -0.0126 6 6 5.0713 2.7931 -1.1883 7 6 4.2029 3.5815 -2.1344 8 1 3.1703 3.7759 -1.8847 9 6 4.7266 4.0547 -3.3189 10 7 3.9688 4.7433 -4.1443 11 14 6.5128 3.7191 -3.7504 12 1 6.6083 2.4441 -4.5058 13 1 7.0374 4.8295 -4.5853 14 1 7.3125 3.6168 -2.5034 15 6 4.2460 3.2154 1.0651 16 8 3.6728 2.8555 2.0715 17 6 4.9123 4.5663 1.0195 18 7 4.7274 5.2455 2.3044 19 7 3.6676 6.0952 2.6499 20 6 3.8525 6.4957 3.8664 21 7 5.0162 5.9432 4.3429 22 1 5.3912 6.0832 5.2265 23 6 5.5489 5.1737 3.3725 24 8 6.5818 4.5322 3.4462 25 6 4.2769 -0.0087 -0.0004 26 6 3.5822 -1.2020 0.0058 27 6 2.1982 -1.1986 0.0058 28 17 1.3279 -2.7006 0.0124 29 1 -0.3633 0.0050 1.0277 30 1 -0.3633 0.8875 -0.5181 31 1 -0.3633 -0.8924 -0.5095 32 1 1.6572 2.1319 -0.0004 33 1 5.9172 3.4054 -0.8758 34 1 5.4369 1.8978 -1.6913 35 1 4.3374 5.0764 -4.9774 36 1 5.9774 4.4397 0.8259 37 1 4.4671 5.1644 0.2245 38 1 3.2012 7.1597 4.4153 39 1 5.3569 -0.0119 -0.0004 40 1 4.1194 -2.1390 0.0107 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096010346.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:25 Heat of formation + Delta-G solvation = 39.074984 kcal Electronic energy + Delta-G solvation = -28411.801456 eV Core-core repulsion = 24255.121586 eV Total energy + Delta-G solvation = -4156.679870 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 350.093 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.28159 -40.17212 -38.50604 -37.13318 -36.38946 -35.29205 -34.35852 -32.83235 -32.36328 -31.17131 -30.05373 -28.09538 -27.41886 -26.74806 -23.20671 -22.70077 -22.64089 -21.96113 -21.03282 -19.06221 -18.33419 -17.26194 -17.21362 -16.69869 -16.35435 -16.04820 -15.76817 -15.60951 -15.29546 -14.67892 -14.47902 -14.10200 -13.94920 -13.84378 -13.29558 -13.02108 -12.65268 -12.51218 -12.35417 -12.29824 -12.21750 -12.03057 -11.92187 -11.73094 -11.36829 -11.32098 -11.12293 -10.82283 -10.81281 -10.58278 -10.39822 -10.21081 -9.77354 -9.53388 -8.83147 -8.73615 -8.56937 -8.48245 -7.84124 -6.31719 -4.35941 1.32428 1.52656 1.89418 2.06597 2.28370 2.78549 2.96227 3.12095 3.18491 3.21380 3.26347 3.56565 3.82426 4.17618 4.65954 4.89694 4.94982 4.96454 5.00322 5.01387 5.39865 5.47573 5.50996 5.61846 5.61961 5.74153 5.75126 5.77601 5.99906 6.12491 6.18961 6.25266 6.35321 6.43386 6.50987 6.72502 6.75650 6.81277 7.25552 7.31799 7.66977 7.75044 8.14558 8.22305 8.55996 8.73234 9.25373 10.80150 Molecular weight = 350.09amu Principal moments of inertia in cm(-1) A = 0.007336 B = 0.004418 C = 0.003163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3815.877394 B = 6335.910287 C = 8851.025644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.067 4.067 3 C -0.089 4.089 4 C 0.184 3.816 5 N -0.554 5.554 6 C 0.206 3.794 7 C -0.549 4.549 8 H 0.082 0.918 9 C 0.082 3.918 10 N -0.883 5.883 11 Si 0.867 3.133 12 H -0.272 1.272 13 H -0.281 1.281 14 H -0.262 1.262 15 C 0.512 3.488 16 O -0.538 6.538 17 C 0.146 3.854 18 N -0.430 5.430 19 N -0.263 5.263 20 C 0.245 3.755 21 N -0.662 5.662 22 H 0.436 0.564 23 C 0.651 3.349 24 O -0.557 6.557 25 C -0.120 4.120 26 C -0.099 4.099 27 C -0.046 4.046 28 Cl -0.081 7.081 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.132 0.868 33 H 0.040 0.960 34 H 0.038 0.962 35 H 0.268 0.732 36 H 0.124 0.876 37 H 0.145 0.855 38 H 0.232 0.768 39 H 0.132 0.868 40 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.890 -1.997 12.221 12.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.069 4.069 3 C -0.109 4.109 4 C 0.092 3.908 5 N -0.282 5.282 6 C 0.086 3.914 7 C -0.587 4.587 8 H 0.100 0.900 9 C -0.123 4.123 10 N -0.520 5.520 11 Si 0.693 3.307 12 H -0.197 1.197 13 H -0.206 1.206 14 H -0.187 1.187 15 C 0.299 3.701 16 O -0.415 6.415 17 C 0.022 3.978 18 N -0.251 5.251 19 N -0.084 5.084 20 C -0.056 4.056 21 N -0.315 5.315 22 H 0.278 0.722 23 C 0.349 3.651 24 O -0.431 6.431 25 C -0.139 4.139 26 C -0.118 4.118 27 C -0.073 4.073 28 Cl -0.052 7.052 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.150 0.850 33 H 0.057 0.943 34 H 0.056 0.944 35 H 0.079 0.921 36 H 0.142 0.858 37 H 0.163 0.837 38 H 0.248 0.752 39 H 0.150 0.850 40 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -2.165 -2.652 11.537 12.034 hybrid contribution 1.440 -0.137 0.453 1.516 sum -0.725 -2.788 11.990 12.332 Atomic orbital electron populations 1.20837 0.90339 1.03418 1.02635 1.19561 0.96617 0.90880 0.99808 1.21081 0.93179 0.97535 0.99122 1.17555 0.90546 0.85600 0.97053 1.45569 1.48763 1.17192 1.16660 1.20061 0.91496 0.96878 0.82949 1.21272 0.99449 1.34856 1.03108 0.89968 1.24830 0.97605 0.94164 0.95683 1.69875 1.36174 1.35177 1.10733 0.86989 0.85350 0.78821 0.79524 1.19715 1.20635 1.18688 1.20763 0.80617 0.86152 0.82555 1.90680 1.44642 1.74836 1.31373 1.21393 1.03510 0.91237 0.81689 1.48368 1.20011 1.42959 1.13757 1.77044 1.09962 1.08525 1.12893 1.25879 0.89122 0.98702 0.91867 1.43781 1.23970 1.46075 1.17699 0.72204 1.16723 0.84771 0.82033 0.81547 1.91100 1.23498 1.47173 1.81323 1.21127 1.00355 0.90873 1.01586 1.20755 0.91730 0.98437 1.00863 1.20675 0.92166 0.86107 1.08346 1.98321 1.77016 1.32725 1.97114 0.90907 0.90936 0.90949 0.85020 0.94262 0.94424 0.92138 0.85846 0.83745 0.75202 0.85040 0.84946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.52 9.61 36.01 0.35 -1.18 16 2 C -0.07 -1.08 5.88 -104.61 -0.62 -1.70 16 3 C -0.09 -1.66 9.19 -39.40 -0.36 -2.02 16 4 C 0.18 3.55 4.76 -83.68 -0.40 3.15 16 5 N -0.55 -11.18 2.51 -114.73 -0.29 -11.46 16 6 C 0.21 4.32 3.95 -5.19 -0.02 4.30 16 7 C -0.55 -13.59 9.73 -34.44 -0.34 -13.92 16 8 H 0.08 2.27 8.06 -52.49 -0.42 1.85 16 9 C 0.08 2.11 5.47 -17.82 -0.10 2.01 16 10 N -0.88 -24.54 13.96 55.43 0.77 -23.76 16 11 Si 0.87 18.93 27.47 -169.99 -4.67 14.26 16 12 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 13 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 14 H -0.26 -5.34 6.54 56.52 0.37 -4.97 16 15 C 0.51 10.42 7.59 -10.98 -0.08 10.34 16 16 O -0.54 -12.15 16.18 5.55 0.09 -12.06 16 17 C 0.15 2.64 5.54 -5.19 -0.03 2.61 16 18 N -0.43 -7.41 3.11 -66.31 -0.21 -7.61 16 19 N -0.26 -3.89 12.53 29.87 0.37 -3.52 16 20 C 0.25 2.34 13.13 -89.12 -1.17 1.17 16 21 N -0.66 -7.16 6.08 -17.36 -0.11 -7.27 16 22 H 0.44 3.01 8.96 -40.82 -0.37 2.64 16 23 C 0.65 10.88 9.02 -86.73 -0.78 10.10 16 24 O -0.56 -11.14 17.91 5.09 0.09 -11.05 16 25 C -0.12 -2.02 9.68 -39.40 -0.38 -2.40 16 26 C -0.10 -1.48 9.82 -39.58 -0.39 -1.87 16 27 C -0.05 -0.71 6.31 -39.48 -0.25 -0.96 16 28 Cl -0.08 -1.05 27.28 -51.86 -1.41 -2.47 16 29 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 30 H 0.07 0.92 8.09 -51.93 -0.42 0.50 16 31 H 0.07 0.88 6.89 -51.93 -0.36 0.52 16 32 H 0.13 2.51 8.06 -52.49 -0.42 2.09 16 33 H 0.04 0.78 5.52 -51.93 -0.29 0.49 16 34 H 0.04 0.78 7.28 -51.93 -0.38 0.40 16 35 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 36 H 0.12 2.08 7.21 -51.93 -0.37 1.71 16 37 H 0.14 2.61 7.93 -51.93 -0.41 2.20 16 38 H 0.23 0.75 8.06 -52.48 -0.42 0.33 16 39 H 0.13 2.01 8.06 -52.49 -0.42 1.59 16 40 H 0.13 1.63 8.06 -52.48 -0.42 1.21 16 LS Contribution 366.11 15.07 5.52 5.52 Total: -1.00 -34.72 366.11 -8.70 -43.42 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: -4.30 Total: 6.36 kcal Atomic # 6 Polarization: 14.21 SS G_CDS: -4.57 Total: 9.64 kcal Atomic # 7 Polarization: -54.17 SS G_CDS: 0.55 Total: -53.62 kcal Atomic # 8 Polarization: -23.29 SS G_CDS: 0.18 Total: -23.11 kcal Atomic # 14 Polarization: 18.93 SS G_CDS: -4.67 Total: 14.26 kcal Atomic # 17 Polarization: -1.05 SS G_CDS: -1.41 Total: -2.47 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -34.72 -8.70 -43.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096010346.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.496 kcal (2) G-P(sol) polarization free energy of solvation -34.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.421 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds