Wall clock time and date at job start Tue Mar 31 2020 05:14:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30104 * 125.45623 * 2 1 4 4 C 1.35197 * 108.65202 * 179.97438 * 3 2 1 5 5 C 1.48391 * 126.33293 * 179.97438 * 4 3 2 6 6 C 1.39338 * 120.12534 * 179.71860 * 5 4 3 7 7 C 1.38016 * 119.87690 * 179.76675 * 6 5 4 8 8 C 1.38321 * 120.12104 * 0.53930 * 7 6 5 9 9 S 1.76202 * 119.87690 * 179.71828 * 8 7 6 10 10 O 1.42100 * 106.40342 * 23.51533 * 9 8 7 11 11 O 1.42101 * 106.40220 * 156.44218 * 9 8 7 12 12 N 1.65610 * 107.21844 * 269.97817 * 9 8 7 13 13 C 1.46497 * 119.99518 * 270.00233 * 12 9 8 14 14 C 1.46495 * 120.00073 * 89.99608 * 12 9 8 15 15 H 1.09004 * 109.47151 * 0.02562 * 14 12 9 16 16 C 1.52995 * 109.47348 * 240.00174 * 14 12 9 17 17 C 1.50701 * 109.46594 * 119.99968 * 14 12 9 18 18 H 1.07991 * 120.00289 * 35.00624 * 17 14 12 19 19 C 1.37879 * 120.00055 * 214.99893 * 17 14 12 20 20 N 1.31509 * 120.00149 * 184.91779 * 19 17 14 21 21 Si 1.86803 * 119.99873 * 4.92228 * 19 17 14 22 22 H 1.48506 * 109.47334 * 84.83267 * 21 19 17 23 23 H 1.48503 * 109.47255 * 204.83210 * 21 19 17 24 24 H 1.48496 * 109.47087 * 324.83519 * 21 19 17 25 25 C 1.38319 * 120.24506 * 359.69614 * 8 7 6 26 26 C 1.38014 * 120.12481 * 0.04581 * 25 8 7 27 27 C 1.35538 * 107.34341 * 359.97438 * 4 3 2 28 28 O 1.33976 * 125.46513 * 180.25860 * 2 1 3 29 29 H 1.09002 * 109.47090 * 90.00908 * 1 2 3 30 30 H 1.09008 * 109.46682 * 210.00199 * 1 2 3 31 31 H 1.08992 * 109.47634 * 330.00334 * 1 2 3 32 32 H 1.07999 * 120.06200 * 0.02841 * 6 5 4 33 33 H 1.08006 * 119.93950 * 180.23025 * 7 6 5 34 34 H 1.09002 * 109.47131 * 90.00330 * 13 12 9 35 35 H 1.08999 * 109.46688 * 209.99777 * 13 12 9 36 36 H 1.08994 * 109.47755 * 329.99763 * 13 12 9 37 37 H 1.09005 * 109.46734 * 174.97806 * 16 14 12 38 38 H 1.08996 * 109.47055 * 294.98099 * 16 14 12 39 39 H 1.08995 * 109.46926 * 54.98088 * 16 14 12 40 40 H 0.97000 * 119.99915 * 180.02562 * 20 19 17 41 41 H 1.08000 * 119.94014 * 180.02562 * 25 8 7 42 42 H 1.08002 * 120.06570 * 179.97438 * 26 25 8 43 43 H 1.07999 * 126.52364 * 179.97438 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2618 1.0598 0.0000 4 6 3.5560 0.6689 0.0006 5 6 4.7433 1.5591 0.0002 6 6 6.0257 1.0144 0.0068 7 6 7.1264 1.8471 0.0016 8 6 6.9581 3.2201 0.0011 9 16 8.3678 4.2772 0.0020 10 8 9.4392 3.5178 -0.5409 11 8 7.9396 5.5175 -0.5435 12 7 8.7584 4.5722 1.5841 13 6 8.1699 5.7177 2.2824 14 6 9.6922 3.6876 2.2852 15 1 10.0225 2.8988 1.6093 16 6 8.9932 3.0638 3.4948 17 6 10.8851 4.4831 2.7493 18 1 10.7594 5.5055 3.0735 19 6 12.1370 3.9054 2.7600 20 7 13.1614 4.5651 3.2549 21 14 12.3781 2.1857 2.0715 22 1 12.5794 2.2644 0.6023 23 1 13.5698 1.5627 2.7017 24 1 11.1768 1.3629 2.3631 25 6 5.6873 3.7662 -0.0005 26 6 4.5795 2.9430 -0.0007 27 6 3.5688 -0.6864 0.0015 28 8 2.2844 -1.0912 -0.0049 29 1 -0.3633 -0.0002 -1.0277 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3634 0.8899 0.5137 32 1 6.1583 -0.0574 0.0117 33 1 8.1210 1.4260 0.0030 34 1 7.2383 5.4130 2.7594 35 1 8.8655 6.0774 3.0405 36 1 7.9680 6.5149 1.5671 37 1 9.6579 2.3387 3.9644 38 1 8.7426 3.8450 4.2124 39 1 8.0814 2.5633 3.1693 40 1 14.0422 4.1589 3.2621 41 1 5.5616 4.8389 -0.0013 42 1 3.5877 3.3704 -0.0015 43 1 4.4427 -1.3210 0.0018 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096409580.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:06 Heat of formation + Delta-G solvation = -19.116689 kcal Electronic energy + Delta-G solvation = -28514.670156 eV Core-core repulsion = 24461.050955 eV Total energy + Delta-G solvation = -4053.619201 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 350.113 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -43.70897 -39.24241 -36.77702 -36.32531 -35.38216 -35.27140 -33.20833 -32.48159 -31.20670 -30.85223 -29.95690 -27.80274 -25.68905 -25.20568 -24.31669 -23.11210 -21.71366 -21.14586 -20.61080 -18.66813 -17.99950 -17.48490 -17.25447 -17.16226 -16.40772 -16.12208 -15.74472 -15.06090 -14.58376 -14.46160 -14.34232 -14.02942 -13.67992 -13.63272 -13.54135 -13.38092 -13.13085 -12.97563 -12.65927 -12.50885 -12.45890 -11.97609 -11.86281 -11.73680 -11.57570 -11.40097 -11.33767 -11.14319 -10.92681 -10.83587 -10.72426 -10.52717 -10.34914 -9.93635 -9.80536 -9.37929 -9.13351 -8.65692 -8.60849 -8.06534 -6.19135 -4.19203 0.30091 0.92051 1.21423 1.24128 2.29593 2.32399 3.27244 3.33809 3.41885 3.44222 3.45573 3.73399 4.19148 4.28558 4.35944 4.41865 4.53787 4.77961 4.81654 4.87432 4.96359 5.10682 5.15686 5.18938 5.29436 5.40621 5.46987 5.56003 5.65598 5.69584 5.87262 6.05500 6.06959 6.11102 6.14226 6.22591 6.34976 6.39017 6.56130 6.62911 6.70859 6.91647 7.16323 7.29324 7.45435 7.62616 8.40844 8.85543 9.41883 10.92455 Molecular weight = 350.11amu Principal moments of inertia in cm(-1) A = 0.017455 B = 0.002879 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.706653 B = 9721.890031 C =10352.628992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.194 3.806 3 N -0.472 5.472 4 C 0.022 3.978 5 C 0.030 3.970 6 C -0.130 4.130 7 C -0.017 4.017 8 C -0.666 4.666 9 S 2.671 3.329 10 O -0.954 6.954 11 O -0.970 6.970 12 N -0.971 5.971 13 C 0.092 3.908 14 C 0.232 3.768 15 H 0.058 0.942 16 C -0.148 4.148 17 C -0.514 4.514 18 H 0.084 0.916 19 C 0.079 3.921 20 N -0.886 5.886 21 Si 0.865 3.135 22 H -0.263 1.263 23 H -0.286 1.286 24 H -0.263 1.263 25 C -0.020 4.020 26 C -0.113 4.113 27 C -0.052 4.052 28 O -0.200 6.200 29 H 0.094 0.906 30 H 0.089 0.911 31 H 0.102 0.898 32 H 0.130 0.870 33 H 0.144 0.856 34 H 0.039 0.961 35 H 0.088 0.912 36 H 0.068 0.932 37 H 0.055 0.945 38 H 0.054 0.946 39 H 0.025 0.975 40 H 0.267 0.733 41 H 0.143 0.857 42 H 0.138 0.862 43 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.282 -10.363 -4.840 25.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.013 4.013 3 N -0.201 5.201 4 C -0.096 4.096 5 C 0.029 3.971 6 C -0.150 4.150 7 C -0.036 4.036 8 C -0.750 4.750 9 S 2.761 3.239 10 O -0.945 6.945 11 O -0.960 6.960 12 N -0.811 5.811 13 C -0.054 4.054 14 C 0.129 3.871 15 H 0.075 0.925 16 C -0.208 4.208 17 C -0.554 4.554 18 H 0.102 0.898 19 C -0.126 4.126 20 N -0.523 5.523 21 Si 0.691 3.309 22 H -0.187 1.187 23 H -0.212 1.212 24 H -0.188 1.188 25 C -0.039 4.039 26 C -0.133 4.133 27 C -0.123 4.123 28 O -0.086 6.086 29 H 0.112 0.888 30 H 0.108 0.892 31 H 0.121 0.879 32 H 0.148 0.852 33 H 0.162 0.838 34 H 0.057 0.943 35 H 0.106 0.894 36 H 0.087 0.913 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.044 0.956 40 H 0.077 0.923 41 H 0.160 0.840 42 H 0.155 0.845 43 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -22.977 -9.485 -5.556 25.471 hybrid contribution 0.063 -2.081 0.017 2.082 sum -22.914 -11.566 -5.539 26.259 Atomic orbital electron populations 1.20298 0.81010 1.05335 1.04870 1.26344 0.96659 0.78426 0.99920 1.70457 1.01163 1.30062 1.18467 1.20214 0.91281 0.91431 1.06713 1.17959 0.89421 0.92383 0.97355 1.21117 0.91148 1.00023 1.02692 1.20857 0.99713 0.91476 0.91511 1.31623 1.18395 1.09946 1.15045 1.02783 0.73446 0.73606 0.74063 1.93563 1.51221 1.72675 1.76996 1.93501 1.83381 1.41646 1.77478 1.57700 1.55991 1.37137 1.30316 1.21401 0.97649 0.87753 0.98588 1.19173 0.87748 0.89555 0.90589 0.92466 1.22250 0.98358 1.00148 0.99998 1.21132 0.89933 1.01175 1.43198 0.89818 1.24996 0.95725 0.97705 0.94177 1.69879 1.00325 1.38040 1.44040 0.87039 0.78030 0.84900 0.80955 1.18736 1.21212 1.18766 1.20895 0.90535 1.00548 0.91959 1.21285 0.99522 0.92165 1.00281 1.25093 0.84933 0.95844 1.06466 1.84435 1.16788 1.37696 1.69713 0.88756 0.89174 0.87918 0.85168 0.83802 0.94260 0.89368 0.91322 0.92650 0.92687 0.95552 0.92258 0.83956 0.84455 0.76239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.25 10.51 36.01 0.38 0.13 16 2 C 0.19 1.78 8.32 -13.01 -0.11 1.67 16 3 N -0.47 -5.59 11.00 -7.66 -0.08 -5.67 16 4 C 0.02 0.26 6.87 -83.17 -0.57 -0.32 16 5 C 0.03 0.38 5.88 -104.89 -0.62 -0.23 16 6 C -0.13 -1.60 9.57 -39.25 -0.38 -1.97 16 7 C -0.02 -0.24 9.51 -39.63 -0.38 -0.62 16 8 C -0.67 -10.69 5.98 -39.52 -0.24 -10.93 16 9 S 2.67 52.05 5.69 -107.50 -0.61 51.44 16 10 O -0.95 -21.48 15.83 -57.17 -0.91 -22.38 16 11 O -0.97 -19.74 15.87 -57.17 -0.91 -20.65 16 12 N -0.97 -19.46 3.06 -115.86 -0.35 -19.81 16 13 C 0.09 1.57 9.81 59.85 0.59 2.16 16 14 C 0.23 5.24 2.28 -69.09 -0.16 5.08 16 15 H 0.06 1.34 4.06 -51.93 -0.21 1.13 16 16 C -0.15 -2.89 9.10 37.16 0.34 -2.55 16 17 C -0.51 -13.69 8.72 -34.44 -0.30 -13.99 16 18 H 0.08 2.36 6.82 -52.49 -0.36 2.00 16 19 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 20 N -0.89 -26.09 13.96 55.43 0.77 -25.32 16 21 Si 0.86 21.13 26.99 -169.99 -4.59 16.54 16 22 H -0.26 -6.59 7.11 56.52 0.40 -6.19 16 23 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.26 -5.92 6.82 56.52 0.39 -5.53 16 25 C -0.02 -0.29 9.51 -39.63 -0.38 -0.67 16 26 C -0.11 -1.51 9.70 -39.25 -0.38 -1.89 16 27 C -0.05 -0.48 11.57 29.77 0.34 -0.14 16 28 O -0.20 -1.88 10.76 5.58 0.06 -1.82 16 29 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.09 0.22 8.14 -51.92 -0.42 -0.20 16 31 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.13 1.13 7.03 -52.49 -0.37 0.76 16 33 H 0.14 2.05 7.61 -52.48 -0.40 1.65 16 34 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.09 1.59 6.56 -51.93 -0.34 1.25 16 36 H 0.07 1.11 7.02 -51.93 -0.36 0.74 16 37 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.05 1.03 7.84 -51.93 -0.41 0.62 16 39 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 41 H 0.14 1.83 7.61 -52.49 -0.40 1.43 16 42 H 0.14 1.65 7.87 -52.49 -0.41 1.24 16 43 H 0.22 1.22 7.30 -52.49 -0.38 0.83 16 LS Contribution 373.85 15.07 5.63 5.63 Total: -1.00 -34.95 373.85 -8.27 -43.22 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -5.33 Total: 0.99 kcal Atomic # 6 Polarization: -20.22 SS G_CDS: -1.95 Total: -22.17 kcal Atomic # 7 Polarization: -51.14 SS G_CDS: 0.33 Total: -50.80 kcal Atomic # 8 Polarization: -43.09 SS G_CDS: -1.75 Total: -44.85 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.59 Total: 16.54 kcal Atomic # 16 Polarization: 52.05 SS G_CDS: -0.61 Total: 51.44 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.95 -8.27 -43.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096409580.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.098 kcal (2) G-P(sol) polarization free energy of solvation -34.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds