Wall clock time and date at job start Tue Mar 31 2020 05:14:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30115 * 125.45989 * 2 1 4 4 C 1.35194 * 108.65077 * 180.02562 * 3 2 1 5 5 C 1.48382 * 126.32642 * 179.97438 * 4 3 2 6 6 C 1.39350 * 120.12323 * 0.03096 * 5 4 3 7 7 C 1.38011 * 119.87712 * 180.02562 * 6 5 4 8 8 C 1.38326 * 120.12536 * 0.02562 * 7 6 5 9 9 S 1.76197 * 119.87737 * 179.97438 * 8 7 6 10 10 O 1.42102 * 106.40509 * 336.46472 * 9 8 7 11 11 O 1.42098 * 106.40463 * 203.53846 * 9 8 7 12 12 N 1.65611 * 107.21582 * 90.00082 * 9 8 7 13 13 C 1.46499 * 119.99954 * 269.99639 * 12 9 8 14 14 C 1.46499 * 119.99775 * 89.99887 * 12 9 8 15 15 H 1.09002 * 109.47391 * 359.97438 * 14 12 9 16 16 C 1.53000 * 109.46840 * 120.00228 * 14 12 9 17 17 C 1.50699 * 109.47060 * 239.99970 * 14 12 9 18 18 H 1.07999 * 120.00019 * 0.02562 * 17 14 12 19 19 C 1.37877 * 120.00129 * 180.02562 * 17 14 12 20 20 N 1.31519 * 119.99723 * 359.97438 * 19 17 14 21 21 Si 1.86803 * 119.99900 * 179.97438 * 19 17 14 22 22 H 1.48495 * 109.47112 * 60.00201 * 21 19 17 23 23 H 1.48503 * 109.47000 * 179.97438 * 21 19 17 24 24 H 1.48496 * 109.46939 * 299.99464 * 21 19 17 25 25 C 1.38319 * 120.24180 * 0.23147 * 8 7 6 26 26 C 1.38015 * 120.12280 * 359.49221 * 25 8 7 27 27 C 1.35540 * 107.34697 * 0.26202 * 4 3 2 28 28 O 1.33974 * 125.46046 * 180.02562 * 2 1 3 29 29 H 1.09001 * 109.46853 * 90.00320 * 1 2 3 30 30 H 1.09002 * 109.47207 * 210.00313 * 1 2 3 31 31 H 1.08999 * 109.47651 * 330.00259 * 1 2 3 32 32 H 1.08005 * 120.05931 * 359.97438 * 6 5 4 33 33 H 1.08005 * 119.93896 * 179.97438 * 7 6 5 34 34 H 1.08994 * 109.47057 * 270.00018 * 13 12 9 35 35 H 1.09006 * 109.46711 * 30.00180 * 13 12 9 36 36 H 1.08998 * 109.46853 * 149.99973 * 13 12 9 37 37 H 1.08992 * 109.47399 * 59.99666 * 16 14 12 38 38 H 1.09004 * 109.46724 * 180.02562 * 16 14 12 39 39 H 1.09001 * 109.47194 * 299.99493 * 16 14 12 40 40 H 0.97003 * 119.99231 * 179.97438 * 20 19 17 41 41 H 1.08004 * 119.93655 * 179.74243 * 25 8 7 42 42 H 1.08000 * 120.06119 * 180.27187 * 26 25 8 43 43 H 1.07995 * 126.51997 * 179.73402 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2618 1.0598 0.0000 4 6 3.5560 0.6689 -0.0006 5 6 4.7431 1.5590 -0.0013 6 6 4.5796 2.9429 -0.0008 7 6 5.6873 3.7661 -0.0020 8 6 6.9581 3.2199 -0.0043 9 16 8.3678 4.2770 -0.0065 10 8 7.9381 5.5178 -0.5499 11 8 9.4377 3.5181 -0.5529 12 7 8.7626 4.5708 1.5748 13 6 8.1762 5.7159 2.2756 14 6 9.6984 3.6857 2.2726 15 1 10.0263 2.8970 1.5955 16 6 10.9108 4.4929 2.7412 17 6 9.0132 3.0704 3.4655 18 1 7.9835 3.3139 3.6818 19 6 9.7008 2.1965 4.2806 20 7 10.9546 1.8995 4.0169 21 14 8.8516 1.4343 5.7596 22 1 7.6749 0.6506 5.3053 23 1 9.8001 0.5369 6.4670 24 1 8.4047 2.5089 6.6819 25 6 7.1264 1.8470 -0.0102 26 6 6.0257 1.0143 -0.0032 27 6 3.5687 -0.6865 -0.0068 28 8 2.2842 -1.0912 -0.0005 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3634 -0.8900 0.5139 31 1 -0.3634 0.8900 0.5138 32 1 3.5877 3.3704 -0.0003 33 1 5.5616 4.8388 -0.0021 34 1 8.8155 6.5887 2.1440 35 1 7.1875 5.9246 1.8667 36 1 8.0890 5.4860 3.3375 37 1 10.5827 5.2814 3.4184 38 1 11.6073 3.8342 3.2601 39 1 11.4065 4.9380 1.8784 40 1 11.4384 1.2850 4.5906 41 1 8.1209 1.4259 -0.0161 42 1 6.1583 -0.0575 -0.0034 43 1 4.4426 -1.3210 -0.0130 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096409579.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:02 Heat of formation + Delta-G solvation = -22.095221 kcal Electronic energy + Delta-G solvation = -28633.021401 eV Core-core repulsion = 24579.273042 eV Total energy + Delta-G solvation = -4053.748359 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 350.113 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.56571 -39.04074 -36.72112 -36.16959 -35.29332 -35.19534 -33.06614 -32.62550 -31.00747 -30.69459 -29.09993 -27.66127 -25.53839 -25.19498 -24.16110 -22.93450 -21.55735 -20.99366 -20.72536 -18.61355 -17.87103 -17.17830 -17.02627 -16.75402 -16.41775 -15.99202 -15.56755 -14.97765 -14.44663 -14.40850 -14.29356 -13.93885 -13.52867 -13.51497 -13.36548 -13.24602 -13.07901 -12.86577 -12.70399 -12.31772 -11.99537 -11.80850 -11.59873 -11.54877 -11.39201 -11.22733 -11.20439 -10.98139 -10.88849 -10.77893 -10.52700 -10.45124 -10.21787 -10.07203 -9.76973 -9.28735 -8.91364 -8.50319 -8.46721 -7.96878 -6.11916 -4.20229 0.48438 1.04603 1.36080 1.46310 2.43131 2.48252 3.23794 3.29460 3.31404 3.55524 3.58511 3.85277 4.32679 4.33630 4.37175 4.57223 4.70128 4.91352 4.96813 4.99500 5.10070 5.18672 5.22972 5.36699 5.42729 5.56020 5.62406 5.65505 5.75594 5.85136 6.07596 6.17381 6.27508 6.30936 6.32385 6.41658 6.66067 6.85627 6.88081 6.91632 7.09422 7.43117 7.43629 7.60109 7.75700 8.02505 8.23221 8.82882 9.46234 10.93005 Molecular weight = 350.11amu Principal moments of inertia in cm(-1) A = 0.010466 B = 0.003622 C = 0.002963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2674.798925 B = 7729.146402 C = 9448.837789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.192 3.808 3 N -0.472 5.472 4 C 0.024 3.976 5 C 0.029 3.971 6 C -0.116 4.116 7 C -0.023 4.023 8 C -0.661 4.661 9 S 2.685 3.315 10 O -0.976 6.976 11 O -0.959 6.959 12 N -0.979 5.979 13 C 0.104 3.896 14 C 0.266 3.734 15 H 0.061 0.939 16 C -0.144 4.144 17 C -0.528 4.528 18 H 0.063 0.937 19 C 0.067 3.933 20 N -0.886 5.886 21 Si 0.894 3.106 22 H -0.278 1.278 23 H -0.286 1.286 24 H -0.276 1.276 25 C -0.002 4.002 26 C -0.129 4.129 27 C -0.053 4.053 28 O -0.200 6.200 29 H 0.093 0.907 30 H 0.089 0.911 31 H 0.101 0.899 32 H 0.136 0.864 33 H 0.140 0.860 34 H 0.046 0.954 35 H 0.051 0.949 36 H 0.081 0.919 37 H 0.033 0.967 38 H 0.093 0.907 39 H 0.014 0.986 40 H 0.264 0.736 41 H 0.147 0.853 42 H 0.130 0.870 43 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.267 -3.352 -6.956 18.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.016 4.016 3 N -0.201 5.201 4 C -0.095 4.095 5 C 0.028 3.972 6 C -0.135 4.135 7 C -0.042 4.042 8 C -0.746 4.746 9 S 2.775 3.225 10 O -0.966 6.966 11 O -0.949 6.949 12 N -0.819 5.819 13 C -0.042 4.042 14 C 0.164 3.836 15 H 0.079 0.921 16 C -0.204 4.204 17 C -0.567 4.567 18 H 0.081 0.919 19 C -0.136 4.136 20 N -0.525 5.525 21 Si 0.722 3.278 22 H -0.204 1.204 23 H -0.212 1.212 24 H -0.202 1.202 25 C -0.022 4.022 26 C -0.149 4.149 27 C -0.124 4.124 28 O -0.087 6.087 29 H 0.112 0.888 30 H 0.108 0.892 31 H 0.120 0.880 32 H 0.153 0.847 33 H 0.157 0.843 34 H 0.065 0.935 35 H 0.070 0.930 36 H 0.100 0.900 37 H 0.052 0.948 38 H 0.112 0.888 39 H 0.033 0.967 40 H 0.074 0.926 41 H 0.165 0.835 42 H 0.148 0.852 43 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -15.972 -2.581 -7.613 17.881 hybrid contribution -0.681 -1.670 1.335 2.245 sum -16.654 -4.251 -6.278 18.298 Atomic orbital electron populations 1.20277 0.81111 1.05269 1.04765 1.26316 0.96627 0.78502 1.00173 1.70451 1.01219 1.30055 1.18415 1.20226 0.91254 0.91460 1.06510 1.17951 0.89414 0.92354 0.97441 1.21219 0.99364 0.92186 1.00747 1.20841 0.90686 1.00279 0.92403 1.31390 1.17857 1.09965 1.15361 1.02114 0.73563 0.73381 0.73483 1.93512 1.83485 1.41968 1.77612 1.93553 1.51741 1.72630 1.76987 1.57426 1.56808 1.37380 1.30317 1.21249 0.96087 0.87326 0.99537 1.18791 0.85284 0.87088 0.92474 0.92129 1.22053 0.99795 0.99819 0.98733 1.21360 0.98492 1.26274 1.10578 0.91923 1.24888 0.94828 0.96237 0.97654 1.69870 1.09036 1.34868 1.38681 0.86630 0.79261 0.79227 0.82715 1.20353 1.21186 1.20198 1.20850 0.99846 0.91336 0.90123 1.21116 0.91132 1.00069 1.02550 1.25115 0.84864 0.95908 1.06472 1.84429 1.16828 1.37662 1.69776 0.88830 0.89238 0.87994 0.84657 0.84255 0.93500 0.92990 0.90026 0.94778 0.88810 0.96716 0.92554 0.83506 0.85216 0.76182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.31 10.51 36.00 0.38 0.07 16 2 C 0.19 2.03 8.32 -13.01 -0.11 1.92 16 3 N -0.47 -6.32 11.00 -7.67 -0.08 -6.41 16 4 C 0.02 0.32 6.87 -83.17 -0.57 -0.25 16 5 C 0.03 0.44 5.88 -104.89 -0.62 -0.18 16 6 C -0.12 -1.74 9.70 -39.25 -0.38 -2.13 16 7 C -0.02 -0.36 9.51 -39.63 -0.38 -0.74 16 8 C -0.66 -11.65 5.98 -39.52 -0.24 -11.88 16 9 S 2.68 52.65 5.64 -107.50 -0.61 52.04 16 10 O -0.98 -19.55 16.34 -57.17 -0.93 -20.48 16 11 O -0.96 -21.16 15.83 -57.17 -0.90 -22.06 16 12 N -0.98 -20.07 3.06 -115.85 -0.35 -20.42 16 13 C 0.10 1.83 9.28 59.85 0.56 2.39 16 14 C 0.27 6.35 2.62 -69.08 -0.18 6.17 16 15 H 0.06 1.57 6.91 -51.93 -0.36 1.21 16 16 C -0.14 -3.36 8.97 37.16 0.33 -3.03 16 17 C -0.53 -13.33 7.99 -34.44 -0.28 -13.61 16 18 H 0.06 1.56 7.33 -52.49 -0.38 1.17 16 19 C 0.07 1.73 5.30 -17.82 -0.09 1.63 16 20 N -0.89 -23.85 11.32 55.43 0.63 -23.22 16 21 Si 0.89 20.28 29.54 -169.99 -5.02 15.26 16 22 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 23 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 24 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 25 C 0.00 -0.04 9.51 -39.63 -0.38 -0.42 16 26 C -0.13 -1.88 9.57 -39.25 -0.38 -2.26 16 27 C -0.05 -0.58 11.57 29.77 0.34 -0.24 16 28 O -0.20 -2.20 10.76 5.55 0.06 -2.14 16 29 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.14 1.84 7.87 -52.48 -0.41 1.43 16 33 H 0.14 1.96 7.61 -52.48 -0.40 1.56 16 34 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.05 0.78 7.79 -51.93 -0.40 0.38 16 36 H 0.08 1.46 7.02 -51.93 -0.36 1.10 16 37 H 0.03 0.74 7.67 -51.93 -0.40 0.34 16 38 H 0.09 2.37 6.07 -51.93 -0.32 2.06 16 39 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 16 40 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 41 H 0.15 2.46 7.60 -52.48 -0.40 2.06 16 42 H 0.13 1.44 7.03 -52.49 -0.37 1.07 16 43 H 0.22 1.65 7.30 -52.49 -0.38 1.27 16 LS Contribution 375.59 15.07 5.66 5.66 Total: -1.00 -32.88 375.59 -8.98 -41.86 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -5.44 Total: 2.47 kcal Atomic # 6 Polarization: -20.57 SS G_CDS: -1.98 Total: -22.55 kcal Atomic # 7 Polarization: -50.24 SS G_CDS: 0.19 Total: -50.06 kcal Atomic # 8 Polarization: -42.90 SS G_CDS: -1.78 Total: -44.68 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Atomic # 16 Polarization: 52.65 SS G_CDS: -0.61 Total: 52.04 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.88 -8.98 -41.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096409579.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.761 kcal (2) G-P(sol) polarization free energy of solvation -32.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds