Wall clock time and date at job start Tue Mar 31 2020 06:40:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31504 * 1 3 3 Si 1.86804 * 120.00278 * 2 1 4 4 H 1.48499 * 109.47239 * 240.00476 * 3 2 1 5 5 H 1.48503 * 109.46599 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47068 * 120.00214 * 3 2 1 7 7 C 1.37884 * 120.00143 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00155 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99565 * 359.97438 * 7 2 1 10 10 N 1.46503 * 109.46684 * 180.02562 * 9 7 2 11 11 C 1.46505 * 120.00095 * 269.99724 * 10 9 7 12 12 C 1.50700 * 109.47335 * 270.00608 * 11 10 9 13 13 C 1.38678 * 120.41593 * 269.72182 * 12 11 10 14 14 C 1.38622 * 118.41753 * 179.78448 * 13 12 11 15 15 C 1.38224 * 119.16568 * 0.50821 * 14 13 12 16 16 N 1.31861 * 120.75985 * 359.73034 * 15 14 13 17 17 C 1.31883 * 121.72478 * 359.97438 * 16 15 14 18 18 C 1.34780 * 119.99865 * 90.00156 * 10 9 7 19 19 O 1.21589 * 119.99856 * 179.97438 * 18 10 9 20 20 N 1.34769 * 119.99924 * 0.27385 * 18 10 9 21 21 C 1.39945 * 119.99972 * 175.02670 * 20 18 10 22 22 C 1.38880 * 120.10545 * 35.08072 * 21 20 18 23 23 C 1.37978 * 119.86080 * 179.97438 * 22 21 20 24 24 C 1.38565 * 120.31231 * 359.97438 * 23 22 21 25 25 C 1.38277 * 119.95949 * 0.02562 * 24 23 22 26 26 C 1.38392 * 119.91792 * 359.73439 * 25 24 23 27 27 C 1.51375 * 109.75575 * 179.97438 * 25 24 23 28 28 C 1.54338 * 105.17027 * 342.79032 * 27 25 24 29 29 C 1.51392 * 130.30536 * 179.97438 * 24 23 22 30 30 H 0.97006 * 120.00054 * 359.97438 * 1 2 3 31 31 H 1.09002 * 109.47275 * 60.00641 * 9 7 2 32 32 H 1.08998 * 109.47003 * 299.99995 * 9 7 2 33 33 H 1.08997 * 109.46597 * 30.00375 * 11 10 9 34 34 H 1.09000 * 109.46907 * 150.00345 * 11 10 9 35 35 H 1.08001 * 120.78851 * 0.02562 * 13 12 11 36 36 H 1.08000 * 120.41705 * 180.21791 * 14 13 12 37 37 H 1.07993 * 119.62462 * 179.74659 * 15 14 13 38 38 H 1.08004 * 119.61571 * 180.02562 * 17 16 15 39 39 H 0.96999 * 120.00037 * 355.02799 * 20 18 10 40 40 H 1.07993 * 120.07309 * 359.97438 * 22 21 20 41 41 H 1.08000 * 119.84164 * 179.97438 * 23 22 21 42 42 H 1.08003 * 119.91603 * 180.25987 * 26 25 24 43 43 H 1.09006 * 110.30555 * 223.86972 * 27 25 24 44 44 H 1.09001 * 110.39130 * 101.75927 * 27 25 24 45 45 H 1.08994 * 110.82565 * 268.15340 * 28 27 25 46 46 H 1.08999 * 110.99489 * 144.67789 * 28 27 25 47 47 H 1.08997 * 110.30532 * 316.13951 * 29 24 23 48 48 H 1.09002 * 110.29697 * 78.28613 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 2.6790 -4.1695 -1.2693 12 6 1.7622 -5.2837 -1.7044 13 6 2.0113 -6.5908 -1.3138 14 6 1.1387 -7.5825 -1.7340 15 6 0.0629 -7.2397 -2.5314 16 7 -0.1402 -5.9864 -2.8876 17 6 0.6658 -5.0165 -2.5017 18 6 2.6409 -4.1249 1.1667 19 8 3.4306 -5.0494 1.1667 20 7 2.1987 -3.6164 2.3338 21 6 2.5712 -4.2138 3.5433 22 6 3.8350 -4.7720 3.6843 23 6 4.1972 -5.3593 4.8792 24 6 3.3060 -5.3944 5.9396 25 6 2.0470 -4.8394 5.8022 26 6 1.6814 -4.2450 4.6071 27 6 1.2710 -5.0058 7.0912 28 6 2.0236 -6.1002 7.8773 29 6 3.4611 -5.9718 7.3305 30 1 -0.4850 0.8401 0.0004 31 1 0.6240 -2.5568 -0.8904 32 1 0.6246 -2.5571 0.8897 33 1 2.6867 -3.3878 -2.0289 34 1 3.6884 -4.5595 -1.1389 35 1 2.8627 -6.8298 -0.6938 36 1 1.3000 -8.6108 -1.4459 37 1 -0.6192 -8.0069 -2.8664 38 1 0.4670 -4.0016 -2.8132 39 1 1.6222 -2.8363 2.3355 40 1 4.5329 -4.7465 2.8605 41 1 5.1799 -5.7937 4.9883 42 1 0.6995 -3.8078 4.5012 43 1 0.2507 -5.3261 6.8799 44 1 1.2648 -4.0724 7.6540 45 1 1.6129 -7.0859 7.6591 46 1 1.9972 -5.8997 8.9484 47 1 3.9361 -6.9517 7.2824 48 1 4.0456 -5.2977 7.9567 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096459862.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:02 Heat of formation + Delta-G solvation = 32.431126 kcal Electronic energy + Delta-G solvation = -30422.248819 eV Core-core repulsion = 26441.661227 eV Total energy + Delta-G solvation = -3980.587593 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 351.169 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.48455 -39.91371 -39.14157 -36.29243 -35.10688 -33.64756 -32.90337 -32.09078 -31.31917 -30.86556 -28.17217 -27.64532 -27.11286 -25.64349 -23.45297 -22.94663 -22.54686 -22.14659 -20.84616 -20.72856 -19.03814 -17.71702 -16.97196 -16.67751 -16.45275 -15.93469 -15.72701 -15.50698 -15.26438 -15.00850 -14.81616 -14.54968 -14.19542 -13.66743 -13.32432 -13.19484 -13.08106 -12.98993 -12.89106 -12.73411 -12.44715 -12.42592 -11.92509 -11.85245 -11.75796 -11.39293 -11.21970 -11.19632 -11.09595 -11.04055 -10.80788 -10.62802 -10.31886 -9.94170 -9.71817 -9.58612 -9.37295 -9.23246 -8.79516 -8.66096 -8.48627 -7.99091 -7.48557 -6.28310 -4.37923 1.30225 1.53746 1.58627 1.65482 3.19056 3.23517 3.24768 3.29202 3.63722 4.06254 4.10451 4.24391 4.48775 4.59741 4.65439 4.68204 4.92362 5.04270 5.04680 5.16873 5.20086 5.24151 5.26887 5.32607 5.33907 5.59318 5.63937 5.64959 5.69440 5.73586 5.77221 5.88402 5.97077 6.02955 6.06252 6.12119 6.16129 6.29162 6.36876 6.52228 6.58422 6.61744 6.71289 6.85506 6.92045 6.94883 6.99621 7.23954 7.43995 7.64710 7.66238 7.91305 8.19481 8.43514 8.72542 9.12880 9.32202 10.77628 Molecular weight = 351.17amu Principal moments of inertia in cm(-1) A = 0.006800 B = 0.003855 C = 0.002734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4116.693627 B = 7261.780476 C =10240.660436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.068 3.932 3 Si 0.898 3.102 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.546 4.546 8 H 0.063 0.937 9 C 0.239 3.761 10 N -0.604 5.604 11 C 0.179 3.821 12 C -0.147 4.147 13 C -0.053 4.053 14 C -0.182 4.182 15 C 0.090 3.910 16 N -0.490 5.490 17 C 0.115 3.885 18 C 0.711 3.289 19 O -0.603 6.603 20 N -0.682 5.682 21 C 0.184 3.816 22 C -0.122 4.122 23 C -0.090 4.090 24 C -0.130 4.130 25 C -0.081 4.081 26 C -0.142 4.142 27 C -0.079 4.079 28 C -0.120 4.120 29 C -0.076 4.076 30 H 0.267 0.733 31 H 0.041 0.959 32 H 0.030 0.970 33 H 0.093 0.907 34 H 0.085 0.915 35 H 0.138 0.862 36 H 0.129 0.871 37 H 0.149 0.851 38 H 0.157 0.843 39 H 0.419 0.581 40 H 0.143 0.857 41 H 0.117 0.883 42 H 0.121 0.879 43 H 0.072 0.928 44 H 0.078 0.922 45 H 0.070 0.930 46 H 0.073 0.927 47 H 0.069 0.931 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.100 -11.823 7.930 14.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.136 4.136 3 Si 0.725 3.275 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.585 4.585 8 H 0.081 0.919 9 C 0.119 3.881 10 N -0.337 5.337 11 C 0.054 3.946 12 C -0.151 4.151 13 C -0.080 4.080 14 C -0.202 4.202 15 C -0.068 4.068 16 N -0.198 5.198 17 C -0.043 4.043 18 C 0.414 3.586 19 O -0.484 6.484 20 N -0.330 5.330 21 C 0.087 3.913 22 C -0.142 4.142 23 C -0.109 4.109 24 C -0.131 4.131 25 C -0.082 4.082 26 C -0.163 4.163 27 C -0.117 4.117 28 C -0.158 4.158 29 C -0.113 4.113 30 H 0.077 0.923 31 H 0.059 0.941 32 H 0.048 0.952 33 H 0.111 0.889 34 H 0.104 0.896 35 H 0.156 0.844 36 H 0.147 0.853 37 H 0.167 0.833 38 H 0.175 0.825 39 H 0.259 0.741 40 H 0.161 0.839 41 H 0.135 0.865 42 H 0.139 0.861 43 H 0.091 0.909 44 H 0.096 0.904 45 H 0.088 0.912 46 H 0.091 0.909 47 H 0.088 0.912 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.718 -12.084 7.280 14.367 hybrid contribution 0.682 1.272 0.437 1.508 sum 3.400 -10.812 7.717 13.712 Atomic orbital electron populations 1.69907 1.06009 1.27670 1.48961 1.24946 0.94842 0.99357 0.94449 0.86550 0.79564 0.82449 0.78910 1.20016 1.21105 1.20093 1.21476 0.93701 0.90308 1.52993 0.91903 1.19387 0.87457 0.82653 0.98580 1.47403 1.47652 1.35966 1.02674 1.20022 0.95736 0.93109 0.85705 1.21470 0.98740 0.96056 0.98784 1.21673 0.98606 0.92165 0.95534 1.22104 0.96989 1.00445 1.00671 1.22689 0.95754 0.93555 0.94752 1.67703 1.28964 1.00806 1.22376 1.22806 0.89622 0.98545 0.93283 1.15759 0.80644 0.81565 0.80642 1.90782 1.38816 1.32306 1.86514 1.42837 1.53848 1.33328 1.02955 1.17416 0.92678 0.95995 0.85168 1.21249 0.95331 0.99852 0.97774 1.20451 0.98863 0.99709 0.91901 1.20447 0.95026 1.02022 0.95607 1.20198 0.95581 0.98201 0.94232 1.20302 0.99153 1.04076 0.92735 1.21003 0.98725 0.99226 0.92702 1.22272 0.95108 0.99020 0.99355 1.20951 0.97292 1.00471 0.92591 0.92282 0.94098 0.95216 0.88916 0.89630 0.84396 0.85320 0.83336 0.82532 0.74102 0.83931 0.86488 0.86101 0.90938 0.90383 0.91164 0.90862 0.91228 0.90753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.44 13.29 55.43 0.74 -22.70 16 2 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 3 Si 0.90 19.93 29.54 -169.99 -5.02 14.90 16 4 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 5 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 6 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 7 C -0.55 -13.41 9.39 -34.44 -0.32 -13.73 16 8 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 9 C 0.24 5.34 4.89 -5.19 -0.03 5.31 16 10 N -0.60 -12.01 2.44 -182.18 -0.44 -12.46 16 11 C 0.18 3.09 5.56 -5.19 -0.03 3.06 16 12 C -0.15 -2.41 5.48 -104.48 -0.57 -2.98 16 13 C -0.05 -0.82 9.86 -39.28 -0.39 -1.21 16 14 C -0.18 -2.45 10.11 -39.44 -0.40 -2.85 16 15 C 0.09 1.25 11.18 -17.54 -0.20 1.05 16 16 N -0.49 -8.05 10.36 -13.25 -0.14 -8.18 16 17 C 0.11 1.90 10.86 -17.55 -0.19 1.71 16 18 C 0.71 14.46 8.12 -86.92 -0.71 13.75 16 19 O -0.60 -12.66 13.01 5.29 0.07 -12.59 16 20 N -0.68 -13.04 5.17 -14.25 -0.07 -13.11 16 21 C 0.18 3.25 6.30 -83.73 -0.53 2.73 16 22 C -0.12 -2.08 8.70 -39.44 -0.34 -2.42 16 23 C -0.09 -1.32 10.03 -39.56 -0.40 -1.71 16 24 C -0.13 -1.75 6.14 -104.15 -0.64 -2.39 16 25 C -0.08 -1.13 6.13 -104.22 -0.64 -1.77 16 26 C -0.14 -2.22 9.96 -39.34 -0.39 -2.61 16 27 C -0.08 -0.84 6.77 -26.85 -0.18 -1.02 16 28 C -0.12 -1.07 7.08 -25.33 -0.18 -1.25 16 29 C -0.08 -0.77 6.77 -26.84 -0.18 -0.95 16 30 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 31 H 0.04 0.96 8.07 -51.93 -0.42 0.54 16 32 H 0.03 0.70 6.43 -51.93 -0.33 0.36 16 33 H 0.09 1.54 8.02 -51.93 -0.42 1.12 16 34 H 0.09 1.45 7.37 -51.93 -0.38 1.06 16 35 H 0.14 2.15 7.71 -52.49 -0.40 1.74 16 36 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 37 H 0.15 1.59 8.06 -52.49 -0.42 1.16 16 38 H 0.16 2.51 8.06 -52.48 -0.42 2.09 16 39 H 0.42 8.15 6.62 -40.82 -0.27 7.88 16 40 H 0.14 2.64 6.23 -52.49 -0.33 2.31 16 41 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 42 H 0.12 1.76 8.06 -52.48 -0.42 1.34 16 43 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 45 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 47 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 48 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 399.62 15.07 6.02 6.02 Total: -1.00 -28.56 399.62 -12.01 -40.57 By element: Atomic # 1 Polarization: 19.97 SS G_CDS: -6.75 Total: 13.22 kcal Atomic # 6 Polarization: 0.74 SS G_CDS: -6.41 Total: -5.67 kcal Atomic # 7 Polarization: -56.54 SS G_CDS: 0.08 Total: -56.46 kcal Atomic # 8 Polarization: -12.66 SS G_CDS: 0.07 Total: -12.59 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -5.02 Total: 14.90 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -28.56 -12.01 -40.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096459862.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.997 kcal (2) G-P(sol) polarization free energy of solvation -28.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.566 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds