Wall clock time and date at job start Tue Mar 31 2020 06:45:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.49539 * 2 1 4 4 C 1.53190 * 109.49920 * 239.93864 * 2 1 3 5 5 N 1.46998 * 108.73528 * 294.65292 * 4 2 1 6 6 S 1.65594 * 120.61562 * 126.38721 * 5 4 2 7 7 O 1.42100 * 104.27975 * 26.09486 * 6 5 4 8 8 O 1.42103 * 104.27733 * 153.95152 * 6 5 4 9 9 C 1.81397 * 104.45067 * 270.02337 * 6 5 4 10 10 C 1.53001 * 109.47176 * 179.97438 * 9 6 5 11 11 C 1.52998 * 109.47019 * 179.97438 * 10 9 6 12 12 C 1.50707 * 109.46852 * 180.02562 * 11 10 9 13 13 H 1.07994 * 120.00494 * 0.02562 * 12 11 10 14 14 C 1.37883 * 119.99696 * 180.02562 * 12 11 10 15 15 N 1.31513 * 119.99842 * 180.02562 * 14 12 11 16 16 Si 1.86796 * 120.00240 * 0.02562 * 14 12 11 17 17 H 1.48502 * 109.47315 * 89.99713 * 16 14 12 18 18 H 1.48496 * 109.47089 * 209.99960 * 16 14 12 19 19 H 1.48507 * 109.46714 * 329.99965 * 16 14 12 20 20 C 1.46925 * 118.75666 * 306.41077 * 5 4 2 21 21 C 1.53194 * 108.77380 * 53.60460 * 20 5 4 22 22 C 1.53031 * 109.31567 * 305.36551 * 21 20 5 23 23 H 1.08996 * 109.46639 * 301.34386 * 22 21 20 24 24 C 1.50702 * 109.46264 * 181.38518 * 22 21 20 25 25 C 1.38234 * 120.00103 * 136.05285 * 24 22 21 26 26 C 1.38235 * 119.99642 * 179.78955 * 25 24 22 27 27 C 1.38232 * 120.00258 * 0.46155 * 26 25 24 28 28 C 1.38234 * 119.99948 * 359.77020 * 27 26 25 29 29 C 1.38232 * 119.99772 * 316.32528 * 24 22 21 30 30 H 1.09001 * 109.47432 * 306.36024 * 1 2 3 31 31 H 1.09001 * 109.47154 * 186.35665 * 1 2 3 32 32 H 1.09006 * 109.47208 * 66.35737 * 1 2 3 33 33 H 1.09000 * 109.59022 * 54.46875 * 4 2 1 34 34 H 1.08997 * 109.58615 * 174.89971 * 4 2 1 35 35 H 1.08998 * 109.47162 * 299.99749 * 9 6 5 36 36 H 1.09000 * 109.47219 * 60.00276 * 9 6 5 37 37 H 1.08999 * 109.47621 * 300.00358 * 10 9 6 38 38 H 1.09004 * 109.47602 * 60.00034 * 10 9 6 39 39 H 1.08998 * 109.47305 * 299.99861 * 11 10 9 40 40 H 1.09000 * 109.47233 * 60.00485 * 11 10 9 41 41 H 0.97003 * 120.00569 * 180.02562 * 15 14 12 42 42 H 1.09001 * 109.58632 * 293.82546 * 20 5 4 43 43 H 1.08997 * 109.70824 * 173.46379 * 20 5 4 44 44 H 1.09008 * 109.49586 * 185.41190 * 21 20 5 45 45 H 1.08999 * 109.49530 * 65.32329 * 21 20 5 46 46 H 1.07998 * 119.99857 * 0.02562 * 25 24 22 47 47 H 1.07999 * 119.99934 * 180.25422 * 26 25 24 48 48 H 1.07998 * 120.00096 * 179.79179 * 27 26 25 49 49 H 1.08002 * 119.99684 * 179.97438 * 28 27 26 50 50 H 1.08006 * 120.00717 * 359.97438 * 29 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0413 -0.7234 -1.2498 5 7 1.6516 -2.1384 -1.1690 6 16 0.8191 -2.8559 -2.4077 7 8 1.1796 -2.1006 -3.5560 8 8 1.1525 -4.2333 -2.3024 9 6 -0.9268 -2.5902 -1.9934 10 6 -1.8088 -3.2148 -3.0764 11 6 -3.2814 -2.9913 -2.7266 12 6 -4.1501 -3.6071 -3.7931 13 1 -3.6972 -4.1082 -4.6358 14 6 -5.5231 -3.5307 -3.6929 15 7 -6.2812 -4.0686 -4.6232 16 14 -6.3065 -2.6634 -2.2357 17 1 -6.4988 -1.2269 -2.5595 18 1 -7.6224 -3.2844 -1.9390 19 1 -5.4210 -2.7894 -1.0502 20 6 2.0140 -2.9040 0.0316 21 6 1.5030 -2.1553 1.2666 22 6 2.0408 -0.7227 1.2486 23 1 3.1305 -0.7440 1.2356 24 6 1.5679 0.0067 2.4796 25 6 2.4467 0.7998 3.1934 26 6 2.0117 1.4723 4.3201 27 6 0.7005 1.3440 4.7385 28 6 -0.1771 0.5470 4.0274 29 6 0.2568 -0.1220 2.8982 30 1 -0.3634 0.6093 0.8276 31 1 -0.3633 -1.0213 0.1138 32 1 -0.3634 0.4121 -0.9414 33 1 1.6008 -0.2724 -2.1390 34 1 3.1274 -0.6459 -1.2981 35 1 -1.1470 -3.0549 -1.0323 36 1 -1.1275 -1.5205 -1.9342 37 1 -1.5886 -2.7499 -4.0373 38 1 -1.6083 -4.2846 -3.1361 39 1 -3.5013 -3.4566 -1.7658 40 1 -3.4823 -1.9216 -2.6667 41 1 -7.2472 -4.0146 -4.5531 42 1 3.0979 -3.0041 0.0876 43 1 1.5573 -3.8927 -0.0112 44 1 1.8480 -2.6622 2.1679 45 1 0.4133 -2.1351 1.2547 46 1 3.4721 0.8971 2.8686 47 1 2.6972 2.0953 4.8754 48 1 0.3616 1.8668 5.6206 49 1 -1.2014 0.4465 4.3546 50 1 -0.4289 -0.7449 2.3429 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096428472.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:14 Heat of formation + Delta-G solvation = -63.333025 kcal Electronic energy + Delta-G solvation = -29873.661702 eV Core-core repulsion = 25992.072664 eV Total energy + Delta-G solvation = -3881.589038 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 351.166 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -40.54544 -38.43583 -37.04047 -35.82312 -34.84207 -34.09835 -32.32089 -32.18511 -31.28044 -30.03592 -28.44912 -27.26920 -24.99541 -23.77405 -23.41664 -22.35991 -21.69384 -20.47192 -19.64775 -18.56861 -17.79159 -17.06553 -16.91823 -16.18974 -16.00469 -15.59443 -15.42769 -15.09588 -14.96586 -14.83846 -14.22221 -14.19871 -13.96561 -13.74010 -13.48581 -13.26034 -12.93902 -12.72513 -12.48610 -12.36971 -12.21822 -12.18840 -12.07593 -11.90358 -11.69712 -11.65973 -11.56488 -11.41271 -11.23874 -11.08127 -10.97702 -10.95390 -10.84504 -10.44770 -10.09213 -9.88556 -9.71056 -9.29049 -9.18176 -9.01285 -8.94136 -8.59719 -6.09304 -4.08523 0.35923 1.07348 1.12161 2.65970 3.25356 3.32968 3.34720 3.48904 3.93523 4.19094 4.22013 4.28629 4.39228 4.54853 4.61351 4.71668 4.77601 4.80843 4.83754 4.93306 4.97920 5.05548 5.07540 5.16661 5.21239 5.24442 5.30535 5.38341 5.47619 5.50482 5.50647 5.60553 5.67233 5.72738 5.74104 5.78290 5.85153 5.87975 6.02862 6.10813 6.12637 6.20109 6.25225 6.26437 6.38253 6.45014 6.66197 6.72697 7.11647 7.25768 7.70216 8.46843 8.95308 9.51809 11.04041 Molecular weight = 351.17amu Principal moments of inertia in cm(-1) A = 0.010276 B = 0.003209 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2724.172233 B = 8723.637055 C =10829.848351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.096 4.096 3 H 0.083 0.917 4 C 0.127 3.873 5 N -1.002 6.002 6 S 2.599 3.401 7 O -0.957 6.957 8 O -0.958 6.958 9 C -0.619 4.619 10 C -0.097 4.097 11 C -0.003 4.003 12 C -0.527 4.527 13 H 0.074 0.926 14 C 0.068 3.932 15 N -0.900 5.900 16 Si 0.880 3.120 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.266 1.266 20 C 0.122 3.878 21 C -0.134 4.134 22 C -0.040 4.040 23 H 0.081 0.919 24 C -0.072 4.072 25 C -0.118 4.118 26 C -0.121 4.121 27 C -0.126 4.126 28 C -0.120 4.120 29 C -0.114 4.114 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.059 0.941 33 H 0.094 0.906 34 H 0.072 0.928 35 H 0.126 0.874 36 H 0.128 0.872 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.019 0.981 40 H 0.015 0.985 41 H 0.264 0.736 42 H 0.072 0.928 43 H 0.093 0.907 44 H 0.076 0.924 45 H 0.076 0.924 46 H 0.119 0.881 47 H 0.119 0.881 48 H 0.118 0.882 49 H 0.120 0.880 50 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.799 11.254 19.236 29.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.116 4.116 3 H 0.101 0.899 4 C 0.001 3.999 5 N -0.838 5.838 6 S 2.695 3.305 7 O -0.948 6.948 8 O -0.948 6.948 9 C -0.750 4.750 10 C -0.136 4.136 11 C -0.042 4.042 12 C -0.565 4.565 13 H 0.093 0.907 14 C -0.134 4.134 15 N -0.539 5.539 16 Si 0.707 3.293 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.191 1.191 20 C -0.003 4.003 21 C -0.173 4.173 22 C -0.059 4.059 23 H 0.099 0.901 24 C -0.072 4.072 25 C -0.136 4.136 26 C -0.139 4.139 27 C -0.144 4.144 28 C -0.138 4.138 29 C -0.131 4.131 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.112 0.888 34 H 0.090 0.910 35 H 0.145 0.855 36 H 0.146 0.854 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.038 0.962 40 H 0.033 0.967 41 H 0.074 0.926 42 H 0.090 0.910 43 H 0.111 0.889 44 H 0.095 0.905 45 H 0.094 0.906 46 H 0.137 0.863 47 H 0.137 0.863 48 H 0.136 0.864 49 H 0.138 0.862 50 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 20.052 10.772 18.432 29.289 hybrid contribution -1.131 0.836 1.311 1.922 sum 18.921 11.608 19.743 29.708 Atomic orbital electron populations 1.22260 0.94844 1.02715 1.02610 1.21481 0.96797 0.99392 0.93924 0.89887 1.21483 1.00546 0.79624 0.98226 1.57878 1.71502 1.19858 1.34594 1.05432 0.77405 0.74029 0.73599 1.93567 1.81943 1.72242 1.47024 1.93569 1.82597 1.32757 1.85895 1.30747 1.22724 1.11046 1.10487 1.21302 0.97478 1.00062 0.94745 1.19516 0.90298 0.96734 0.97619 1.21139 0.90883 1.36435 1.08021 0.90744 1.25025 0.97299 0.95066 0.96012 1.69909 1.04871 1.45127 1.33978 0.86782 0.78795 0.80037 0.83682 1.20222 1.21271 1.19062 1.21389 1.01051 0.94600 0.83275 1.22128 1.01995 0.94967 0.98200 1.20116 1.00282 0.94030 0.91463 0.90082 1.19846 0.93808 0.97415 0.96155 1.21048 0.99413 0.97505 0.95639 1.21118 0.96036 0.99743 0.97009 1.21143 0.93915 0.99356 1.00035 1.21196 0.99733 0.97300 0.95576 1.21205 0.95651 0.99792 0.96499 0.91571 0.91712 0.92197 0.88794 0.90988 0.85517 0.85364 0.91083 0.91070 0.96230 0.96658 0.92623 0.91016 0.88850 0.90495 0.90579 0.86261 0.86328 0.86382 0.86161 0.85608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.44 6.85 37.16 0.25 -1.18 16 2 C -0.10 -0.73 2.71 -90.50 -0.24 -0.97 16 3 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 4 C 0.13 1.12 5.71 -3.67 -0.02 1.10 16 5 N -1.00 -10.41 2.77 -113.47 -0.31 -10.73 16 6 S 2.60 37.10 5.41 -107.50 -0.58 36.51 16 7 O -0.96 -16.29 16.73 -57.54 -0.96 -17.26 16 8 O -0.96 -16.29 16.73 -57.54 -0.96 -17.26 16 9 C -0.62 -8.83 5.39 37.16 0.20 -8.63 16 10 C -0.10 -1.87 5.16 -26.73 -0.14 -2.00 16 11 C 0.00 -0.07 4.04 -27.88 -0.11 -0.18 16 12 C -0.53 -14.94 9.66 -34.43 -0.33 -15.27 16 13 H 0.07 2.27 7.99 -52.49 -0.42 1.85 16 14 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 15 N -0.90 -27.67 13.96 55.43 0.77 -26.90 16 16 Si 0.88 21.32 27.47 -169.99 -4.67 16.65 16 17 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 18 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 19 H -0.27 -6.10 6.54 56.52 0.37 -5.73 16 20 C 0.12 1.06 6.31 -3.71 -0.02 1.03 16 21 C -0.13 -0.98 4.59 -26.61 -0.12 -1.10 16 22 C -0.04 -0.29 2.19 -91.73 -0.20 -0.49 16 23 H 0.08 0.51 7.96 -51.93 -0.41 0.10 16 24 C -0.07 -0.56 4.67 -104.62 -0.49 -1.05 16 25 C -0.12 -0.87 9.67 -39.58 -0.38 -1.26 16 26 C -0.12 -0.88 10.05 -39.58 -0.40 -1.28 16 27 C -0.13 -0.95 10.05 -39.58 -0.40 -1.35 16 28 C -0.12 -0.97 10.05 -39.58 -0.40 -1.37 16 29 C -0.11 -0.94 7.02 -39.58 -0.28 -1.22 16 30 H 0.07 0.56 5.90 -51.93 -0.31 0.25 16 31 H 0.06 0.56 4.59 -51.93 -0.24 0.32 16 32 H 0.06 0.52 7.91 -51.93 -0.41 0.11 16 33 H 0.09 0.88 7.10 -51.93 -0.37 0.52 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.13 1.55 8.14 -51.93 -0.42 1.13 16 36 H 0.13 1.60 6.98 -51.92 -0.36 1.24 16 37 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 38 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 39 H 0.02 0.44 7.20 -51.93 -0.37 0.07 16 40 H 0.02 0.34 7.57 -51.93 -0.39 -0.05 16 41 H 0.26 7.56 8.31 -40.82 -0.34 7.23 16 42 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.09 0.85 7.10 -51.93 -0.37 0.48 16 44 H 0.08 0.50 8.14 -51.92 -0.42 0.08 16 45 H 0.08 0.58 4.87 -51.93 -0.25 0.32 16 46 H 0.12 0.70 8.01 -52.49 -0.42 0.28 16 47 H 0.12 0.64 8.06 -52.49 -0.42 0.22 16 48 H 0.12 0.69 8.06 -52.49 -0.42 0.26 16 49 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 50 H 0.13 1.00 5.50 -52.48 -0.29 0.71 16 LS Contribution 391.55 15.07 5.90 5.90 Total: -1.00 -35.01 391.55 -12.01 -47.02 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: -8.01 Total: -0.59 kcal Atomic # 6 Polarization: -30.18 SS G_CDS: -3.18 Total: -33.37 kcal Atomic # 7 Polarization: -38.08 SS G_CDS: 0.46 Total: -37.62 kcal Atomic # 8 Polarization: -32.59 SS G_CDS: -1.92 Total: -34.51 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -4.67 Total: 16.65 kcal Atomic # 16 Polarization: 37.10 SS G_CDS: -0.58 Total: 36.51 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -35.01 -12.01 -47.02 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096428472.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.313 kcal (2) G-P(sol) polarization free energy of solvation -35.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds