Wall clock time and date at job start Tue Mar 31 2020 06:22:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86806 * 120.00110 * 2 1 4 4 H 1.48497 * 109.46764 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.46974 * 299.99871 * 3 2 1 6 6 H 1.48498 * 109.46892 * 59.99992 * 3 2 1 7 7 C 1.39938 * 119.99832 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99564 * 191.78303 * 7 2 1 9 9 C 1.41440 * 119.99907 * 11.78936 * 7 2 1 10 10 C 1.40792 * 120.17327 * 207.51592 * 9 7 2 11 11 C 1.37710 * 120.03815 * 179.97438 * 10 9 7 12 12 C 1.38373 * 120.40745 * 359.73987 * 11 10 9 13 13 C 1.39879 * 120.36384 * 0.51808 * 12 11 10 14 14 C 1.47881 * 120.02537 * 179.76164 * 13 12 11 15 15 O 1.21552 * 120.00001 * 254.06618 * 14 13 12 16 16 N 1.34782 * 120.00038 * 74.07184 * 14 13 12 17 17 C 1.46678 * 121.32487 * 7.47971 * 16 14 13 18 18 C 1.50826 * 109.63418 * 135.33511 * 17 16 14 19 19 C 1.38831 * 117.79839 * 190.78395 * 18 17 16 20 20 C 1.37950 * 120.50590 * 181.43797 * 19 18 17 21 21 C 1.38261 * 119.71857 * 0.18158 * 20 19 18 22 22 C 1.37915 * 119.82756 * 359.70792 * 21 20 19 23 23 C 1.37671 * 122.33338 * 12.21479 * 18 17 16 24 24 C 1.50597 * 122.85520 * 357.72404 * 23 18 17 25 25 C 1.47218 * 121.32514 * 187.46263 * 16 14 13 26 26 H 1.09003 * 109.81707 * 124.55282 * 25 16 14 27 27 C 1.50702 * 109.77526 * 3.78834 * 25 16 14 28 28 O 1.20825 * 119.99786 * 110.20731 * 27 25 16 29 29 O 1.34231 * 119.99940 * 290.21752 * 27 25 16 30 30 C 1.39030 * 119.94635 * 359.48618 * 13 12 11 31 31 H 0.97010 * 119.99787 * 359.97438 * 1 2 3 32 32 H 1.07999 * 119.97754 * 359.97438 * 10 9 7 33 33 H 1.07994 * 119.79476 * 180.02562 * 11 10 9 34 34 H 1.08010 * 119.81788 * 180.27842 * 12 11 10 35 35 H 1.08998 * 109.43733 * 255.60720 * 17 16 14 36 36 H 1.08996 * 109.44228 * 15.52698 * 17 16 14 37 37 H 1.08007 * 119.74788 * 1.72119 * 19 18 17 38 38 H 1.08004 * 120.14576 * 180.15261 * 20 19 18 39 39 H 1.08000 * 120.09256 * 179.73419 * 21 20 19 40 40 H 1.07998 * 119.71435 * 180.15107 * 22 21 20 41 41 H 1.08997 * 109.20034 * 140.96112 * 24 23 18 42 42 H 1.09003 * 109.19723 * 260.29895 * 24 23 18 43 43 H 0.96701 * 116.99498 * 179.97438 * 29 27 25 44 44 H 1.07996 * 120.20306 * 180.23244 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 3.7022 1.3463 0.0006 5 1 1.8836 2.3964 -1.2125 6 1 1.8835 2.3964 1.2125 7 6 2.0079 -1.2119 0.0005 8 1 3.0708 -1.2216 0.1916 9 6 1.3230 -2.4240 -0.2492 10 6 1.8058 -3.6330 0.2869 11 6 1.1365 -4.8114 0.0424 12 6 -0.0150 -4.8167 -0.7248 13 6 -0.5067 -3.6261 -1.2702 14 6 -1.7351 -3.6412 -2.0934 15 8 -1.6600 -3.5114 -3.2997 16 7 -2.9380 -3.7987 -1.5062 17 6 -3.0802 -3.7952 -0.0463 18 6 -4.2625 -2.9447 0.3457 19 6 -4.4200 -2.6351 1.6898 20 6 -5.4977 -1.8857 2.1142 21 6 -6.4297 -1.4431 1.1939 22 6 -6.2730 -1.7480 -0.1420 23 6 -5.1870 -2.5008 -0.5727 24 6 -5.0731 -2.7816 -2.0479 25 6 -4.1615 -3.9806 -2.3045 26 1 -4.6662 -4.8985 -2.0033 27 6 -3.8097 -4.0492 -3.7683 28 8 -3.9188 -5.0928 -4.3675 29 8 -3.3750 -2.9512 -4.4063 30 6 0.1572 -2.4278 -1.0329 31 1 -0.4850 0.8401 0.0004 32 1 2.7016 -3.6362 0.8901 33 1 1.5101 -5.7365 0.4559 34 1 -0.5349 -5.7458 -0.9068 35 1 -3.2305 -4.8157 0.3058 36 1 -2.1770 -3.3850 0.4052 37 1 -3.6908 -2.9797 2.4082 38 1 -5.6132 -1.6462 3.1610 39 1 -7.2780 -0.8596 1.5200 40 1 -7.0008 -1.3992 -0.8596 41 1 -6.0639 -2.9919 -2.4503 42 1 -4.6614 -1.9053 -2.5488 43 1 -3.1613 -3.0445 -5.3448 44 1 -0.2209 -1.5057 -1.4488 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097017928.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:00 Heat of formation + Delta-G solvation = -70.136432 kcal Electronic energy + Delta-G solvation = -31354.367036 eV Core-core repulsion = 27201.205934 eV Total energy + Delta-G solvation = -4153.161101 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 351.130 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.99353 -39.42990 -38.79401 -37.15555 -35.94064 -35.61374 -33.79941 -33.10665 -31.38756 -30.53478 -29.68934 -29.29161 -25.81225 -25.38911 -24.98207 -22.93211 -22.07284 -21.40820 -21.07613 -20.49899 -18.94588 -17.75052 -17.40507 -16.93754 -16.55821 -15.86604 -15.66833 -15.36852 -15.07323 -14.90863 -14.80702 -14.56434 -14.44453 -14.09587 -13.58101 -13.27007 -13.18765 -12.94174 -12.88321 -12.60932 -12.51223 -12.28704 -12.13761 -11.76062 -11.60568 -11.25429 -11.20845 -11.16183 -11.06030 -10.99073 -10.80547 -10.55140 -10.23490 -10.17703 -9.78037 -9.33666 -9.10584 -8.82908 -8.60644 -8.48801 -7.67262 -7.55324 -6.83481 -4.50575 1.35834 1.39312 2.19750 2.48566 2.75854 3.00730 3.04014 3.08530 3.09124 3.26918 3.43398 3.75007 3.87273 4.49817 4.59636 4.61052 4.74183 4.90875 4.96559 5.07166 5.26346 5.37829 5.42974 5.47973 5.50844 5.61962 5.66523 5.75490 5.90678 5.99988 6.08461 6.12474 6.27135 6.40560 6.49436 6.52009 6.59872 6.64457 6.87558 6.90415 6.99076 7.00436 7.15137 7.30718 7.50531 7.65185 7.75958 7.88393 8.07901 8.22761 8.42841 8.49717 8.74784 8.76883 10.10459 Molecular weight = 351.13amu Principal moments of inertia in cm(-1) A = 0.008498 B = 0.004484 C = 0.003720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3294.185792 B = 6243.396590 C = 7524.981160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.074 3.926 3 Si 0.910 3.090 4 H -0.260 1.260 5 H -0.272 1.272 6 H -0.274 1.274 7 C -0.459 4.459 8 H 0.080 0.920 9 C 0.106 3.894 10 C -0.209 4.209 11 C -0.094 4.094 12 C -0.211 4.211 13 C -0.114 4.114 14 C 0.580 3.420 15 O -0.517 6.517 16 N -0.606 5.606 17 C 0.155 3.845 18 C -0.084 4.084 19 C -0.105 4.105 20 C -0.119 4.119 21 C -0.122 4.122 22 C -0.119 4.119 23 C -0.070 4.070 24 C -0.092 4.092 25 C 0.153 3.847 26 H 0.116 0.884 27 C 0.508 3.492 28 O -0.532 6.532 29 O -0.486 6.486 30 C -0.112 4.112 31 H 0.281 0.719 32 H 0.097 0.903 33 H 0.095 0.905 34 H 0.091 0.909 35 H 0.082 0.918 36 H 0.117 0.883 37 H 0.127 0.873 38 H 0.122 0.878 39 H 0.120 0.880 40 H 0.120 0.880 41 H 0.088 0.912 42 H 0.098 0.902 43 H 0.403 0.597 44 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.460 -1.921 2.396 12.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.144 4.144 3 Si 0.735 3.265 4 H -0.184 1.184 5 H -0.197 1.197 6 H -0.199 1.199 7 C -0.488 4.488 8 H 0.099 0.901 9 C 0.104 3.896 10 C -0.228 4.228 11 C -0.112 4.112 12 C -0.231 4.231 13 C -0.117 4.117 14 C 0.372 3.628 15 O -0.394 6.394 16 N -0.343 5.343 17 C 0.033 3.967 18 C -0.085 4.085 19 C -0.124 4.124 20 C -0.137 4.137 21 C -0.140 4.140 22 C -0.137 4.137 23 C -0.070 4.070 24 C -0.129 4.129 25 C 0.049 3.951 26 H 0.134 0.866 27 C 0.352 3.648 28 O -0.422 6.422 29 O -0.295 6.295 30 C -0.132 4.132 31 H 0.092 0.908 32 H 0.115 0.885 33 H 0.113 0.887 34 H 0.109 0.891 35 H 0.100 0.900 36 H 0.135 0.865 37 H 0.145 0.855 38 H 0.140 0.860 39 H 0.138 0.862 40 H 0.138 0.862 41 H 0.106 0.894 42 H 0.116 0.884 43 H 0.261 0.739 44 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -12.710 -1.909 1.983 13.005 hybrid contribution 0.393 0.777 -0.392 0.955 sum -12.317 -1.132 1.591 12.470 Atomic orbital electron populations 1.69748 1.07420 1.29280 1.35708 1.25903 0.94866 1.01373 0.92239 0.86215 0.80850 0.80828 0.78615 1.18392 1.19693 1.19921 1.19618 0.96314 0.90332 1.42548 0.90144 1.17537 0.91117 0.92436 0.88543 1.21157 1.02704 0.93162 1.05826 1.20429 0.95414 0.96753 0.98641 1.20210 1.00730 0.94970 1.07179 1.19235 0.94830 0.96029 1.01563 1.19174 0.83100 0.72752 0.87819 1.90703 1.84697 1.49097 1.14865 1.48117 1.05014 1.74283 1.06843 1.20574 0.98025 0.98988 0.79109 1.19840 0.95895 0.99102 0.93621 1.21045 0.98031 0.98462 0.94831 1.21043 0.94772 0.98336 0.99593 1.21016 0.99389 1.00326 0.93258 1.21071 0.97642 0.98894 0.96058 1.19287 0.94724 0.98788 0.94189 1.20845 0.99751 0.98605 0.93735 1.21010 0.87456 1.00701 0.85954 0.86602 1.22322 0.71768 0.81359 0.89386 1.90686 1.51906 1.31295 1.68280 1.84574 1.76464 1.38920 1.29579 1.21410 0.97480 0.95047 0.99248 0.90785 0.88528 0.88708 0.89089 0.90038 0.86493 0.85515 0.85996 0.86222 0.86219 0.89367 0.88384 0.73920 0.85506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -19.64 10.81 55.55 0.60 -19.04 16 2 C 0.07 1.77 5.24 -17.34 -0.09 1.68 16 3 Si 0.91 18.21 29.58 -169.99 -5.03 13.18 16 4 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 5 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 6 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 7 C -0.46 -11.56 9.07 -37.73 -0.34 -11.90 16 8 H 0.08 1.95 7.87 -52.49 -0.41 1.54 16 9 C 0.11 2.67 5.56 -106.87 -0.59 2.07 16 10 C -0.21 -4.75 9.78 -38.81 -0.38 -5.13 16 11 C -0.09 -1.95 10.01 -39.72 -0.40 -2.35 16 12 C -0.21 -4.43 9.65 -38.92 -0.38 -4.80 16 13 C -0.11 -2.56 3.80 -105.04 -0.40 -2.96 16 14 C 0.58 12.31 7.00 -12.31 -0.09 12.22 16 15 O -0.52 -11.88 12.34 -20.61 -0.25 -12.13 16 16 N -0.61 -10.50 2.93 -169.24 -0.50 -10.99 16 17 C 0.16 2.37 5.93 -5.04 -0.03 2.34 16 18 C -0.08 -1.18 5.82 -104.55 -0.61 -1.79 16 19 C -0.11 -1.35 9.62 -39.47 -0.38 -1.73 16 20 C -0.12 -1.35 10.05 -39.68 -0.40 -1.75 16 21 C -0.12 -1.32 10.04 -39.69 -0.40 -1.72 16 22 C -0.12 -1.36 9.59 -39.43 -0.38 -1.74 16 23 C -0.07 -0.92 5.76 -104.60 -0.60 -1.53 16 24 C -0.09 -1.17 5.18 -28.04 -0.15 -1.32 16 25 C 0.15 2.31 3.32 -68.80 -0.23 2.08 16 26 H 0.12 1.52 8.13 -51.93 -0.42 1.10 16 27 C 0.51 8.71 5.25 36.01 0.19 8.90 16 28 O -0.53 -10.30 17.85 -19.52 -0.35 -10.65 16 29 O -0.49 -7.96 10.08 -47.60 -0.48 -8.44 16 30 C -0.11 -2.79 8.40 -38.44 -0.32 -3.12 16 31 H 0.28 6.42 8.30 -40.82 -0.34 6.08 16 32 H 0.10 2.05 8.06 -52.49 -0.42 1.63 16 33 H 0.09 1.68 8.06 -52.49 -0.42 1.26 16 34 H 0.09 1.75 8.06 -52.48 -0.42 1.33 16 35 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.12 2.07 6.66 -51.93 -0.35 1.72 16 37 H 0.13 1.47 8.05 -52.48 -0.42 1.04 16 38 H 0.12 1.11 8.06 -52.48 -0.42 0.68 16 39 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 40 H 0.12 1.11 8.05 -52.49 -0.42 0.69 16 41 H 0.09 0.88 8.10 -51.93 -0.42 0.46 16 42 H 0.10 1.40 7.53 -51.93 -0.39 1.01 16 43 H 0.40 5.15 9.10 45.56 0.41 5.56 16 44 H 0.13 3.41 6.16 -52.49 -0.32 3.09 16 LS Contribution 370.37 15.07 5.58 5.58 Total: -1.00 -30.56 370.37 -10.81 -41.37 By element: Atomic # 1 Polarization: 18.07 SS G_CDS: -4.42 Total: 13.65 kcal Atomic # 6 Polarization: -6.56 SS G_CDS: -5.97 Total: -12.53 kcal Atomic # 7 Polarization: -30.14 SS G_CDS: 0.10 Total: -30.04 kcal Atomic # 8 Polarization: -30.13 SS G_CDS: -1.08 Total: -31.22 kcal Atomic # 14 Polarization: 18.21 SS G_CDS: -5.03 Total: 13.18 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -30.56 -10.81 -41.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097017928.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.763 kcal (2) G-P(sol) polarization free energy of solvation -30.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds