Wall clock time and date at job start Tue Mar 31 2020 06:40:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38240 * 119.99480 * 2 1 4 4 C 1.38234 * 119.99852 * 179.97438 * 3 2 1 5 5 C 1.38235 * 120.00115 * 0.02562 * 4 3 2 6 6 C 1.50700 * 120.00390 * 179.97438 * 5 4 3 7 7 H 1.08995 * 109.58703 * 213.05720 * 6 5 4 8 8 C 1.53193 * 109.70161 * 333.41640 * 6 5 4 9 9 C 1.53039 * 109.31191 * 174.48830 * 8 6 5 10 10 C 1.53047 * 109.54040 * 298.63487 * 9 8 6 11 11 C 1.53196 * 109.30943 * 61.36285 * 10 9 8 12 12 N 1.46921 * 108.77468 * 305.36619 * 11 10 9 13 13 S 1.65602 * 120.62559 * 233.88225 * 12 11 10 14 14 O 1.42091 * 104.27852 * 17.05371 * 13 12 11 15 15 O 1.42101 * 104.27606 * 144.91294 * 13 12 11 16 16 C 1.81405 * 104.45119 * 260.97928 * 13 12 11 17 17 C 1.52998 * 109.47357 * 179.97438 * 16 13 12 18 18 C 1.52998 * 109.47318 * 180.02562 * 17 16 13 19 19 C 1.50694 * 109.46973 * 180.02562 * 18 17 16 20 20 H 1.08000 * 120.00699 * 0.02562 * 19 18 17 21 21 C 1.37879 * 119.99940 * 180.02562 * 19 18 17 22 22 N 1.31511 * 119.99971 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00322 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46953 * 89.99979 * 23 21 19 25 25 H 1.48496 * 109.47427 * 210.00151 * 23 21 19 26 26 H 1.48505 * 109.46880 * 330.00185 * 23 21 19 27 27 C 1.38241 * 119.99829 * 0.25514 * 5 4 3 28 28 C 1.38231 * 119.99947 * 359.46864 * 27 5 4 29 29 H 1.08999 * 109.47025 * 90.00293 * 1 2 3 30 30 H 1.09006 * 109.46195 * 209.99895 * 1 2 3 31 31 H 1.08993 * 109.46843 * 329.99649 * 1 2 3 32 32 H 1.07996 * 120.00116 * 359.97438 * 3 2 1 33 33 H 1.08001 * 120.00534 * 179.97438 * 4 3 2 34 34 H 1.08996 * 109.49624 * 294.43642 * 8 6 5 35 35 H 1.08998 * 109.49752 * 54.54351 * 8 6 5 36 36 H 1.09006 * 109.46199 * 58.65143 * 9 8 6 37 37 H 1.08999 * 109.46352 * 178.61240 * 9 8 6 38 38 H 1.08995 * 109.49931 * 181.31356 * 10 9 8 39 39 H 1.08998 * 109.49303 * 301.37962 * 10 9 8 40 40 H 1.08998 * 109.58148 * 185.57773 * 11 10 9 41 41 H 1.08998 * 109.58713 * 65.15628 * 11 10 9 42 42 H 1.08998 * 109.47391 * 300.00389 * 16 13 12 43 43 H 1.09005 * 109.46863 * 60.00374 * 16 13 12 44 44 H 1.08998 * 109.47219 * 300.00533 * 17 16 13 45 45 H 1.09005 * 109.46797 * 60.00373 * 17 16 13 46 46 H 1.08998 * 109.47351 * 300.00379 * 18 17 16 47 47 H 1.09000 * 109.46501 * 60.00502 * 18 17 16 48 48 H 0.97002 * 120.00173 * 179.97438 * 22 21 19 49 49 H 1.08001 * 119.99616 * 179.73335 * 27 5 4 50 50 H 1.08004 * 120.00365 * 180.29685 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1973 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2717 0.0003 0.0005 6 6 5.7788 0.0003 0.0005 7 1 6.1442 -0.8604 -0.5596 8 6 6.2952 1.2901 -0.6449 9 6 7.8192 1.3449 -0.5172 10 6 8.2089 1.3558 0.9628 11 6 7.7140 0.0667 1.6264 12 7 6.2713 -0.0666 1.3832 13 16 5.2195 -0.2816 2.6441 14 8 5.9617 0.1109 3.7904 15 8 4.0513 0.4252 2.2504 16 6 4.9039 -2.0678 2.6709 17 6 3.9342 -2.3974 3.8075 18 6 3.6685 -3.9040 3.8305 19 6 2.7130 -4.2285 4.9497 20 1 2.3328 -3.4392 5.5812 21 6 2.3240 -5.5332 5.1675 22 7 2.7873 -6.4945 4.3989 23 14 1.1400 -5.9357 6.5552 24 1 -0.2552 -5.8654 6.0515 25 1 1.4158 -7.3048 7.0598 26 1 1.3183 -4.9566 7.6575 27 6 3.5806 -1.1970 -0.0053 28 6 2.1983 -1.1971 -0.0001 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3632 -0.8901 0.5139 31 1 -0.3633 0.8899 0.5139 32 1 1.6581 2.1325 -0.0004 33 1 4.1205 2.1326 0.0001 34 1 6.0176 1.3059 -1.6988 35 1 5.8567 2.1506 -0.1396 36 1 8.2559 0.4712 -1.0011 37 1 8.1916 2.2498 -0.9974 38 1 9.2933 1.4183 1.0531 39 1 7.7527 2.2160 1.4527 40 1 7.9010 0.1131 2.6993 41 1 8.2373 -0.7885 1.1989 42 1 4.4674 -2.3740 1.7202 43 1 5.8420 -2.6002 2.8283 44 1 4.3711 -2.0913 4.7581 45 1 2.9960 -1.8650 3.6506 46 1 3.2319 -4.2105 2.8800 47 1 4.6068 -4.4359 3.9877 48 1 2.5139 -7.4125 4.5524 49 1 4.1207 -2.1322 -0.0097 50 1 1.6583 -2.1324 0.0002 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096428243.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:27 Heat of formation + Delta-G solvation = -53.933555 kcal Electronic energy + Delta-G solvation = -30743.387968 eV Core-core repulsion = 26862.206522 eV Total energy + Delta-G solvation = -3881.181446 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 351.166 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -40.03023 -38.12031 -36.74421 -35.55720 -34.63391 -33.55004 -32.54221 -32.17091 -30.82078 -30.41008 -27.74373 -26.70013 -24.49300 -23.56396 -23.51254 -22.47021 -20.77324 -20.69547 -20.20305 -18.53271 -17.50408 -16.58438 -16.24636 -15.94981 -15.68269 -15.35089 -14.96158 -14.82507 -14.51702 -14.46948 -14.25438 -14.01833 -13.69083 -13.57310 -13.37931 -13.13434 -12.60849 -12.52196 -12.41099 -12.22847 -12.04742 -11.84864 -11.79761 -11.66002 -11.44370 -11.41835 -11.17452 -11.13532 -11.02886 -10.90308 -10.80837 -10.70084 -10.58053 -10.46661 -10.36508 -9.89927 -9.45203 -9.19285 -8.85205 -8.56618 -8.39076 -8.14881 -6.04109 -4.06765 0.57670 1.44911 1.71499 2.87124 3.30812 3.36918 3.41277 3.96312 4.13076 4.31569 4.43784 4.44432 4.57922 4.67978 4.85904 4.91535 5.02373 5.06868 5.15636 5.19939 5.20894 5.30143 5.32585 5.33387 5.45638 5.51486 5.55810 5.59571 5.64922 5.70280 5.74022 5.79603 5.83713 5.94350 5.96766 5.98611 6.08530 6.15603 6.28049 6.31551 6.32933 6.51813 6.59146 6.64780 6.73012 6.84942 6.92172 7.26651 7.59623 7.70442 7.94280 8.35497 8.99384 9.57673 11.07110 Molecular weight = 351.17amu Principal moments of inertia in cm(-1) A = 0.011229 B = 0.003723 C = 0.003063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2492.887282 B = 7518.265865 C = 9140.549140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.074 4.074 3 C -0.115 4.115 4 C -0.043 4.043 5 C -0.115 4.115 6 C 0.201 3.799 7 H 0.081 0.919 8 C -0.127 4.127 9 C -0.117 4.117 10 C -0.131 4.131 11 C 0.114 3.886 12 N -0.998 5.998 13 S 2.590 3.410 14 O -0.970 6.970 15 O -0.937 6.937 16 C -0.616 4.616 17 C -0.100 4.100 18 C 0.033 3.967 19 C -0.524 4.524 20 H 0.057 0.943 21 C 0.058 3.942 22 N -0.895 5.895 23 Si 0.892 3.108 24 H -0.280 1.280 25 H -0.286 1.286 26 H -0.273 1.273 27 C -0.121 4.121 28 C -0.112 4.112 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.114 0.886 33 H 0.116 0.884 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.073 0.927 39 H 0.066 0.934 40 H 0.097 0.903 41 H 0.067 0.933 42 H 0.130 0.870 43 H 0.122 0.878 44 H 0.061 0.939 45 H 0.064 0.936 46 H 0.020 0.980 47 H 0.019 0.981 48 H 0.261 0.739 49 H 0.122 0.878 50 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.305 16.075 -14.886 23.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.075 4.075 3 C -0.134 4.134 4 C -0.062 4.062 5 C -0.116 4.116 6 C 0.096 3.904 7 H 0.099 0.901 8 C -0.166 4.166 9 C -0.155 4.155 10 C -0.171 4.171 11 C -0.011 4.011 12 N -0.835 5.835 13 S 2.689 3.311 14 O -0.961 6.961 15 O -0.927 6.927 16 C -0.747 4.747 17 C -0.140 4.140 18 C -0.005 4.005 19 C -0.563 4.563 20 H 0.075 0.925 21 C -0.143 4.143 22 N -0.535 5.535 23 Si 0.720 3.280 24 H -0.206 1.206 25 H -0.212 1.212 26 H -0.197 1.197 27 C -0.140 4.140 28 C -0.131 4.131 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.132 0.868 33 H 0.134 0.866 34 H 0.093 0.907 35 H 0.092 0.908 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.091 0.909 39 H 0.085 0.915 40 H 0.115 0.885 41 H 0.085 0.915 42 H 0.148 0.852 43 H 0.140 0.860 44 H 0.079 0.921 45 H 0.083 0.917 46 H 0.038 0.962 47 H 0.037 0.963 48 H 0.071 0.929 49 H 0.139 0.861 50 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 7.012 16.588 -14.331 23.015 hybrid contribution -0.434 -1.114 0.581 1.329 sum 6.578 15.474 -13.750 21.721 Atomic orbital electron populations 1.20809 0.91685 1.02972 1.01798 1.19855 0.95691 0.93323 0.98586 1.20829 0.94085 0.97062 1.01401 1.20662 0.93873 0.96683 0.94997 1.19673 0.93451 0.94531 1.03977 1.19712 0.89642 0.98777 0.82288 0.90070 1.21996 0.95939 0.97855 1.00840 1.21493 0.95600 1.02024 0.96357 1.21861 1.00862 0.98277 0.96053 1.21465 0.79661 0.97819 1.02143 1.58002 1.17862 1.88452 1.19157 1.05698 0.74037 0.78718 0.72660 1.93514 1.71808 1.81797 1.48977 1.93739 1.48696 1.69806 1.80418 1.30778 1.09979 1.24059 1.09918 1.21424 0.95766 1.03491 0.93276 1.19034 0.96992 0.87076 0.97439 1.21254 1.26981 0.92957 1.15068 0.92473 1.25004 0.96436 0.96410 0.96447 1.69957 1.44392 1.00257 1.38847 0.86584 0.81282 0.77671 0.82456 1.20573 1.21168 1.19748 1.21009 0.94948 0.96723 1.01310 1.20902 0.93845 0.97643 1.00662 0.91563 0.91315 0.91748 0.86765 0.86566 0.90683 0.90839 0.91734 0.91769 0.90870 0.91478 0.88471 0.91489 0.85200 0.85990 0.92058 0.91744 0.96182 0.96281 0.92945 0.86050 0.86009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.29 10.01 36.01 0.36 -0.93 16 2 C -0.07 -1.00 5.88 -104.62 -0.62 -1.62 16 3 C -0.12 -1.51 9.61 -39.58 -0.38 -1.89 16 4 C -0.04 -0.56 6.97 -39.58 -0.28 -0.83 16 5 C -0.11 -1.45 2.85 -104.62 -0.30 -1.75 16 6 C 0.20 2.15 3.14 -68.75 -0.22 1.93 16 7 H 0.08 0.75 8.11 -51.93 -0.42 0.33 16 8 C -0.13 -1.11 4.77 -26.61 -0.13 -1.24 16 9 C -0.12 -0.88 5.88 -26.69 -0.16 -1.03 16 10 C -0.13 -1.12 6.08 -26.61 -0.16 -1.28 16 11 C 0.11 1.18 6.47 -3.71 -0.02 1.15 16 12 N -1.00 -12.14 3.21 -107.70 -0.35 -12.49 16 13 S 2.59 41.29 4.88 -107.50 -0.52 40.76 16 14 O -0.97 -18.20 16.36 -57.54 -0.94 -19.14 16 15 O -0.94 -16.22 12.51 -57.54 -0.72 -16.94 16 16 C -0.62 -10.32 5.97 37.16 0.22 -10.10 16 17 C -0.10 -2.12 5.16 -26.73 -0.14 -2.26 16 18 C 0.03 0.85 4.97 -27.89 -0.14 0.71 16 19 C -0.52 -14.95 9.11 -34.44 -0.31 -15.26 16 20 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 21 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 22 N -0.90 -26.69 13.29 55.43 0.74 -25.96 16 23 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 24 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 25 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 26 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 27 C -0.12 -1.64 7.13 -39.58 -0.28 -1.92 16 28 C -0.11 -1.59 9.70 -39.58 -0.38 -1.97 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.07 0.78 8.09 -51.93 -0.42 0.36 16 31 H 0.06 0.66 8.08 -51.93 -0.42 0.24 16 32 H 0.11 1.26 8.06 -52.49 -0.42 0.84 16 33 H 0.12 1.31 5.97 -52.49 -0.31 1.00 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.69 6.23 -51.93 -0.32 0.36 16 36 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.10 1.11 6.65 -51.93 -0.35 0.77 16 41 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.13 2.01 4.75 -51.93 -0.25 1.76 16 43 H 0.12 1.87 8.14 -51.92 -0.42 1.44 16 44 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 45 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 46 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 48 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 49 H 0.12 1.48 6.71 -52.49 -0.35 1.12 16 50 H 0.12 1.63 8.06 -52.48 -0.42 1.21 16 LS Contribution 394.74 15.07 5.95 5.95 Total: -1.00 -34.13 394.74 -12.20 -46.33 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: -8.30 Total: 1.47 kcal Atomic # 6 Polarization: -33.67 SS G_CDS: -3.03 Total: -36.70 kcal Atomic # 7 Polarization: -38.84 SS G_CDS: 0.39 Total: -38.45 kcal Atomic # 8 Polarization: -34.42 SS G_CDS: -1.66 Total: -36.08 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Atomic # 16 Polarization: 41.29 SS G_CDS: -0.52 Total: 40.76 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -34.13 -12.20 -46.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096428243.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.605 kcal (2) G-P(sol) polarization free energy of solvation -34.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds