Wall clock time and date at job start Tue Mar 31 2020 06:22:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30635 * 1 3 3 Si 1.86802 * 119.99945 * 2 1 4 4 H 1.48508 * 109.47060 * 270.00117 * 3 2 1 5 5 H 1.48497 * 109.47322 * 29.99878 * 3 2 1 6 6 H 1.48495 * 109.47093 * 150.00423 * 3 2 1 7 7 C 1.40117 * 119.99944 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00146 * 179.97438 * 7 2 1 9 9 C 1.46200 * 120.00200 * 0.02562 * 7 2 1 10 10 O 1.21723 * 119.99991 * 0.02562 * 9 7 2 11 11 N 1.34780 * 119.99973 * 179.97438 * 9 7 2 12 12 C 1.39072 * 119.99889 * 184.79514 * 11 9 7 13 13 C 1.39275 * 119.93546 * 33.96611 * 12 11 9 14 14 C 1.37600 * 120.06950 * 180.02562 * 13 12 11 15 15 C 1.39832 * 119.93386 * 359.97438 * 14 13 12 16 16 C 1.47465 * 120.06892 * 179.97438 * 15 14 13 17 17 O 1.21504 * 120.00093 * 359.97438 * 16 15 14 18 18 O 1.34758 * 120.00029 * 179.97438 * 16 15 14 19 19 C 1.45191 * 116.99908 * 180.02562 * 18 16 15 20 20 C 1.50706 * 109.47116 * 180.02562 * 19 18 16 21 21 C 1.32567 * 120.00129 * 135.22598 * 20 19 18 22 22 C 1.47808 * 120.00036 * 7.72750 * 21 20 19 23 23 C 1.39542 * 120.14260 * 35.06052 * 22 21 20 24 24 C 1.37973 * 119.85671 * 179.97438 * 23 22 21 25 25 C 1.38348 * 120.14177 * 359.97438 * 24 23 22 26 26 C 1.38342 * 120.28724 * 359.97438 * 25 24 23 27 27 C 1.37981 * 120.14114 * 0.02562 * 26 25 24 28 28 C 1.39843 * 119.86684 * 0.24921 * 15 14 13 29 29 C 1.37609 * 119.92728 * 359.53738 * 28 15 14 30 30 H 0.96999 * 119.99994 * 359.97438 * 1 2 3 31 31 H 0.97001 * 119.99921 * 4.79385 * 11 9 7 32 32 H 1.08005 * 119.96181 * 0.02562 * 13 12 11 33 33 H 1.08001 * 120.03538 * 179.97438 * 14 13 12 34 34 H 1.08992 * 109.47807 * 59.99896 * 19 18 16 35 35 H 1.09003 * 109.47157 * 299.99357 * 19 18 16 36 36 H 1.07994 * 119.99400 * 315.22398 * 20 19 18 37 37 H 1.07999 * 119.99849 * 187.72496 * 21 20 19 38 38 H 1.08001 * 120.06935 * 359.97438 * 23 22 21 39 39 H 1.07994 * 119.92943 * 179.72447 * 24 23 22 40 40 H 1.07994 * 119.85406 * 179.97438 * 25 24 23 41 41 H 1.07999 * 119.93168 * 179.97438 * 26 25 24 42 42 H 1.07992 * 120.07005 * 180.02562 * 27 26 25 43 43 H 1.07993 * 120.03703 * 179.75066 * 28 15 14 44 44 H 1.07992 * 119.96863 * 180.20568 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 2.4878 2.0465 -1.4002 5 1 1.4378 2.6527 0.7000 6 1 3.5379 1.4402 0.6999 7 6 2.0069 -1.2135 0.0005 8 1 3.0869 -1.2135 0.0001 9 6 1.2760 -2.4796 0.0005 10 8 0.0587 -2.4796 -0.0004 11 7 1.9499 -3.6468 0.0005 12 6 1.2582 -4.8491 -0.1001 13 6 0.0959 -4.9204 -0.8643 14 6 -0.5909 -6.1084 -0.9653 15 6 -0.1206 -7.2451 -0.3004 16 6 -0.8547 -8.5197 -0.4062 17 8 -1.8695 -8.5829 -1.0713 18 8 -0.3999 -9.6143 0.2348 19 6 -1.1728 -10.8343 0.0854 20 6 -0.5171 -11.9434 0.8672 21 6 -1.2530 -12.7470 1.6222 22 6 -2.7279 -12.6677 1.5667 23 6 -3.3692 -12.3795 0.3613 24 6 -4.7464 -12.3074 0.3161 25 6 -5.4912 -12.5206 1.4624 26 6 -4.8615 -12.8077 2.6603 27 6 -3.4850 -12.8826 2.7189 28 6 1.0441 -7.1693 0.4699 29 6 1.7290 -5.9794 0.5636 30 1 -0.4850 0.8400 0.0004 31 1 2.9173 -3.6482 0.0707 32 1 -0.2666 -4.0422 -1.3780 33 1 -1.4923 -6.1630 -1.5577 34 1 -1.2175 -11.1095 -0.9683 35 1 -2.1829 -10.6730 0.4620 36 1 0.5524 -12.0833 0.8124 37 1 -0.7748 -13.4597 2.2778 38 1 -2.7889 -12.2134 -0.5342 39 1 -5.2437 -12.0801 -0.6151 40 1 -6.5688 -12.4626 1.4218 41 1 -5.4485 -12.9726 3.5516 42 1 -2.9947 -13.1072 3.6545 43 1 1.4075 -8.0444 0.9879 44 1 2.6303 -5.9210 1.1556 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096465770.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:09 Heat of formation + Delta-G solvation = -50.643227 kcal Electronic energy + Delta-G solvation = -28135.689179 eV Core-core repulsion = 23983.373366 eV Total energy + Delta-G solvation = -4152.315813 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 351.130 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.44319 -39.64420 -39.09523 -37.11110 -36.42391 -34.96194 -33.64992 -32.58588 -31.39478 -30.61273 -30.25100 -29.53821 -27.19066 -26.38423 -23.64281 -22.85560 -22.70589 -22.27526 -20.86972 -19.92418 -19.65892 -17.92029 -17.44861 -17.37924 -16.58416 -16.49247 -16.14082 -15.76155 -15.60070 -15.26369 -14.63899 -14.46562 -14.22952 -14.04634 -13.79335 -13.71723 -13.23141 -13.08480 -13.02616 -12.92854 -12.67914 -12.66358 -12.14114 -11.99887 -11.90308 -11.39371 -11.37205 -11.21343 -11.15785 -10.86001 -10.81017 -10.69063 -10.41772 -10.33955 -10.07672 -9.50258 -9.20129 -9.00549 -8.62999 -8.61834 -7.90363 -7.31975 -6.45097 -4.93377 0.62678 1.09044 1.14522 1.85887 1.87423 2.85936 2.91129 3.02506 3.09160 3.12475 3.53700 3.90382 4.12831 4.33243 4.40951 4.45935 4.50874 4.59932 4.67641 4.78006 4.95098 4.99370 5.10837 5.15050 5.20695 5.29339 5.34255 5.42870 5.51667 5.61631 5.71828 5.76919 5.91054 5.95094 6.01934 6.07352 6.21275 6.22163 6.35428 6.40277 6.43577 6.60799 6.66853 6.84427 6.89267 7.15697 7.20886 7.57746 7.86799 7.96404 8.01899 8.74370 9.03762 10.24203 10.44969 Molecular weight = 351.13amu Principal moments of inertia in cm(-1) A = 0.021964 B = 0.001667 C = 0.001617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.511249 B =16797.110940 C =17315.113318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.756 5.756 2 C 0.085 3.915 3 Si 0.915 3.085 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.263 1.263 7 C -0.535 4.535 8 H 0.074 0.926 9 C 0.538 3.462 10 O -0.555 6.555 11 N -0.694 5.694 12 C 0.236 3.764 13 C -0.147 4.147 14 C -0.029 4.029 15 C -0.187 4.187 16 C 0.518 3.482 17 O -0.520 6.520 18 O -0.354 6.354 19 C 0.085 3.915 20 C -0.141 4.141 21 C -0.105 4.105 22 C -0.068 4.068 23 C -0.113 4.113 24 C -0.118 4.118 25 C -0.117 4.117 26 C -0.121 4.121 27 C -0.106 4.106 28 C -0.035 4.035 29 C -0.195 4.195 30 H 0.274 0.726 31 H 0.397 0.603 32 H 0.148 0.852 33 H 0.131 0.869 34 H 0.078 0.922 35 H 0.088 0.912 36 H 0.130 0.870 37 H 0.131 0.869 38 H 0.127 0.873 39 H 0.125 0.875 40 H 0.122 0.878 41 H 0.123 0.877 42 H 0.125 0.875 43 H 0.130 0.870 44 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.831 -24.243 2.840 24.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.384 5.384 2 C -0.137 4.137 3 Si 0.739 3.261 4 H -0.195 1.195 5 H -0.202 1.202 6 H -0.187 1.187 7 C -0.571 4.571 8 H 0.092 0.908 9 C 0.345 3.655 10 O -0.436 6.436 11 N -0.336 5.336 12 C 0.134 3.866 13 C -0.168 4.168 14 C -0.048 4.048 15 C -0.190 4.190 16 C 0.365 3.635 17 O -0.410 6.410 18 O -0.272 6.272 19 C 0.012 3.988 20 C -0.159 4.159 21 C -0.123 4.123 22 C -0.068 4.068 23 C -0.131 4.131 24 C -0.136 4.136 25 C -0.135 4.135 26 C -0.139 4.139 27 C -0.124 4.124 28 C -0.054 4.054 29 C -0.217 4.217 30 H 0.085 0.915 31 H 0.231 0.769 32 H 0.165 0.835 33 H 0.149 0.851 34 H 0.096 0.904 35 H 0.106 0.894 36 H 0.148 0.852 37 H 0.149 0.851 38 H 0.145 0.855 39 H 0.143 0.857 40 H 0.140 0.860 41 H 0.141 0.859 42 H 0.143 0.857 43 H 0.148 0.852 44 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -3.171 -24.025 2.648 24.378 hybrid contribution 0.832 0.707 0.091 1.096 sum -2.339 -23.318 2.738 23.594 Atomic orbital electron populations 1.69972 1.07203 1.28072 1.33104 1.25764 0.94749 1.00649 0.92500 0.86243 0.80095 0.80699 0.79075 1.19484 1.20220 1.18713 1.20868 0.93906 0.88843 1.53489 0.90792 1.18475 0.87565 0.82028 0.77429 1.90660 1.13588 1.85845 1.53507 1.44309 1.09996 1.04489 1.74770 1.18297 0.92221 0.86452 0.89607 1.21299 0.96728 0.98140 1.00599 1.21046 0.98018 0.90432 0.95288 1.18780 0.99877 0.90851 1.09469 1.21262 0.82782 0.83813 0.75655 1.90796 1.25051 1.85414 1.39720 1.86545 1.54029 1.18735 1.67850 1.22466 0.94817 0.81255 1.00271 1.23019 1.00748 0.94768 0.97328 1.21706 0.91501 1.00821 0.98281 1.19126 0.93235 1.00669 0.93760 1.21537 0.94955 0.99092 0.97495 1.21147 0.93876 0.99766 0.98791 1.21263 1.00093 0.99290 0.92872 1.21124 0.94605 1.00177 0.98036 1.21266 0.93871 0.99622 0.97642 1.21028 0.92458 0.97304 0.94657 1.20863 1.03669 0.93036 1.04129 0.91527 0.76903 0.83483 0.85144 0.90397 0.89439 0.85174 0.85096 0.85523 0.85678 0.85959 0.85867 0.85735 0.85194 0.85588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -21.34 11.82 55.55 0.66 -20.68 16 2 C 0.09 2.22 5.50 -17.36 -0.10 2.13 16 3 Si 0.91 18.88 29.56 -169.99 -5.02 13.85 16 4 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 5 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 6 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 7 C -0.54 -14.02 9.54 -35.68 -0.34 -14.36 16 8 H 0.07 1.74 7.85 -52.49 -0.41 1.33 16 9 C 0.54 14.25 7.47 -13.06 -0.10 14.15 16 10 O -0.55 -16.70 12.69 5.17 0.07 -16.63 16 11 N -0.69 -14.64 5.30 -11.18 -0.06 -14.70 16 12 C 0.24 4.67 6.27 -83.80 -0.53 4.15 16 13 C -0.15 -3.03 8.62 -39.43 -0.34 -3.37 16 14 C -0.03 -0.53 9.58 -39.22 -0.38 -0.90 16 15 C -0.19 -3.18 5.88 -104.94 -0.62 -3.79 16 16 C 0.52 8.52 7.89 34.49 0.27 8.79 16 17 O -0.52 -9.52 16.13 -19.27 -0.31 -9.83 16 18 O -0.35 -4.96 9.44 -40.65 -0.38 -5.34 16 19 C 0.08 0.97 4.06 36.01 0.15 1.11 16 20 C -0.14 -1.23 9.86 -36.21 -0.36 -1.59 16 21 C -0.11 -0.84 9.81 -37.58 -0.37 -1.21 16 22 C -0.07 -0.63 5.20 -105.01 -0.55 -1.17 16 23 C -0.11 -1.08 7.39 -39.19 -0.29 -1.37 16 24 C -0.12 -1.07 10.03 -39.64 -0.40 -1.47 16 25 C -0.12 -0.98 10.04 -39.50 -0.40 -1.37 16 26 C -0.12 -0.98 10.03 -39.64 -0.40 -1.38 16 27 C -0.11 -0.90 9.79 -39.19 -0.38 -1.28 16 28 C -0.04 -0.54 9.60 -39.21 -0.38 -0.92 16 29 C -0.20 -3.16 9.94 -39.43 -0.39 -3.55 16 30 H 0.27 7.00 8.29 -40.82 -0.34 6.66 16 31 H 0.40 6.98 8.79 -40.82 -0.36 6.62 16 32 H 0.15 3.44 6.42 -52.48 -0.34 3.10 16 33 H 0.13 2.30 7.64 -52.49 -0.40 1.90 16 34 H 0.08 0.83 7.56 -51.93 -0.39 0.44 16 35 H 0.09 1.09 5.20 -51.93 -0.27 0.82 16 36 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 37 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 38 H 0.13 1.13 5.81 -52.49 -0.30 0.83 16 39 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 40 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 41 H 0.12 0.73 8.06 -52.49 -0.42 0.30 16 42 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 43 H 0.13 1.63 7.60 -52.49 -0.40 1.24 16 44 H 0.13 1.70 8.06 -52.49 -0.42 1.28 16 LS Contribution 384.32 15.07 5.79 5.79 Total: -1.00 -33.34 384.32 -10.11 -43.45 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: -4.97 Total: 11.49 kcal Atomic # 6 Polarization: -1.53 SS G_CDS: -5.88 Total: -7.40 kcal Atomic # 7 Polarization: -35.98 SS G_CDS: 0.60 Total: -35.38 kcal Atomic # 8 Polarization: -31.18 SS G_CDS: -0.63 Total: -31.80 kcal Atomic # 14 Polarization: 18.88 SS G_CDS: -5.02 Total: 13.85 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.34 -10.11 -43.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096465770.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.197 kcal (2) G-P(sol) polarization free energy of solvation -33.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds