Wall clock time and date at job start Tue Mar 31 2020 05:33:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38307 * 119.84541 * 2 1 4 4 C 1.38111 * 120.13221 * 180.02562 * 3 2 1 5 5 Cl 1.73596 * 120.09234 * 180.02562 * 4 3 2 6 6 C 1.39739 * 119.81624 * 359.97438 * 4 3 2 7 7 C 1.47766 * 120.15655 * 180.02562 * 6 4 3 8 8 O 1.21563 * 120.00056 * 0.02562 * 7 6 4 9 9 N 1.34770 * 119.99898 * 180.02562 * 7 6 4 10 10 C 1.46503 * 120.00094 * 180.02562 * 9 7 6 11 11 C 1.52997 * 109.47343 * 180.02562 * 10 9 7 12 12 C 1.53041 * 109.45945 * 295.02925 * 11 10 9 13 13 C 1.53194 * 109.31300 * 178.60159 * 12 11 10 14 14 N 1.46928 * 108.76432 * 54.65353 * 13 12 11 15 15 C 1.36935 * 120.63083 * 126.36453 * 14 13 12 16 16 H 1.08006 * 119.99917 * 331.85520 * 15 14 13 17 17 C 1.38818 * 120.00174 * 151.85686 * 15 14 13 18 18 N 1.31618 * 119.99801 * 343.07479 * 17 15 14 19 19 Si 1.86794 * 119.99926 * 163.07135 * 17 15 14 20 20 H 1.48497 * 109.47340 * 60.00207 * 19 17 15 21 21 H 1.48503 * 109.47240 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47546 * 300.00272 * 19 17 15 23 23 C 1.46922 * 118.73868 * 306.38055 * 14 13 12 24 24 C 1.53038 * 109.46047 * 174.97419 * 11 10 9 25 25 C 1.39587 * 119.68576 * 359.73743 * 6 4 3 26 26 C 1.37945 * 119.86453 * 0.52275 * 25 6 4 27 27 C 1.50701 * 119.90664 * 179.77443 * 26 25 6 28 28 H 1.09000 * 109.46939 * 270.02671 * 1 2 3 29 29 H 1.09001 * 109.46532 * 30.02286 * 1 2 3 30 30 H 1.08996 * 109.47265 * 150.02413 * 1 2 3 31 31 H 1.08004 * 119.93561 * 359.97432 * 3 2 1 32 32 H 0.96999 * 120.00131 * 0.02562 * 9 7 6 33 33 H 1.08997 * 109.46927 * 300.00369 * 10 9 7 34 34 H 1.09003 * 109.46891 * 60.00198 * 10 9 7 35 35 H 1.09002 * 109.46108 * 54.99791 * 11 10 9 36 36 H 1.09003 * 109.49652 * 298.56238 * 12 11 10 37 37 H 1.08997 * 109.50090 * 58.65854 * 12 11 10 38 38 H 1.09001 * 109.59810 * 294.86876 * 13 12 11 39 39 H 1.08996 * 109.70377 * 174.50165 * 13 12 11 40 40 H 0.97000 * 119.99705 * 180.02562 * 18 17 15 41 41 H 1.08998 * 109.59198 * 293.82369 * 23 14 13 42 42 H 1.09004 * 109.70597 * 173.46164 * 23 14 13 43 43 H 1.09005 * 109.49695 * 301.33512 * 24 11 10 44 44 H 1.08999 * 109.49797 * 61.40082 * 24 11 10 45 45 H 1.07999 * 120.06599 * 180.26715 * 25 6 4 46 46 H 1.09001 * 109.46809 * 269.71773 * 27 26 25 47 47 H 1.09003 * 109.47426 * 149.72077 * 27 26 25 48 48 H 1.09001 * 109.47472 * 29.71675 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1954 1.1996 0.0000 4 6 3.5765 1.2065 -0.0005 5 17 4.4393 2.7129 0.0001 6 6 4.2773 -0.0024 -0.0005 7 6 5.7550 -0.0038 -0.0005 8 8 6.3638 1.0484 -0.0001 9 7 6.4277 -1.1715 -0.0011 10 6 7.8928 -1.1730 -0.0005 11 6 8.4014 -2.6159 -0.0019 12 6 7.9946 -3.3012 1.3047 13 6 8.4752 -4.7556 1.2849 14 7 9.9202 -4.7724 1.0194 15 6 10.7761 -5.4342 1.8588 16 1 10.5246 -5.5531 2.9024 17 6 11.9671 -5.9521 1.3684 18 7 12.1317 -6.1101 0.0722 19 14 13.3360 -6.4246 2.5482 20 1 12.8465 -7.4716 3.4806 21 1 14.4936 -6.9479 1.7792 22 1 13.7565 -5.2294 3.3228 23 6 10.4293 -4.0655 -0.1636 24 6 9.9266 -2.6187 -0.1277 25 6 3.5750 -1.2086 0.0056 26 6 2.1956 -1.2003 0.0006 27 6 1.4363 -2.5021 0.0021 28 1 -0.3633 0.0005 1.0277 29 1 -0.3632 0.8898 -0.5142 30 1 -0.3633 -0.8902 -0.5134 31 1 1.6518 2.1329 -0.0004 32 1 5.9420 -2.0111 -0.0018 33 1 8.2569 -0.6588 -0.8899 34 1 8.2562 -0.6601 0.8900 35 1 7.9665 -3.1534 -0.8445 36 1 8.4496 -2.7789 2.1463 37 1 6.9096 -3.2780 1.4052 38 1 7.9530 -5.3025 0.4998 39 1 8.2755 -5.2218 2.2497 40 1 12.9637 -6.4723 -0.2705 41 1 10.0665 -4.5560 -1.0669 42 1 11.5193 -4.0737 -0.1559 43 1 10.2168 -2.1098 -1.0470 44 1 10.3632 -2.1025 0.7273 45 1 4.1104 -2.1465 0.0100 46 1 1.2526 -2.8166 -1.0253 47 1 0.4848 -2.3673 0.5164 48 1 2.0224 -3.2641 0.5160 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097080448.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:02 Heat of formation + Delta-G solvation = -9.088696 kcal Electronic energy + Delta-G solvation = -28186.683585 eV Core-core repulsion = 24267.288619 eV Total energy + Delta-G solvation = -3919.394966 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 350.150 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -40.58309 -39.08838 -37.76381 -36.64927 -34.96737 -33.65631 -32.95195 -32.43713 -30.78890 -29.75409 -28.45897 -27.09542 -26.52166 -24.10175 -23.05413 -22.37342 -21.91503 -20.95862 -20.19275 -19.11951 -17.96250 -16.75278 -16.65674 -15.96367 -15.40161 -15.35582 -15.05351 -14.77098 -14.66688 -14.00268 -13.97369 -13.72474 -13.56461 -13.41226 -13.29670 -13.18866 -13.14356 -12.81613 -12.56746 -12.35334 -12.30463 -11.89854 -11.85066 -11.66576 -11.34185 -11.27303 -11.24302 -10.97785 -10.71659 -10.51296 -10.25044 -10.22596 -9.93923 -9.65424 -9.54320 -9.41123 -9.30992 -9.01355 -8.76972 -8.46524 -6.67083 -5.79054 -3.21490 0.40301 0.78307 1.97581 2.62012 3.12090 3.38444 3.44347 3.44710 3.45841 4.22980 4.24742 4.39441 4.49763 4.65765 4.72176 4.91570 5.06893 5.10496 5.13771 5.15858 5.21280 5.22984 5.33718 5.37418 5.41339 5.55152 5.59444 5.60823 5.70587 5.74563 5.86553 5.94666 6.04436 6.05718 6.14350 6.31400 6.31856 6.41473 6.46559 6.59746 6.68750 6.75873 6.80753 6.96982 7.36444 7.48657 7.65769 7.79236 8.19015 8.45379 9.21533 9.85017 10.41712 11.29472 Molecular weight = 350.15amu Principal moments of inertia in cm(-1) A = 0.018041 B = 0.002138 C = 0.001973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.610207 B =13094.742972 C =14187.735377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.053 4.053 3 C -0.120 4.120 4 C 0.012 3.988 5 Cl -0.032 7.032 6 C -0.128 4.128 7 C 0.549 3.451 8 O -0.518 6.518 9 N -0.719 5.719 10 C 0.125 3.875 11 C -0.090 4.090 12 C -0.127 4.127 13 C 0.146 3.854 14 N -0.592 5.592 15 C -0.253 4.253 16 H 0.064 0.936 17 C 0.002 3.998 18 N -0.903 5.903 19 Si 0.902 3.098 20 H -0.283 1.283 21 H -0.291 1.291 22 H -0.284 1.284 23 C 0.172 3.828 24 C -0.133 4.133 25 C -0.072 4.072 26 C -0.091 4.091 27 C -0.118 4.118 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.138 0.862 32 H 0.398 0.602 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.060 0.940 37 H 0.045 0.955 38 H 0.016 0.984 39 H 0.052 0.948 40 H 0.254 0.746 41 H 0.017 0.983 42 H 0.088 0.912 43 H 0.051 0.949 44 H 0.058 0.942 45 H 0.136 0.864 46 H 0.075 0.925 47 H 0.072 0.928 48 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.886 11.989 -2.168 27.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.054 4.054 3 C -0.139 4.139 4 C -0.016 4.016 5 Cl -0.003 7.003 6 C -0.132 4.132 7 C 0.335 3.665 8 O -0.395 6.395 9 N -0.372 5.372 10 C 0.002 3.998 11 C -0.109 4.109 12 C -0.166 4.166 13 C 0.019 3.981 14 N -0.315 5.315 15 C -0.382 4.382 16 H 0.082 0.918 17 C -0.197 4.197 18 N -0.548 5.548 19 Si 0.732 3.268 20 H -0.209 1.209 21 H -0.216 1.216 22 H -0.210 1.210 23 C 0.046 3.954 24 C -0.173 4.173 25 C -0.091 4.091 26 C -0.091 4.091 27 C -0.175 4.175 28 H 0.096 0.904 29 H 0.090 0.910 30 H 0.094 0.906 31 H 0.156 0.844 32 H 0.233 0.767 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.079 0.921 37 H 0.064 0.936 38 H 0.033 0.967 39 H 0.071 0.929 40 H 0.064 0.936 41 H 0.035 0.965 42 H 0.106 0.894 43 H 0.070 0.930 44 H 0.076 0.924 45 H 0.154 0.846 46 H 0.094 0.906 47 H 0.091 0.909 48 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -24.170 12.793 -2.250 27.440 hybrid contribution 0.640 -0.541 0.531 0.992 sum -23.530 12.252 -1.719 26.585 Atomic orbital electron populations 1.20906 0.90251 1.03481 1.02954 1.19904 0.96525 0.91822 0.97140 1.20916 0.91557 0.98870 1.02544 1.20991 0.92203 0.87832 1.00586 1.98420 1.76728 1.29087 1.96055 1.19826 0.94038 0.92690 1.06626 1.18069 0.86535 0.84363 0.77560 1.90866 1.69456 1.30549 1.48603 1.46012 1.08234 1.08011 1.74905 1.21605 0.77789 0.98300 1.02114 1.21315 0.97945 0.92883 0.98760 1.22079 0.98343 0.99348 0.96872 1.20884 0.86431 0.92354 0.98412 1.44035 1.00227 1.58813 1.28408 1.19137 0.99686 1.29200 0.90223 0.91820 1.25044 1.00158 0.98710 0.95741 1.70017 1.25637 1.47842 1.11272 0.86373 0.81820 0.78319 0.80276 1.20906 1.21642 1.21025 1.20760 1.00274 0.86031 0.88335 1.22180 0.92908 1.01696 1.00471 1.21201 0.93749 0.96815 0.97288 1.19795 0.93319 0.95479 1.00555 1.20873 1.00182 0.93530 1.02880 0.90435 0.91034 0.90648 0.84407 0.76684 0.91619 0.91427 0.91330 0.92109 0.93614 0.96657 0.92902 0.93584 0.96462 0.89406 0.93036 0.92361 0.84647 0.90636 0.90923 0.90881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.53 9.18 36.01 0.33 -0.20 16 2 C -0.05 -0.39 5.88 -104.54 -0.62 -1.01 16 3 C -0.12 -1.05 9.47 -39.60 -0.37 -1.42 16 4 C 0.01 0.14 6.35 -39.07 -0.25 -0.11 16 5 Cl -0.03 -0.41 26.02 -51.86 -1.35 -1.76 16 6 C -0.13 -1.50 5.88 -104.94 -0.62 -2.11 16 7 C 0.55 7.69 7.76 -12.37 -0.10 7.59 16 8 O -0.52 -8.87 13.97 5.31 0.07 -8.79 16 9 N -0.72 -9.03 5.22 -61.28 -0.32 -9.35 16 10 C 0.12 1.78 5.06 -4.04 -0.02 1.76 16 11 C -0.09 -1.40 2.19 -90.58 -0.20 -1.60 16 12 C -0.13 -2.05 5.25 -26.61 -0.14 -2.19 16 13 C 0.15 2.92 6.52 -3.71 -0.02 2.90 16 14 N -0.59 -14.53 2.99 -172.31 -0.52 -15.05 16 15 C -0.25 -6.88 9.58 -15.06 -0.14 -7.02 16 16 H 0.06 1.70 7.89 -52.48 -0.41 1.29 16 17 C 0.00 0.06 4.92 -17.43 -0.09 -0.03 16 18 N -0.90 -26.04 11.19 55.49 0.62 -25.42 16 19 Si 0.90 21.64 29.59 -169.99 -5.03 16.61 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 22 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 23 C 0.17 4.00 5.30 -3.71 -0.02 3.98 16 24 C -0.13 -2.44 5.36 -26.61 -0.14 -2.59 16 25 C -0.07 -0.65 9.19 -39.19 -0.36 -1.00 16 26 C -0.09 -0.70 5.87 -104.68 -0.61 -1.31 16 27 C -0.12 -0.60 9.18 36.01 0.33 -0.27 16 28 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.07 0.26 8.08 -51.93 -0.42 -0.16 16 30 H 0.07 0.26 6.68 -51.93 -0.35 -0.08 16 31 H 0.14 0.94 8.06 -52.48 -0.42 0.51 16 32 H 0.40 4.08 5.68 -40.82 -0.23 3.85 16 33 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 34 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.05 0.60 7.15 -51.93 -0.37 0.23 16 38 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 39 H 0.05 1.05 7.93 -51.93 -0.41 0.64 16 40 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 41 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.09 2.31 6.06 -51.93 -0.31 2.00 16 43 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 45 H 0.14 0.97 6.40 -52.49 -0.34 0.63 16 46 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 47 H 0.07 0.29 6.69 -51.93 -0.35 -0.06 16 48 H 0.07 0.35 8.08 -51.93 -0.42 -0.07 16 LS Contribution 391.69 15.07 5.90 5.90 Total: -1.00 -31.94 391.69 -11.05 -42.99 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -7.40 Total: -0.49 kcal Atomic # 6 Polarization: -1.61 SS G_CDS: -3.04 Total: -4.65 kcal Atomic # 7 Polarization: -49.60 SS G_CDS: -0.21 Total: -49.81 kcal Atomic # 8 Polarization: -8.87 SS G_CDS: 0.07 Total: -8.79 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.03 Total: 16.61 kcal Atomic # 17 Polarization: -0.41 SS G_CDS: -1.35 Total: -1.76 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -31.94 -11.05 -42.99 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097080448.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.906 kcal (2) G-P(sol) polarization free energy of solvation -31.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds