Wall clock time and date at job start Tue Mar 31 2020 06:00:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86796 * 119.99833 * 2 1 4 4 H 1.48511 * 109.46825 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47223 * 299.99995 * 3 2 1 6 6 H 1.48498 * 109.47140 * 60.00612 * 3 2 1 7 7 C 1.37876 * 119.99567 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99688 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00470 * 0.02562 * 7 2 1 10 10 N 1.46496 * 109.47188 * 180.02562 * 9 7 2 11 11 C 1.34779 * 119.99419 * 269.99550 * 10 9 7 12 12 O 1.21290 * 120.00474 * 359.97438 * 11 10 9 13 13 C 1.50703 * 119.99960 * 180.02562 * 11 10 9 14 14 S 1.81399 * 109.47459 * 179.97438 * 13 11 10 15 15 C 1.76194 * 103.00143 * 180.02562 * 14 13 11 16 16 C 1.34175 * 125.24396 * 180.02562 * 15 14 13 17 17 C 1.38549 * 114.71357 * 179.97438 * 16 15 14 18 18 C 1.33243 * 114.99090 * 359.97438 * 17 16 15 19 19 S 1.75859 * 109.75494 * 359.75772 * 18 17 16 20 20 C 1.40041 * 120.00412 * 89.99626 * 10 9 7 21 21 C 1.38818 * 120.07555 * 269.99787 * 20 10 9 22 22 C 1.38145 * 119.95024 * 179.97438 * 21 20 10 23 23 C 1.38278 * 120.11599 * 0.02562 * 22 21 20 24 24 C 1.38269 * 120.15499 * 359.97438 * 23 22 21 25 25 C 1.38316 * 120.04504 * 359.97438 * 24 23 22 26 26 F 1.35101 * 120.05374 * 180.02562 * 25 24 23 27 27 H 0.96994 * 119.99770 * 359.97438 * 1 2 3 28 28 H 1.08992 * 109.47346 * 59.99113 * 9 7 2 29 29 H 1.09001 * 109.46065 * 299.99629 * 9 7 2 30 30 H 1.09001 * 109.47128 * 299.99888 * 13 11 10 31 31 H 1.09002 * 109.46798 * 59.99813 * 13 11 10 32 32 H 1.08006 * 122.64262 * 359.95944 * 16 15 14 33 33 H 1.08000 * 122.50576 * 180.02562 * 17 16 15 34 34 H 1.07998 * 125.12192 * 180.02562 * 18 17 16 35 35 H 1.07997 * 120.02345 * 0.25605 * 21 20 10 36 36 H 1.07997 * 119.93787 * 179.97438 * 22 21 20 37 37 H 1.07997 * 119.92497 * 179.97438 * 23 22 21 38 38 H 1.08000 * 119.97649 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7093 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3963 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0018 11 6 2.6417 -4.1254 -1.1650 12 8 2.2480 -3.6653 -2.2158 13 6 3.6205 -5.2713 -1.1638 14 16 4.0142 -5.7321 -2.8736 15 6 5.1506 -7.0636 -2.6736 16 6 5.7313 -7.7429 -3.6745 17 6 6.5915 -8.7501 -3.2683 18 6 6.7113 -8.8900 -1.9487 19 16 5.7055 -7.7014 -1.1313 20 6 2.6572 -4.1444 1.2151 21 6 3.7959 -3.6279 1.8181 22 6 4.2413 -4.1540 3.0153 23 6 3.5552 -5.1947 3.6139 24 6 2.4204 -5.7126 3.0173 25 6 1.9681 -5.1901 1.8191 26 9 0.8590 -5.6957 1.2363 27 1 -0.4849 0.8400 0.0004 28 1 0.6246 -2.5571 -0.8895 29 1 0.6241 -2.5566 0.8904 30 1 4.5328 -4.9693 -0.6493 31 1 3.1794 -6.1254 -0.6501 32 1 5.5427 -7.5220 -4.7148 33 1 7.1258 -9.3746 -3.9690 34 1 7.3355 -9.6203 -1.4554 35 1 4.3306 -2.8124 1.3539 36 1 5.1275 -3.7523 3.4840 37 1 3.9064 -5.6039 4.5496 38 1 1.8865 -6.5251 3.4875 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096406150.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:50 Heat of formation + Delta-G solvation = -6.567170 kcal Electronic energy + Delta-G solvation = -25559.401801 eV Core-core repulsion = 21727.900692 eV Total energy + Delta-G solvation = -3831.501109 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 351.050 amu Computer time = 2.18 seconds Orbital eigenvalues (eV) -48.68504 -39.90043 -38.28356 -37.67076 -35.10836 -32.83195 -30.58088 -30.37898 -29.66626 -29.47832 -26.88712 -24.29867 -22.99597 -22.98364 -22.50856 -20.10113 -19.23115 -18.50470 -17.48445 -16.88261 -16.76914 -16.36383 -16.04089 -15.71106 -15.28283 -15.04173 -14.97343 -14.89676 -14.24008 -13.98134 -13.50241 -13.42455 -13.20192 -13.13167 -12.71117 -12.61038 -12.46850 -12.18820 -12.12933 -11.95321 -11.44800 -11.21639 -11.14488 -10.99863 -10.72736 -10.26475 -10.21998 -9.84147 -9.79728 -9.62339 -8.85445 -8.67814 -8.56435 -8.47307 -8.14130 -7.36173 -6.13279 -4.18819 0.75867 1.11659 1.15674 1.25457 1.28623 1.81465 2.45806 2.56702 2.96597 3.25289 3.33050 3.35416 3.53523 3.60442 4.32764 4.36921 4.60458 4.81471 4.89340 4.93521 5.03339 5.17685 5.19013 5.22455 5.25022 5.40604 5.41069 5.74650 5.84054 6.04405 6.09015 6.10553 6.25916 6.39886 6.41032 6.71690 6.99407 7.17894 7.31218 7.80742 8.06233 8.08153 8.59856 8.84357 9.46057 10.95419 Molecular weight = 351.05amu Principal moments of inertia in cm(-1) A = 0.010950 B = 0.003738 C = 0.003181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2556.575780 B = 7488.213356 C = 8801.217372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.064 3.936 3 Si 0.900 3.100 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.283 1.283 7 C -0.529 4.529 8 H 0.060 0.940 9 C 0.251 3.749 10 N -0.553 5.553 11 C 0.537 3.463 12 O -0.505 6.505 13 C -0.158 4.158 14 S 0.037 5.963 15 C -0.205 4.205 16 C -0.126 4.126 17 C -0.117 4.117 18 C -0.220 4.220 19 S 0.101 5.899 20 C 0.114 3.886 21 C -0.079 4.079 22 C -0.125 4.125 23 C -0.095 4.095 24 C -0.152 4.152 25 C 0.094 3.906 26 F -0.132 7.132 27 H 0.264 0.736 28 H 0.052 0.948 29 H 0.036 0.964 30 H 0.114 0.886 31 H 0.110 0.890 32 H 0.144 0.856 33 H 0.142 0.858 34 H 0.164 0.836 35 H 0.140 0.860 36 H 0.131 0.869 37 H 0.131 0.869 38 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.753 -17.457 3.842 21.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.139 4.139 3 Si 0.727 3.273 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.209 1.209 7 C -0.568 4.568 8 H 0.078 0.922 9 C 0.134 3.866 10 N -0.282 5.282 11 C 0.322 3.678 12 O -0.380 6.380 13 C -0.310 4.310 14 S 0.277 5.723 15 C -0.434 4.434 16 C -0.165 4.165 17 C -0.149 4.149 18 C -0.359 4.359 19 S 0.360 5.640 20 C 0.022 3.978 21 C -0.099 4.099 22 C -0.143 4.143 23 C -0.113 4.113 24 C -0.172 4.172 25 C 0.073 3.927 26 F -0.111 7.111 27 H 0.074 0.926 28 H 0.070 0.930 29 H 0.054 0.946 30 H 0.133 0.867 31 H 0.129 0.871 32 H 0.162 0.838 33 H 0.160 0.840 34 H 0.181 0.819 35 H 0.158 0.842 36 H 0.149 0.851 37 H 0.149 0.851 38 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 11.501 -16.131 3.764 20.165 hybrid contribution 1.013 -0.105 -0.106 1.024 sum 12.514 -16.236 3.658 20.822 Atomic orbital electron populations 1.69943 1.06024 1.27144 1.49836 1.24924 0.94897 0.99271 0.94815 0.86412 0.79953 0.83198 0.77697 1.19704 1.20747 1.20891 1.21362 0.93354 0.90243 1.51853 0.92179 1.19509 0.86795 0.81205 0.99081 1.45746 1.45840 1.35293 1.01355 1.19195 0.81531 0.82650 0.84402 1.90749 1.56944 1.60479 1.29802 1.23996 1.04292 1.02821 0.99899 1.86109 1.48067 1.31871 1.06245 1.26659 1.09191 1.07724 0.99838 1.19895 0.99588 0.97361 0.99620 1.20123 1.00246 0.99312 0.95176 1.25505 1.07327 1.05443 0.97597 1.84426 1.42234 1.30080 1.07267 1.17753 0.95284 0.94527 0.90265 1.21508 0.94843 0.98455 0.95044 1.21130 1.00725 0.97061 0.95419 1.20996 0.94377 0.96302 0.99629 1.21036 0.98906 1.02488 0.94727 1.18150 0.85406 0.95501 0.93623 1.91512 1.49869 1.85892 1.83815 0.92582 0.93003 0.94614 0.86740 0.87127 0.83838 0.83993 0.81864 0.84223 0.85098 0.85081 0.84662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.13 13.29 55.43 0.74 -25.39 16 2 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 3 Si 0.90 21.42 29.54 -169.99 -5.02 16.40 16 4 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.53 -14.57 9.39 -34.44 -0.32 -14.89 16 8 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 9 C 0.25 6.54 5.15 -5.19 -0.03 6.51 16 10 N -0.55 -11.81 2.32 -114.67 -0.27 -12.07 16 11 C 0.54 11.25 7.67 -10.98 -0.08 11.16 16 12 O -0.51 -12.49 15.45 5.55 0.09 -12.40 16 13 C -0.16 -2.53 4.32 36.01 0.16 -2.38 16 14 S 0.04 0.57 21.22 -107.50 -2.28 -1.71 16 15 C -0.20 -2.68 6.69 29.30 0.20 -2.49 16 16 C -0.13 -1.45 10.13 -40.90 -0.41 -1.86 16 17 C -0.12 -1.11 10.17 -41.21 -0.42 -1.53 16 18 C -0.22 -2.06 11.21 28.99 0.32 -1.73 16 19 S 0.10 1.14 22.32 -107.50 -2.40 -1.26 16 20 C 0.11 2.00 3.93 -83.59 -0.33 1.68 16 21 C -0.08 -1.19 9.97 -39.40 -0.39 -1.58 16 22 C -0.12 -1.43 10.04 -39.60 -0.40 -1.82 16 23 C -0.09 -0.98 10.04 -39.56 -0.40 -1.38 16 24 C -0.15 -1.85 10.02 -39.54 -0.40 -2.24 16 25 C 0.09 1.50 7.31 -39.25 -0.29 1.21 16 26 F -0.13 -2.33 17.08 2.25 0.04 -2.30 16 27 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 28 H 0.05 1.51 7.42 -51.93 -0.39 1.13 16 29 H 0.04 0.97 8.05 -51.93 -0.42 0.55 16 30 H 0.11 1.64 8.10 -51.92 -0.42 1.22 16 31 H 0.11 1.63 8.10 -51.92 -0.42 1.21 16 32 H 0.14 1.47 8.06 -52.48 -0.42 1.05 16 33 H 0.14 0.98 8.06 -52.49 -0.42 0.55 16 34 H 0.16 1.09 8.06 -52.49 -0.42 0.67 16 35 H 0.14 2.17 8.06 -52.49 -0.42 1.75 16 36 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 37 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 38 H 0.14 1.31 8.06 -52.49 -0.42 0.89 16 LS Contribution 368.21 15.07 5.55 5.55 Total: -1.00 -32.28 368.21 -10.60 -42.88 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: -4.15 Total: -0.03 kcal Atomic # 6 Polarization: -6.78 SS G_CDS: -2.89 Total: -9.66 kcal Atomic # 7 Polarization: -37.93 SS G_CDS: 0.47 Total: -37.46 kcal Atomic # 8 Polarization: -12.49 SS G_CDS: 0.09 Total: -12.40 kcal Atomic # 9 Polarization: -2.33 SS G_CDS: 0.04 Total: -2.30 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: 1.71 SS G_CDS: -4.68 Total: -2.97 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.28 -10.60 -42.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096406150.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.309 kcal (2) G-P(sol) polarization free energy of solvation -32.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.19 seconds